AT1G55270

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002477
Physical Location & Seq
Reverse (-)
20617954 .. 20620146
2193 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55270.1

Sequence Viewer

Length: 1305 bp
ATGGATCTATCTTCTCAACGACAATCCCCAAATGGTTCTAGGGGTTTTCGTCTTCAAGCTCCATTGGTGGATTCTGTATCTTGTTATTGTAGAGTAGATTCCGGTCTTAAGACTGTTGTAGAAGCAAGGAAGTTTGTTCCTGGTTCAAAGCTTTGTATTCAACCTGATATCAATCCCAATGCTCATAGACGTAAGAATTCTAAGAGGGAGAGGACTAGAATTCAACCTCCGCTTCTCCCTGGCCTCCCTGACGATCTAGCTGTCGCTTGCCTTATCCGTGTTCCTCGTGCAGAACATAGAAAACTCAGGCTCGTGTGTAAGAGATGGTATAGGCTTGCTTCTGGGAACTTCTTTTACTCTCAAAGGAAGTTACTTGGGATGTCTGAAGAATGGGTTTATGTTTTTAAAAGAGATCGTGATGGGAAGATCTCGTGGAATACGTTTGATCCTATCTCTCAGCTTTGGCAGCCGCTTCCACCTGTTCCAAGGGAATATTCAGAGGCTGTTGGGTTTGGTTGCGCTGTTTTAAGCGGTTGTCATCTTTATTTGTTTGGAGGTAAGGATCCTTTAAGAGGGTCAATGAGGAGGGTCATTTTCTATAATGCAAGGACGAATAAGTGGCACAGAGCACCGGATATGCTTAGGAAGCGGCATTTTTTTGGTTGTTGTGTTATAAACAATTGTTTATATGTAGCGGGTGGGGAGTGTGAAGGAATTCAAAGGACACTTCGCTCAGCTGAGGTTTATGATCCAAACAAGAACAGGTGGAGTTTTATTGCTGATATGAGTACAGCAATGGTGCCTCTGATCGGTGTGGTTTATGACAAAAAGTGGTTTCTCAAGGGTCTTGGGTCTCACCAACTAGTAATGAGTGAAGCTTATGACCCAGAAGTTAATTCATGGAGCCCGGTTAGTGACGGGATGGTTGCTGGTTGGCGTAATCCGTGTACTTCTCTAAACGGTCGTCTTTACGGATTGGATTGTAGGGACGGATGCAAACTCAGGGTATTTGATGAATCCACGGATTCATGGAACAAATTCATGGACAGTAAAGCTCATTTGGGAAACTCGAAGTCGCTTGAAGCTGCAGCTCTTGTTCCTCTACACAATAAGCTTTGTATAATCCGGAACAACATGAGCATGAGTCTGGTTGATGTCTCGAATCCTGACAAAAACAACCCTCGACTGTGGGAAAACATTGCCGTAAAAGGACAGTCCAAGAGCATTCTCAGTAATATATGGTCGAGTATTGCAGGGAGAGCTTTGAAGAGCCATATAGTGCATTGTCAAGTGCTTCAAGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Kelch_1

Protein Analysis

434

Amino Acids

49.21

Weight (kDa)

9.61

Isoelectric Point (pI)

