Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002477

Physical Location & Seq

Genomic Coordinates Forward (+)

616580 .. 617227

Gene Structure 648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGCACACAGGGGAAAAAACTTACGCCGGGAAAGGACCAGAATCCAGCCACCCCTCCTGCCTGGTCTACCTGATCGATCTTGCAATTGCTTGTTTAATCAGAGTCCCCCGTGTTGAACATAGGAAACTCCGTATAGTTTGCAAAAGATGGTATCGCCTTCTAGCTGGAAACTTCTTTTATTCGCTTAGGAAAAGTCTTGGAATGGCAGAAGAATGGGTTTATGTTATCAAAAGAGACCGTGATGGAAGGATCTCTTGGCATGCTTTTGATCCCACATATCAGCTCTGGCAGCCACTTCCACCCGTTCCTGGTGAGTATTCTGCCGCACTTGGTTTTGGTTGTGCTGTCCTTAGCGGTTGTCACCTGTACTTGTTTGGAGGAAAACATCCACTGAAGGGATCTATGAGACGGGTTATTTTTTACAGTGCTCGGACAAATAAATGGCACAGGGCACCGGATATGCTTCGGAAACGCCATTTCTTTGGCTCTTGTGTTATTAATAATTGTCTTTATGTGGCTGGTGGGGAGTGTGAAGGAATTCAAAGGACTCTTCGTTCTGCTGAAATTTATCGATCCAAACAAAAATCGGTGGAGCTTTATTTCCGATATGAGCACAGCTATGGTGCCATTTATTGGGGTGGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

216

Amino Acids

24.82

Weight (kDa)

9.65

Isoelectric Point (pI)

