Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002477

Physical Location & Seq

Genomic Coordinates Reverse (-)

65794164 .. 65798868

Gene Structure 4705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0478000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCTCAAGCAGATCATATTGTCAATTCTGACAGAGGCAGAAGATGGTCTCTTGAAGGAATGACTGCTCTTGTAACTGGTGGAACCAAAGGCATTGGGTATGCTACTGTGGAGGAATTGGCTGGACTAGGTGCAAATGTACATACTTGTTCTCGGAACGAAGCCCAACTCAACGACTGCTTGAGTCAATGGAAGAAAAATGGTTTTTATCAAGTCACTGGTTCAATCTGTGATGTGGTCTCAAAAATTCAAAGAGAAGAGTTAATCAATAAGGTCTCATCACTGTTTAATGGCAAACTTAACATCCTTATAAACAATGTGGGAACTAATAGAGAAAAGCTAGCAACTGAGTACACGGCTGAAGACTACTCATTTATCATGAGTACCAATCTTGAATCTACTTTCAATATGTGCCAACTTGCGCATCCTCTTCTGAAAGCTTCAGGAGCTGGTAACATTATTCTTCTGTCTTCTGTTTCTGGTGTGGTATCAATTGGGGAGGGTGCGAGTATATACGGTGCAACTAAAGGAGCAATGAATCAATTGGCCAAAAACTTGGCTTGTGAGTGGGCAAAAGACAAGATTAAAGTCAACAGTGTTGCTCCTTGGTTCATCAAAACTCCCTTTGTTGAACCTATTTTGAGTGACGAAAAGTTTATGGAGGCTGTCATCTCTCGAACCCCATTAGGACGTACCGGAAAGACTGAGGAGGTGTCTGCATTGGTGGCATTTCTATGCCTTCCGGCAGCCTCTTATATAACAGGGCAAACTATTTGCGTCGATGGAGGGATGACTGTCAATGGGTTCCTGTTCCAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

273

Amino Acids

29.36

Weight (kDa)

6.33

Isoelectric Point (pI)