54.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 80 - 118 5e-06 F-box domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 147 - 304 5.9e-12 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_FKB95 PF25210 168 - 356 2.2e-19 FKB95, Kelch-repeats domain
Beta-prop_Calicin PF13964 191 - 305 1.6e-10 Calicin, beta-propeller domain
Kelch_1 PF01344 217 - 263 7.1e-14 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 674
AccB1I GGYRCC 1 cut(s) 799
AccIII TCCGGA 1 cut(s) 1125
AciI CCGC 5 cut(s) 230, 470, 531, 649, 695
AclWI GGATC 5 cut(s) 12, 440, 557, 570, 743
AcsI RAATTY 4 cut(s) 196, 219, 714, 1037
AcuI CTGAAG 1 cut(s) 405
AfaI GTAC 2 cut(s) 790, 949
AfiI CCNNNNNNNGG 2 cut(s) 572, 809
AflII CTTAAG 1 cut(s) 107
AgsI TTSAA 8 cut(s) 56, 147, 161, 224, 719, 1082, 1267, 1298
AhlI ACTAGT 1 cut(s) 862
AjnI CCWGG 2 cut(s) 139, 238
AjuI GAANNNNNNNTTGG 2 cut(s) 478, 510
Alw21I GWGCWC 1 cut(s) 631
Alw26I GTCTC 2 cut(s) 858, 1162
AlwI GGATC 5 cut(s) 12, 440, 557, 570, 743
AlwNI CAGNNNCTG 1 cut(s) 503
Aor13HI TCCGGA 1 cut(s) 1125
AoxI GGCC 1 cut(s) 241
ApeKI GCWGC 3 cut(s) 466, 1085, 1088
ApoI RAATTY 4 cut(s) 196, 219, 714, 1037
Asp700I GAANNNNTTC 2 cut(s) 714, 1037
AspLEI GCGC 1 cut(s) 521
AsuC2I CCSGG 1 cut(s) 908
AsuHPI GGTGA 1 cut(s) 848
BamHI GGATCC 1 cut(s) 562
BanI GGYRCC 1 cut(s) 799
BanII GRGCYC 1 cut(s) 908
BauI CACGAG 3 cut(s) 285, 311, 430
BbsI GAAGAC 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 631
BbvCI CCTCAGC 1 cut(s) 738
BbvI GCAGC 3 cut(s) 478, 1072, 1100
BccI CCATC 3 cut(s) 318, 413, 916
BceAI ACGGC 1 cut(s) 1187
BciT130I CCWGG 2 cut(s) 141, 240
BcnI CCSGG 1 cut(s) 908
BcoDI GTCTC 2 cut(s) 858, 1162
BcuI ACTAGT 1 cut(s) 862
BfaI CTAG 4 cut(s) 39, 216, 257, 863
BfmI CTRYAG 1 cut(s) 1086
BfrI CTTAAG 1 cut(s) 107
BglII AGATCT 1 cut(s) 426
BisI GCNGC 5 cut(s) 467, 470, 650, 1086, 1089
BlpI GCTNAGC 1 cut(s) 733
BlsI GCNGC 5 cut(s) 468, 471, 651, 1087, 1090
Bme1390I CCNGG 3 cut(s) 141, 240, 908
BmiI GGNNCC 3 cut(s) 564, 801, 905
BmrFI CCNGG 3 cut(s) 141, 240, 908
BmsI GCATC 1 cut(s) 983
BpiI GAAGAC 1 cut(s) 44
Bpu10I CCTNAGC 2 cut(s) 641, 738
Bpu1102I GCTNAGC 1 cut(s) 733
BpuEI CTTGAG 1 cut(s) 824
BpuMI CCSGG 1 cut(s) 908
BsaBI GATNNNNATC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 858
BsaJI CCNNGG 3 cut(s) 238, 485, 1020
BsaWI WCCGGW 3 cut(s) 101, 631, 1125
Bsc4I CCNNNNNNNGG 2 cut(s) 572, 809
Bse3DI GCAATG 2 cut(s) 801, 1197
Bse8I GATNNNNATC 1 cut(s) 171
BseAI TCCGGA 1 cut(s) 1125
BseBI CCWGG 2 cut(s) 141, 240
BseDI CCNNGG 3 cut(s) 238, 485, 1020
