Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006999.1

Orthogroup ID

OG0005336

Physical Location & Seq

Genomic Coordinates Reverse (-)

54236 .. 54778

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006999.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atggagtctccactaggttttgcgtcaaccttgttctttgcttccctgttcttgcttctctcttccccttcacccacaaatgcatcaactcgtttagttgaatctgtgtgcaatgaagtagaaggcattttgaaaggcagcaactctgaatgcttgaaagctcttgagttggatcctcgaaccggatcggcgtccacttacgaagtgcttgccccgatcgctattgatttagcaatagcaaatgcaaaggatagcgaagctttcattaaaaatttgctcaagaacaactctagcagtgaagctataaaacagtgtgcagattcatataatatagtggtaagggattttgtaggtgccaaagaggagctgaaggaagaccctttgtcggctaactatgacatcaaaattgccggcgacaatgtccgtgattgtgagaacgcattgagttctaaagggcttcaagttcctgaaatagcttccagaaaccatgcaatgttcttatatagtaatattggatttgttatcactaatcatattgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

180

Amino Acids

19.41

Weight (kDa)

4.72

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005336)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54980 AT2G10970 AT4G24640 AT5G50030 AT5G50040 AT5G50050 AT5G50060 AT5G50070
fragaria_vesca	FvH4_2g13220
malus_domestica	MD10G1032400.v1.1 MD10G1032600.v1.1 MD10G1032700.v1.1
prunus_persica	Prupe.8G038100_v2.0.a1
pyrus_communis	pycom03g09400 pycom05g02200 pycom05g02210 pycom10g02080
rosa_chinensis	RchiOBHm_Chr6g0274541
rosa_laevigata	RLG00000013535
rosa_multiflora	Rmu_co8136600.1_g000001 Rmu_sc0006850.1_g000013 Rmu_sc0006999.1_g000013
rosa_roxburghii	Rroxscaffold_7G00194110 Rroxscaffold_7G00194170
rosa_rugosa	Rorug06G0082300
rosa_samantha	Rh6AG198600 Rh6BG201900 Rh6DG193700
rosa_wichuraiana	Rw6G017270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	353
AclWI	GGATC	3 cut(s)	167, 180, 193
AcsI	RAATTY	1 cut(s)	271
AcuI	CTGAAG	1 cut(s)	389
AcyI	GRCGYC	1 cut(s)	191
AfiI	CCNNNNNNNGG	2 cut(s)	182, 385
AgsI	TTSAA	4 cut(s)	101, 133, 157, 461
AhdI	GACNNNNNGTC	1 cut(s)	382
AluBI	AGCT	5 cut(s)	161, 260, 302, 367, 476
AluI	AGCT	5 cut(s)	161, 260, 302, 367, 476
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	3 cut(s)	167, 180, 193
ApeKI	GCWGC	1 cut(s)	138
ApoI	RAATTY	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	63
BamHI	GGATCC	1 cut(s)	172
BanI	GGYRCC	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	381
BbvI	GCAGC	1 cut(s)	150
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BcoDI	GTCTC	1 cut(s)	12
BfaI	CTAG	2 cut(s)	14, 291
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
BmeRI	GACNNNNNGTC	1 cut(s)	382
BmiI	GGNNCC	2 cut(s)	174, 355
BmsI	GCATC	1 cut(s)	92
BpiI	GAAGAC	1 cut(s)	381
BpuEI	CTTGAG	2 cut(s)	185, 263
BsaHI	GRCGYC	1 cut(s)	191
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	2 cut(s)	182, 385
Bse118I	RCCGGY	1 cut(s)	410
Bse3DI	GCAATG	2 cut(s)	118, 498
BseLI	CCNNNNNNNGG	2 cut(s)	182, 385
BseMI	GCAATG	2 cut(s)	118, 498
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	1 cut(s)	150
BsgI	GTGCAG	1 cut(s)	336
Bsh1285I	CGRYCG	1 cut(s)	219
BshNI	GGYRCC	1 cut(s)	353
BsiEI	CGRYCG	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	183, 411
BslI	CCNNNNNNNGG	2 cut(s)	182, 385
BsmAI	GTCTC	1 cut(s)	12
BsmI	GAATGC	1 cut(s)	155
Bsp143I	GATC	3 cut(s)	172, 185, 216
BspLI	GGNNCC	2 cut(s)	174, 355
BspPI	GGATC	3 cut(s)	167, 180, 193
BspT107I	GGYRCC	1 cut(s)	353
BsrDI	GCAATG	2 cut(s)	118, 498
BsrFI	RCCGGY	1 cut(s)	410
BssAI	RCCGGY	1 cut(s)	410
BssMI	GATC	3 cut(s)	172, 185, 216
BssNI	GRCGYC	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	312
Bst6I	CTCTTC	1 cut(s)	67
BstACI	GRCGYC	1 cut(s)	191
BstC8I	GCNNGC	2 cut(s)	210, 412
BstKTI	GATC	3 cut(s)	175, 188, 219
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	3 cut(s)	172, 185, 216