26.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	22 - 217	5.4e-46	short chain dehydrogenase
KR	PF08659	22 - 185	1.3e-10	KR domain
adh_short_C2	PF13561	30 - 265	2.4e-57	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55270 AT1G55270
fragaria_vesca	FvH4_1g03541 FvH4_1g03541 FvH4_3g45191 FvH4_3g45191
malus_domestica	MD02G1034600.v1.1 MD03G1007500.v1.1 MD15G1175400.v1.1
prunus_persica	Prupe.6G009200_v2.0.a1 Prupe.6G009200_v2.0.a1 Prupe.7G240700_v2.0.a1 Prupe.7G240700_v2.0.a1
pyrus_communis	pycom03g00770 pycom03g00780 pycom11g00680 pycom15g15680
rosa_chinensis	RchiOBHm_Chr2g0088991 RchiOBHm_Chr2g0089041 RchiOBHm_Chr5g0082421 RchiOBHm_Chr5g0082431 RchiOBHm_Chr5g0082801
rosa_laevigata	RLG00000015985 RLG00000036990
rosa_multiflora	Rmu_co8150054.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001640 Rroxscaffold_2G00152320
rosa_rugosa	Rorug01G0486800 Rorug01G0486900 Rorug05G0478000 Rorug05G0479700
rosa_samantha	Rh2AG042300 Rh2BG040800 Rh2CG042400 Rh2DG041300 Rh5AG529500 Rh5AG530200 Rh5BG557100 Rh5CG579900
rosa_wichuraiana	Rw2G003520 Rw5G049580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	311
Acc16I	TGCGCA	1 cut(s)	423
AcoI	YGGCCR	1 cut(s)	546
AcsI	RAATTY	1 cut(s)	246
AcuI	CTGAAG	2 cut(s)	381, 426
AfaI	GTAC	4 cut(s)	141, 353, 385, 694
AgsI	TTSAA	6 cut(s)	56, 225, 251, 395, 406, 632
AluBI	AGCT	3 cut(s)	340, 440, 449
AluI	AGCT	3 cut(s)	340, 440, 449
Alw26I	GTCTC	3 cut(s)	54, 244, 280
AlwNI	CAGNNNCTG	1 cut(s)	449
AoxI	GGCC	1 cut(s)	546
ApeKI	GCWGC	1 cut(s)	746
ApoI	RAATTY	1 cut(s)	246
AspLEI	GCGC	1 cut(s)	424
AsuNHI	GCTAGC	1 cut(s)	340
BalI	TGGCCA	1 cut(s)	548
BbsI	GAAGAC	2 cut(s)	369, 462
BbvI	GCAGC	1 cut(s)	758
BccI	CCATC	2 cut(s)	39, 776
BceAI	ACGGC	1 cut(s)	372
BcoDI	GTCTC	3 cut(s)	54, 244, 280
BfaI	CTAG	2 cut(s)	128, 341
BisI	GCNGC	1 cut(s)	747
BlsI	GCNGC	1 cut(s)	748
BmiI	GGNNCC	2 cut(s)	85, 806
BmsI	GCATC	1 cut(s)	433
BmtI	GCTAGC	1 cut(s)	344
BpiI	GAAGAC	2 cut(s)	369, 462
BpuEI	CTTGAG	1 cut(s)	202
BsaI	GGTCTC	3 cut(s)	54, 244, 280
BsaJI	CCNNGG	1 cut(s)	605
BsaWI	WCCGGW	1 cut(s)	695
Bse1I	ACTGG	2 cut(s)	82, 223
Bse3DI	GCAATG	1 cut(s)	540
BseDI	CCNNGG	1 cut(s)	605
BseGI	GGATG	3 cut(s)	303, 424, 795
BseMI	GCAATG	1 cut(s)	540
BseMII	CTCAG	2 cut(s)	339, 696
BseNI	ACTGG	2 cut(s)	82, 223
BseRI	GAGGAG	1 cut(s)	722
BseXI	GCAGC	1 cut(s)	758
BshFI	GGCC	1 cut(s)	548
BsiSI	CCGG	2 cut(s)	696, 743
BsmAI	GTCTC	3 cut(s)	54, 244, 280
BsnI	GGCC	1 cut(s)	548
Bso31I	GGTCTC	3 cut(s)	54, 244, 280
Bsp1407I	TGTACA	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	13
BspANI	GGCC	1 cut(s)	548
BspCNI	CTCAG	2 cut(s)	340, 697
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	2 cut(s)	85, 806
BspOI	GCTAGC	1 cut(s)	344
BspTNI	GGTCTC	3 cut(s)	54, 244, 280
BsrDI	GCAATG	1 cut(s)	540
BsrGI	TGTACA	1 cut(s)	139
BsrI	ACTGG	2 cut(s)	82, 223
BssECI	CCNNGG	1 cut(s)	605
BssMI	GATC	1 cut(s)	13
BssT1I	CCWWGG	1 cut(s)	605
Bst4CI	ACNGT	5 cut(s)	109, 285, 518, 596, 796
Bst6I	CTCTTC	2 cut(s)	252, 435
BstAUI	TGTACA	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	2 cut(s)	348, 705
BstF5I	GGATG	3 cut(s)	303, 424, 795
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	1 cut(s)	16
BstMAI	GTCTC	3 cut(s)	54, 244, 280
BstMBI	GATC	1 cut(s)	13
BstMWI	GCNNNNNNNGC	2 cut(s)	446, 725
BstV1I	GCAGC	1 cut(s)	758
BstV2I	GAAGAC	2 cut(s)	369, 462
BstXI	CCANNNNNNTGG	1 cut(s)	556
BsuRI	GGCC	1 cut(s)	548
BtsCI	GGATG	3 cut(s)	303, 424, 795
BtsIMutI	CAGTG	3 cut(s)	216, 281, 601
Cac8I	GCNNGC	1 cut(s)	342
CaiI	CAGNNNCTG	1 cut(s)	449
CciI	TCATGA	1 cut(s)	378
CfoI	GCGC	1 cut(s)	424
CseI	GACGC	1 cut(s)	766
Csp6I	GTAC	4 cut(s)	140, 352, 384, 693
CviAII	CATG	1 cut(s)	379