BseGI GGATG 3 cut(s) 384, 927, 998
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 572, 809
BseMI GCAATG 2 cut(s) 801, 1197
BseMII CTCAG 6 cut(s) 319, 470, 729, 747, 1015, 1243
BseRI GAGGAG 1 cut(s) 598
BseXI GCAGC 3 cut(s) 478, 1072, 1100
BsgI GTGCAG 1 cut(s) 309
Bsh1285I CGRYCG 1 cut(s) 964
BshFI GGCC 1 cut(s) 243
BshNI GGYRCC 1 cut(s) 799
BsiEI CGRYCG 1 cut(s) 964
BsiHKAI GWGCWC 1 cut(s) 631
BsiSI CCGG 4 cut(s) 102, 632, 908, 1126
BslFI GGGAC 1 cut(s) 1001
BslI CCNNNNNNNGG 2 cut(s) 572, 809
BsmAI GTCTC 2 cut(s) 858, 1162
BsmFI GGGAC 1 cut(s) 1001
BsmI GAATGC 1 cut(s) 1224
BsnI GGCC 1 cut(s) 243
Bso31I GGTCTC 1 cut(s) 858
Bsp1286I GDGCHC 2 cut(s) 631, 908
Bsp13I TCCGGA 1 cut(s) 1125
Bsp143I GATC 8 cut(s) 4, 253, 412, 426, 445, 562, 748, 807
Bsp1720I GCTNAGC 1 cut(s) 733
BspACI CCGC 5 cut(s) 230, 470, 531, 649, 695
BspANI GGCC 1 cut(s) 243
BspCNI CTCAG 6 cut(s) 318, 469, 730, 746, 1014, 1242
BspEI TCCGGA 1 cut(s) 1125
BspLI GGNNCC 3 cut(s) 564, 801, 905
BspMAI CTGCAG 1 cut(s) 1090
BspPI GGATC 5 cut(s) 12, 440, 557, 570, 743
BspQI GCTCTTC 1 cut(s) 1262
BspT107I GGYRCC 1 cut(s) 799
BspTI CTTAAG 1 cut(s) 107
BspTNI GGTCTC 1 cut(s) 858
BsrDI GCAATG 2 cut(s) 801, 1197
BssECI CCNNGG 3 cut(s) 238, 485, 1020
BssMI GATC 8 cut(s) 4, 253, 412, 426, 445, 562, 748, 807
BssSI CACGAG 3 cut(s) 285, 311, 430
BssT1I CCWWGG 1 cut(s) 485
Bst2BI CACGAG 3 cut(s) 285, 311, 430
Bst2UI CCWGG 2 cut(s) 141, 240
Bst4CI ACNGT 5 cut(s) 115, 962, 1049, 1188, 1215
Bst6I CTCTTC 1 cut(s) 1262
BstAFI CTTAAG 1 cut(s) 107
BstC8I GCNNGC 2 cut(s) 268, 336
BstDEI CTNAG 8 cut(s) 201, 305, 456, 641, 733, 738, 1001, 1229
BstDSI CCRYGG 1 cut(s) 1020
BstENI CCTNNNNNAGG 1 cut(s) 570
BstF5I GGATG 3 cut(s) 384, 927, 998
BstHHI GCGC 1 cut(s) 521
BstKTI GATC 8 cut(s) 7, 256, 415, 429, 448, 565, 751, 810
BstMAI GTCTC 2 cut(s) 858, 1162
BstMBI GATC 8 cut(s) 4, 253, 412, 426, 445, 562, 748, 807
BstMCI CGRYCG 1 cut(s) 964
BstMWI GCNNNNNNNGC 3 cut(s) 466, 646, 1259
BstNI CCWGG 2 cut(s) 141, 240
BstSCI CCNGG 3 cut(s) 139, 238, 906
BstSFI CTRYAG 1 cut(s) 1086
BstV1I GCAGC 3 cut(s) 478, 1072, 1100
BstV2I GAAGAC 1 cut(s) 44
BstX2I RGATCY 3 cut(s) 4, 426, 562
BstYI RGATCY 3 cut(s) 4, 426, 562
BsuRI GGCC 1 cut(s) 243
BtgI CCRYGG 1 cut(s) 1020
BtsCI GGATG 3 cut(s) 384, 927, 998
Cac8I GCNNGC 2 cut(s) 268, 336
CaiI CAGNNNCTG 1 cut(s) 503
CfoI GCGC 1 cut(s) 521
Csp6I GTAC 2 cut(s) 789, 948
CviAII CATG 5 cut(s) 900, 1029, 1042, 1135, 1141
CviQI GTAC 2 cut(s) 789, 948
DdeI CTNAG 8 cut(s) 201, 305, 456, 641, 733, 738, 1001, 1229