BstMCI	CGRYCG	1 cut(s)	219
BstMWI	GCNNNNNNNGC	1 cut(s)	218
BstV1I	GCAGC	1 cut(s)	150
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BtsI	GCAGTG	1 cut(s)	301
BtsIMutI	CAGTG	2 cut(s)	301, 317
Cac8I	GCNNGC	2 cut(s)	210, 412
Cfr10I	RCCGGY	1 cut(s)	410
CseI	GACGC	2 cut(s)	12, 180
CviAII	CATG	1 cut(s)	488
CviJI	RGCY	7 cut(s)	161, 260, 302, 367, 389, 457, 476
CviKI_1	RGCY	7 cut(s)	161, 260, 302, 367, 389, 457, 476
DpnI	GATC	3 cut(s)	174, 187, 218
DpnII	GATC	3 cut(s)	172, 185, 216
DriI	GACNNNNNGTC	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	67
Eam1105I	GACNNNNNGTC	1 cut(s)	382
EarI	CTCTTC	1 cut(s)	67
Eco57I	CTGAAG	1 cut(s)	389
EcoT22I	ATGCAT	1 cut(s)	85
FaeI	CATG	1 cut(s)	491
FaiI	YATR	9 cut(s)	305, 325, 327, 332, 396, 489, 502, 504, 534
FatI	CATG	1 cut(s)	487
Fnu4HI	GCNGC	1 cut(s)	139
Fsp4HI	GCNGC	1 cut(s)	139
FspBI	CTAG	2 cut(s)	14, 291
GluI	GCNGC	1 cut(s)	139
HapII	CCGG	2 cut(s)	183, 411
HgaI	GACGC	2 cut(s)	12, 180
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	1 cut(s)	491
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	258
HinfI	GANTC	3 cut(s)	5, 101, 320
HpaII	CCGG	2 cut(s)	183, 411
HphI	GGTGA	1 cut(s)	63
Hpy166II	GTNNAC	2 cut(s)	27, 195
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	4 cut(s)	164, 280, 467, 480
Hpy8I	GTNNAC	2 cut(s)	27, 195
HpyAV	CCTTC	3 cut(s)	78, 116, 364
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4V	TGCA	5 cut(s)	83, 111, 245, 317, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	218
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	1 cut(s)	491
KroI	GCCGGC	1 cut(s)	410
KroNI	GCCGGC	1 cut(s)	412
Kzo9I	GATC	3 cut(s)	172, 185, 216
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	5 cut(s)	59, 196, 424, 480, 493
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	1 cut(s)	92
MaeI	CTAG	2 cut(s)	14, 291
MalI	GATC	3 cut(s)	174, 187, 218
MboI	GATC	3 cut(s)	172, 185, 216
MboII	GAAGA	2 cut(s)	54, 386
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	2 cut(s)	271, 405
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	2 cut(s)	186, 355
Mph1103I	ATGCAT	1 cut(s)	85
MroNI	GCCGGC	1 cut(s)	410
MseI	TTAA	2 cut(s)	267, 541
MspI	CCGG	2 cut(s)	183, 411
Mva1269I	GAATGC	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	218
NaeI	GCCGGC	1 cut(s)	412
NdeII	GATC	3 cut(s)	172, 185, 216
NgoMIV	GCCGGC	1 cut(s)	410
NlaIII	CATG	1 cut(s)	491
NlaIV	GGNNCC	2 cut(s)	174, 355
NsiI	ATGCAT	1 cut(s)	85
PctI	GAATGC	1 cut(s)	155
PdiI	GCCGGC	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	101, 320
PflFI	GACNNNGTC	1 cut(s)	419
PkrI	GCNGC	1 cut(s)	140
Ple19I	CGATCG	1 cut(s)	219
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	174, 355
PsuI	RGATCY	1 cut(s)	172
PsyI	GACNNNGTC	1 cut(s)	419
PvuI	CGATCG	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	267, 541
SatI	GCNGC	1 cut(s)	139
Sau3AI	GATC	3 cut(s)	172, 185, 216
SchI	GAGTC	1 cut(s)	14
SetI	ASST	8 cut(s)	19, 32, 163, 262, 304, 355, 369, 478
SfaNI	GCATC	1 cut(s)	92
SmlI	CTYRAG	2 cut(s)	164, 278
SmoI	CTYRAG	2 cut(s)	164, 278
Sse9I	AATT	2 cut(s)	271, 405
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	2 cut(s)	14, 291
TaaI	ACNGT	1 cut(s)	312
TaqI	TCGA	1 cut(s)	178
TasI	AATT	2 cut(s)	271, 405
TfiI	GAWTC	2 cut(s)	101, 320
Tru1I	TTAA	2 cut(s)	267, 541
Tru9I	TTAA	2 cut(s)	267, 541
TscAI	CASTG	2 cut(s)	301, 317
TseI	GCWGC	1 cut(s)	138
TspDTI	ATGAA	3 cut(s)	129, 253, 312
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	2 cut(s)	301, 317
Tth111I	GACNNNGTC	1 cut(s)	419
XapI	RAATTY	1 cut(s)	271
XspI	CTAG	2 cut(s)	14, 291
Zsp2I	ATGCAT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.