50.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_KLHDC2_KLHL20_DRC7	PF24681	85 - 179	2.9e-07	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Kelch_FKB95	PF25210	102 - 194	6.2e-09	FKB95, Kelch-repeats domain
Kelch_1	PF01344	158 - 193	1.3e-06	Kelch motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55270 AT1G55270
fragaria_vesca	FvH4_1g03541 FvH4_1g03541 FvH4_3g45191 FvH4_3g45191
malus_domestica	MD02G1034600.v1.1 MD03G1007500.v1.1 MD15G1175400.v1.1
prunus_persica	Prupe.6G009200_v2.0.a1 Prupe.6G009200_v2.0.a1 Prupe.7G240700_v2.0.a1 Prupe.7G240700_v2.0.a1
pyrus_communis	pycom03g00770 pycom03g00780 pycom11g00680 pycom15g15680
rosa_chinensis	RchiOBHm_Chr2g0088991 RchiOBHm_Chr2g0089041 RchiOBHm_Chr5g0082421 RchiOBHm_Chr5g0082431 RchiOBHm_Chr5g0082801
rosa_laevigata	RLG00000015985 RLG00000036990
rosa_multiflora	Rmu_co8150054.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001640 Rroxscaffold_2G00152320
rosa_rugosa	Rorug01G0486800 Rorug01G0486900 Rorug05G0478000 Rorug05G0479700
rosa_samantha	Rh2AG042300 Rh2BG040800 Rh2CG042400 Rh2DG041300 Rh5AG529500 Rh5AG530200 Rh5BG557100 Rh5CG579900
rosa_wichuraiana	Rw2G003520 Rw5G049580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	451, 623
AccB7I	CCANNNNNTGG	1 cut(s)	633
AccI	GTMKAC	1 cut(s)	66
AciI	CCGC	2 cut(s)	324, 354
AclWI	GGATC	4 cut(s)	257, 263, 406, 567
AcsI	RAATTY	2 cut(s)	537, 564
AcuI	CTGAAG	1 cut(s)	413
AfaI	GTAC	1 cut(s)	368
AfiI	CCNNNNNNNGG	3 cut(s)	308, 395, 633
AgsI	TTSAA	2 cut(s)	116, 542
AjnI	CCWGG	2 cut(s)	60, 307
AjuI	GAANNNNNNNTTGG	2 cut(s)	238, 270
AloI	GAACNNNNNNTCC	2 cut(s)	538, 570
AluBI	AGCT	4 cut(s)	164, 283, 595, 618
AluI	AGCT	4 cut(s)	164, 283, 595, 618
Alw21I	GWGCWC	2 cut(s)	430, 615
Alw26I	GTCTC	2 cut(s)	228, 400
AlwI	GGATC	4 cut(s)	257, 263, 406, 567
ApeKI	GCWGC	1 cut(s)	289
ApoI	RAATTY	2 cut(s)	537, 564
AseI	ATTAAT	1 cut(s)	498
Asp700I	GAANNNNTTC	1 cut(s)	537
AspS9I	GGNCC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	323, 353
AvaII	GGWCC	1 cut(s)	35
BaeGI	GKGCMC	1 cut(s)	454
BanI	GGYRCC	2 cut(s)	451, 623
Bbv12I	GWGCWC	2 cut(s)	430, 615
BbvI	GCAGC	1 cut(s)	301
BccI	CCATC	2 cut(s)	141, 236
BciT130I	CCWGG	2 cut(s)	62, 309
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	2 cut(s)	228, 400
BfaI	CTAG	1 cut(s)	161
BisI	GCNGC	2 cut(s)	290, 324
BlsI	GCNGC	2 cut(s)	291, 325
Bme1390I	CCNGG	3 cut(s)	28, 62, 309
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	2 cut(s)	453, 625
BmrFI	CCNGG	3 cut(s)	28, 62, 309
Bpu10I	CCTNAGC	2 cut(s)	185, 350
BpuMI	CCSGG	1 cut(s)	28
Bsa29I	ATCGAT	2 cut(s)	75, 571
BsaI	GGTCTC	1 cut(s)	228
BsaWI	WCCGGW	1 cut(s)	454
Bsc4I	CCNNNNNNNGG	3 cut(s)	308, 395, 633
BseBI	CCWGG	2 cut(s)	62, 309
BseCI	ATCGAT	2 cut(s)	75, 571
BseGI	GGATG	1 cut(s)	385
BseLI	CCNNNNNNNGG	3 cut(s)	308, 395, 633
BseSI	GKGCMC	1 cut(s)	454
BseXI	GCAGC	1 cut(s)	301
BshNI	GGYRCC	2 cut(s)	451, 623
BshVI	ATCGAT	2 cut(s)	75, 571
BsiHKAI	GWGCWC	2 cut(s)	430, 615
BsiSI	CCGG	2 cut(s)	27, 455
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	3 cut(s)	308, 395, 633
BsmAI	GTCTC	2 cut(s)	228, 400
BsmBI	CGTCTC	1 cut(s)	400
BsmFI	GGGAC	1 cut(s)	89
Bso31I	GGTCTC	1 cut(s)	228
Bsp1286I	GDGCHC	3 cut(s)	430, 454, 615
Bsp143I	GATC	6 cut(s)	72, 76, 249, 268, 398, 572
BspACI	CCGC	2 cut(s)	324, 354
BspDI	ATCGAT	2 cut(s)	75, 571
BspHI	TCATGA	1 cut(s)	644
BspLI	GGNNCC	2 cut(s)	453, 625
BspPI	GGATC	4 cut(s)	257, 263, 406, 567
BspT107I	GGYRCC	2 cut(s)	451, 623
BspTNI	GGTCTC	1 cut(s)	228
BssMI	GATC	6 cut(s)	72, 76, 249, 268, 398, 572
Bst2UI	CCWGG	2 cut(s)	62, 309
Bst4CI	ACNGT	2 cut(s)	239, 425