DpnI GATC 8 cut(s) 6, 255, 414, 428, 447, 564, 750, 809
DpnII GATC 8 cut(s) 4, 253, 412, 426, 445, 562, 748, 807
DraI TTTAAA 1 cut(s) 406
Eam1104I CTCTTC 1 cut(s) 1262
EarI CTCTTC 1 cut(s) 1262
Eco130I CCWWGG 1 cut(s) 485
Eco24I GRGCYC 1 cut(s) 908
Eco31I GGTCTC 1 cut(s) 858
Eco32I GATATC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 405
EcoNI CCTNNNNNAGG 1 cut(s) 570
EcoRI GAATTC 3 cut(s) 196, 219, 714
EcoRII CCWGG 2 cut(s) 139, 238
EcoRV GATATC 1 cut(s) 169
EcoT14I CCWWGG 1 cut(s) 485
EcoT38I GRGCYC 1 cut(s) 908
ErhI CCWWGG 1 cut(s) 485
FaeI CATG 5 cut(s) 903, 1032, 1045, 1138, 1144
FaqI GGGAC 1 cut(s) 1001
FatI CATG 5 cut(s) 899, 1028, 1041, 1134, 1140
FauI CCCGC 1 cut(s) 688
Fnu4HI GCNGC 5 cut(s) 467, 470, 650, 1086, 1089
FokI GGATG 3 cut(s) 391, 934, 1005
FriOI GRGCYC 1 cut(s) 908
Fsp4HI GCNGC 5 cut(s) 467, 470, 650, 1086, 1089
FspBI CTAG 4 cut(s) 39, 216, 257, 863
GlaI GCGC 1 cut(s) 520
GluI GCNGC 5 cut(s) 467, 470, 650, 1086, 1089
HaeIII GGCC 1 cut(s) 243
HapII CCGG 4 cut(s) 102, 632, 908, 1126
HhaI GCGC 1 cut(s) 521
Hin1II CATG 5 cut(s) 903, 1032, 1045, 1138, 1144
Hin6I GCGC 1 cut(s) 519
HinP1I GCGC 1 cut(s) 519
HindIII AAGCTT 3 cut(s) 149, 876, 1112
HinfI GANTC 6 cut(s) 71, 98, 1016, 1025, 1144, 1162
HpaII CCGG 4 cut(s) 102, 632, 908, 1126
HphI GGTGA 1 cut(s) 848
Hpy166II GTNNAC 1 cut(s) 948
Hpy188I TCNGA 3 cut(s) 385, 499, 807
Hpy188III TCNNGA 4 cut(s) 416, 1126, 1159, 1166
Hpy8I GTNNAC 1 cut(s) 948
HpyAV CCTTC 1 cut(s) 704
HpyCH4III ACNGT 5 cut(s) 115, 962, 1049, 1188, 1215
HpyCH4IV ACGT 2 cut(s) 190, 440
HpyCH4V TGCA 6 cut(s) 290, 605, 996, 1088, 1253, 1282
HpyF10VI GCNNNNNNNGC 3 cut(s) 466, 646, 1259
HpyF3I CTNAG 8 cut(s) 201, 305, 456, 641, 733, 738, 1001, 1229
HpySE526I ACGT 2 cut(s) 190, 440
Hsp92II CATG 5 cut(s) 903, 1032, 1045, 1138, 1144
HspAI GCGC 1 cut(s) 519
Kpn2I TCCGGA 1 cut(s) 1125
Kzo9I GATC 8 cut(s) 4, 253, 412, 426, 445, 562, 748, 807
LguI GCTCTTC 1 cut(s) 1262
LmnI GCTCC 2 cut(s) 64, 903
Lsp1109I GCAGC 3 cut(s) 478, 1072, 1100
LweI GCATC 1 cut(s) 983
MaeI CTAG 4 cut(s) 39, 216, 257, 863
MaeII ACGT 2 cut(s) 190, 440
MaeIII GTNAC 2 cut(s) 369, 914
MalI GATC 8 cut(s) 6, 255, 414, 428, 447, 564, 750, 809
MboI GATC 8 cut(s) 4, 253, 412, 426, 445, 562, 748, 807
MboII GAAGA 5 cut(s) 3, 44, 398, 436, 1279
MfeI CAATTG 1 cut(s) 679
MflI RGATCY 3 cut(s) 4, 426, 562
MhlI GDGCHC 2 cut(s) 631, 908
MluCI AATT 6 cut(s) 196, 219, 679, 714, 895, 1037
MlyI GAGTC 1 cut(s) 1153
MroI TCCGGA 1 cut(s) 1125
MroXI GAANNNNTTC 2 cut(s) 714, 1037
MseI TTAA 5 cut(s) 108, 405, 527, 569, 894