CviQI	GTAC	4 cut(s)	140, 352, 384, 693
DdeI	CTNAG	2 cut(s)	348, 705
DpnI	GATC	1 cut(s)	15
DpnII	GATC	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	546
Eam1104I	CTCTTC	2 cut(s)	252, 435
EarI	CTCTTC	2 cut(s)	252, 435
Eco130I	CCWWGG	1 cut(s)	605
Eco31I	GGTCTC	3 cut(s)	54, 244, 280
Eco57I	CTGAAG	2 cut(s)	381, 426
EcoT14I	CCWWGG	1 cut(s)	605
ErhI	CCWWGG	1 cut(s)	605
FaeI	CATG	1 cut(s)	382
FatI	CATG	1 cut(s)	378
Fnu4HI	GCNGC	1 cut(s)	747
FokI	GGATG	3 cut(s)	290, 411, 802
Fsp4HI	GCNGC	1 cut(s)	747
FspBI	CTAG	2 cut(s)	128, 341
FspI	TGCGCA	1 cut(s)	423
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	1 cut(s)	747
HaeIII	GGCC	1 cut(s)	548
HapII	CCGG	2 cut(s)	696, 743
HgaI	GACGC	1 cut(s)	766
HhaI	GCGC	1 cut(s)	424
Hin1II	CATG	1 cut(s)	382
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HindIII	AAGCTT	1 cut(s)	438
HinfI	GANTC	3 cut(s)	184, 395, 538
HpaII	CCGG	2 cut(s)	696, 743
Hpy166II	GTNNAC	2 cut(s)	354, 592
Hpy188I	TCNGA	3 cut(s)	31, 156, 435
Hpy188III	TCNNGA	5 cut(s)	53, 379, 392, 444, 675
Hpy8I	GTNNAC	2 cut(s)	354, 592
Hpy99I	CGWCG	1 cut(s)	782
HpyAV	CCTTC	2 cut(s)	50, 749
HpyCH4III	ACNGT	5 cut(s)	109, 285, 518, 596, 796
HpyCH4IV	ACGT	1 cut(s)	691
HpyCH4V	TGCA	3 cut(s)	134, 521, 719
HpyF10VI	GCNNNNNNNGC	2 cut(s)	446, 725
HpyF3I	CTNAG	2 cut(s)	348, 705
HpySE526I	ACGT	1 cut(s)	691
Hsp92II	CATG	1 cut(s)	382
HspAI	GCGC	1 cut(s)	422
Kzo9I	GATC	1 cut(s)	13
LmnI	GCTCC	3 cut(s)	446, 530, 607
LpnPI	CCDG	9 cut(s)	63, 108, 204, 429, 435, 465, 709, 747, 756
Lsp1109I	GCAGC	1 cut(s)	758
LweI	GCATC	1 cut(s)	433
MaeI	CTAG	2 cut(s)	128, 341
MaeII	ACGT	1 cut(s)	691
MaeIII	GTNAC	4 cut(s)	73, 214, 452, 644
MalI	GATC	1 cut(s)	15
MboI	GATC	1 cut(s)	13
MboII	GAAGA	7 cut(s)	54, 205, 269, 374, 422, 455, 462
MfeI	CAATTG	2 cut(s)	492, 542
MlsI	TGGCCA	1 cut(s)	548
MluCI	AATT	5 cut(s)	25, 116, 246, 492, 542
MluNI	TGGCCA	1 cut(s)	548
MlyI	GAGTC	1 cut(s)	193
MnlI	CCTC	9 cut(s)	29, 106, 438, 493, 655, 700, 703, 760, 779
Mox20I	TGGCCA	1 cut(s)	548
MscI	TGGCCA	1 cut(s)	548
MseI	TTAA	4 cut(s)	263, 288, 300, 585
MslI	CAYNNNNRTG	1 cut(s)	733
Msp20I	TGGCCA	1 cut(s)	548
MspI	CCGG	2 cut(s)	696, 743
MunI	CAATTG	2 cut(s)	492, 542
MwoI	GCNNNNNNNGC	2 cut(s)	446, 725
NdeII	GATC	1 cut(s)	13
NheI	GCTAGC	1 cut(s)	340
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	2 cut(s)	85, 806
NmuCI	GTSAC	2 cut(s)	214, 644
NsbI	TGCGCA	1 cut(s)	423
PagI	TCATGA	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	395, 538
PkrI	GCNGC	1 cut(s)	748
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
PsiI	TTATAA	1 cut(s)	311
PspN4I	GGNNCC	2 cut(s)	85, 806
PstNI	CAGNNNCTG	1 cut(s)	449
RsaI	GTAC	4 cut(s)	141, 353, 385, 694
RsaNI	GTAC	4 cut(s)	140, 352, 384, 693
RseI	CAYNNNNRTG	1 cut(s)	733
SaqAI	TTAA	4 cut(s)	263, 288, 300, 585
SatI	GCNGC	1 cut(s)	747
Sau3AI	GATC	1 cut(s)	13
SchI	GAGTC	1 cut(s)	193
SetI	ASST	8 cut(s)	133, 276, 342, 442, 451, 637, 694, 714
SfaNI	GCATC	1 cut(s)	433
SmiMI	CAYNNNNRTG	1 cut(s)	733
SmlI	CTYRAG	2 cut(s)	6, 181
SmoI	CTYRAG	2 cut(s)	6, 181
Sse9I	AATT	5 cut(s)	25, 116, 246, 492, 542
SspMI	CTAG	2 cut(s)	128, 341
StyI	CCWWGG	1 cut(s)	605
TaaI	ACNGT	5 cut(s)	109, 285, 518, 596, 796
TaiI	ACGT	1 cut(s)	694
TaqI	TCGA	2 cut(s)	676, 780
TasI	AATT	5 cut(s)	25, 116, 246, 492, 542
TatI	WGTACW	2 cut(s)	139, 351
TfiI	GAWTC	2 cut(s)	395, 538
Tru1I	TTAA	4 cut(s)	263, 288, 300, 585
Tru9I	TTAA	4 cut(s)	263, 288, 300, 585
TscAI	CASTG	3 cut(s)	223, 288, 601
TseFI	GTSAC	2 cut(s)	214, 644
TseI	GCWGC	1 cut(s)	746
Tsp45I	GTSAC	2 cut(s)	214, 644
TspDTI	ATGAA	2 cut(s)	551, 601
TspRI	CASTG	3 cut(s)	223, 288, 601
XapI	RAATTY	1 cut(s)	246
XspI	CTAG	2 cut(s)	128, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.