MslI CAYNNNNRTG 1 cut(s) 1139
MspA1I CMGCKG 1 cut(s) 737
MspCI CTTAAG 1 cut(s) 107
MspI CCGG 4 cut(s) 102, 632, 908, 1126
MspR9I CCNGG 3 cut(s) 141, 240, 908
MunI CAATTG 1 cut(s) 679
Mva1269I GAATGC 1 cut(s) 1224
MvaI CCWGG 2 cut(s) 141, 240
MwoI GCNNNNNNNGC 3 cut(s) 466, 646, 1259
NciI CCSGG 1 cut(s) 908
NdeII GATC 8 cut(s) 4, 253, 412, 426, 445, 562, 748, 807
NlaIII CATG 5 cut(s) 903, 1032, 1045, 1138, 1144
NlaIV GGNNCC 3 cut(s) 564, 801, 905
NmuCI GTSAC 1 cut(s) 914
PciSI GCTCTTC 1 cut(s) 1262
PcsI WCGNNNNNNNCGW 1 cut(s) 437
PctI GAATGC 1 cut(s) 1224
PdmI GAANNNNTTC 2 cut(s) 714, 1037
PfeI GAWTC 5 cut(s) 71, 98, 1016, 1025, 1162
PkrI GCNGC 5 cut(s) 468, 471, 651, 1087, 1090
PleI GAGTC 1 cut(s) 1152
PpsI GAGTC 1 cut(s) 1152
PsiI TTATAA 1 cut(s) 674
Psp6I CCWGG 2 cut(s) 139, 238
PspGI CCWGG 2 cut(s) 139, 238
PspN4I GGNNCC 3 cut(s) 564, 801, 905
PsrI GAACNNNNNNTAC 2 cut(s) 338, 370
PstI CTGCAG 1 cut(s) 1090
PstNI CAGNNNCTG 1 cut(s) 503
PsuI RGATCY 3 cut(s) 4, 426, 562
PvuII CAGCTG 1 cut(s) 737
RsaI GTAC 2 cut(s) 790, 949
RsaNI GTAC 2 cut(s) 789, 948
RseI CAYNNNNRTG 1 cut(s) 1139
SapI GCTCTTC 1 cut(s) 1262
SaqAI TTAA 5 cut(s) 108, 405, 527, 569, 894
SatI GCNGC 5 cut(s) 467, 470, 650, 1086, 1089
Sau3AI GATC 8 cut(s) 4, 253, 412, 426, 445, 562, 748, 807
SchI GAGTC 1 cut(s) 1153
ScrFI CCNGG 3 cut(s) 141, 240, 908
SduI GDGCHC 2 cut(s) 631, 908
SfaNI GCATC 1 cut(s) 983
SfcI CTRYAG 1 cut(s) 1086
SmiMI CAYNNNNRTG 1 cut(s) 1139
SmlI CTYRAG 2 cut(s) 107, 839
SmoI CTYRAG 2 cut(s) 107, 839
SpeI ACTAGT 1 cut(s) 862
Sse9I AATT 6 cut(s) 196, 219, 679, 714, 895, 1037
SsiI CCGC 5 cut(s) 230, 470, 531, 649, 695
SspI AATATT 1 cut(s) 494
SspMI CTAG 4 cut(s) 39, 216, 257, 863
StyD4I CCNGG 3 cut(s) 139, 238, 906
StyI CCWWGG 1 cut(s) 485
TaaI ACNGT 5 cut(s) 115, 962, 1049, 1188, 1215
TaiI ACGT 2 cut(s) 193, 443
TaqI TCGA 4 cut(s) 1070, 1160, 1183, 1244
TasI AATT 6 cut(s) 196, 219, 679, 714, 895, 1037
TatI WGTACW 2 cut(s) 788, 947
TauI GCSGC 2 cut(s) 472, 652
TfiI GAWTC 5 cut(s) 71, 98, 1016, 1025, 1162
Tru1I TTAA 5 cut(s) 108, 405, 527, 569, 894
Tru9I TTAA 5 cut(s) 108, 405, 527, 569, 894
TseFI GTSAC 1 cut(s) 914
TseI GCWGC 3 cut(s) 466, 1085, 1088
Tsp45I GTSAC 1 cut(s) 914
TspDTI ATGAA 4 cut(s) 888, 1017, 1029, 1030
TspGWI ACGGA 5 cut(s) 266, 933, 987, 1005, 1037
Vha464I CTTAAG 1 cut(s) 107
XagI CCTNNNNNAGG 1 cut(s) 570
XapI RAATTY 4 cut(s) 196, 219, 714, 1037
XmnI GAANNNNTTC 2 cut(s) 714, 1037
XspI CTAG 4 cut(s) 39, 216, 257, 863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.