Bst6I	CTCTTC	1 cut(s)	555
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	2 cut(s)	185, 350
BstF5I	GGATG	1 cut(s)	385
BstKTI	GATC	6 cut(s)	75, 79, 252, 271, 401, 575
BstMAI	GTCTC	2 cut(s)	228, 400
BstMBI	GATC	6 cut(s)	72, 76, 249, 268, 398, 572
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstNI	CCWGG	2 cut(s)	62, 309
BstNSI	RCATGY	1 cut(s)	263
BstSCI	CCNGG	3 cut(s)	26, 60, 307
BstSLI	GKGCMC	1 cut(s)	454
BstV1I	GCAGC	1 cut(s)	301
BstX2I	RGATCY	2 cut(s)	249, 398
BstXI	CCANNNNNNTGG	1 cut(s)	482
BstYI	RGATCY	2 cut(s)	249, 398
Bsu15I	ATCGAT	2 cut(s)	75, 571
BsuTUI	ATCGAT	2 cut(s)	75, 571
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	2 cut(s)	389, 430
Cac8I	GCNNGC	1 cut(s)	261
CciI	TCATGA	1 cut(s)	644
Cfr13I	GGNCC	1 cut(s)	35
ClaI	ATCGAT	2 cut(s)	75, 571
Csp6I	GTAC	1 cut(s)	367
CviAII	CATG	2 cut(s)	260, 645
CviJI	RGCY	8 cut(s)	48, 164, 283, 292, 486, 518, 595, 618
CviKI_1	RGCY	8 cut(s)	48, 164, 283, 292, 486, 518, 595, 618
CviQI	GTAC	1 cut(s)	367
DdeI	CTNAG	2 cut(s)	185, 350
DpnI	GATC	6 cut(s)	74, 78, 251, 270, 400, 574
DpnII	GATC	6 cut(s)	72, 76, 249, 268, 398, 572
Eam1104I	CTCTTC	1 cut(s)	555
EarI	CTCTTC	1 cut(s)	555
Eco31I	GGTCTC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	413
EcoRI	GAATTC	1 cut(s)	537
EcoRII	CCWGG	2 cut(s)	60, 307
Esp3I	CGTCTC	1 cut(s)	400
FaeI	CATG	2 cut(s)	263, 648
FalI	AAGNNNNNCTT	2 cut(s)	238, 270
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	2 cut(s)	259, 644
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	290, 324
FokI	GGATG	1 cut(s)	372
Fsp4HI	GCNGC	2 cut(s)	290, 324
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	2 cut(s)	290, 324
HapII	CCGG	2 cut(s)	27, 455
Hin1II	CATG	2 cut(s)	263, 648
HinfI	GANTC	3 cut(s)	41, 102, 547
HpaII	CCGG	2 cut(s)	27, 455
HphI	GGTGA	2 cut(s)	323, 353
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	4 cut(s)	101, 432, 468, 605
Hpy188III	TCNNGA	1 cut(s)	645
Hpy8I	GTNNAC	1 cut(s)	67
HpyAV	CCTTC	4 cut(s)	167, 240, 388, 527
HpyCH4III	ACNGT	2 cut(s)	239, 425
HpyCH4V	TGCA	3 cut(s)	4, 83, 141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpyF3I	CTNAG	2 cut(s)	185, 350
Hsp92II	CATG	2 cut(s)	263, 648
Kzo9I	GATC	6 cut(s)	72, 76, 249, 268, 398, 572
LmnI	GCTCC	1 cut(s)	592
Lsp1109I	GCAGC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	6 cut(s)	74, 78, 251, 270, 400, 574
MboI	GATC	6 cut(s)	72, 76, 249, 268, 398, 572
MboII	GAAGA	2 cut(s)	221, 542
MfeI	CAATTG	1 cut(s)	84
MflI	RGATCY	2 cut(s)	249, 398
MhlI	GDGCHC	3 cut(s)	430, 454, 615
MluCI	AATT	4 cut(s)	84, 502, 537, 564
MlyI	GAGTC	2 cut(s)	111, 541
MnlI	CCTC	2 cut(s)	64, 371
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	2 cut(s)	95, 498
MslI	CAYNNNNRTG	1 cut(s)	618
MspI	CCGG	2 cut(s)	27, 455
MspR9I	CCNGG	3 cut(s)	28, 62, 309
MunI	CAATTG	1 cut(s)	84
MvaI	CCWGG	2 cut(s)	62, 309
MwoI	GCNNNNNNNGC	1 cut(s)	289
NciI	CCSGG	1 cut(s)	28
NdeII	GATC	6 cut(s)	72, 76, 249, 268, 398, 572
NlaIII	CATG	2 cut(s)	263, 648
NlaIV	GGNNCC	2 cut(s)	453, 625
NmuCI	GTSAC	1 cut(s)	359
NspI	RCATGY	1 cut(s)	263
PaeI	GCATGC	1 cut(s)	263
PagI	TCATGA	1 cut(s)	644
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	633
PkrI	GCNGC	2 cut(s)	291, 325
PleI	GAGTC	2 cut(s)	110, 541
PpsI	GAGTC	2 cut(s)	110, 541
PshBI	ATTAAT	1 cut(s)	498
Psp6I	CCWGG	2 cut(s)	60, 307
PspGI	CCWGG	2 cut(s)	60, 307
PspN4I	GGNNCC	2 cut(s)	453, 625
PspPI	GGNCC	1 cut(s)	35
PsuI	RGATCY	2 cut(s)	249, 398
RsaI	GTAC	1 cut(s)	368
RsaNI	GTAC	1 cut(s)	367
RseI	CAYNNNNRTG	1 cut(s)	618
SaqAI	TTAA	2 cut(s)	95, 498
SatI	GCNGC	2 cut(s)	290, 324
Sau3AI	GATC	6 cut(s)	72, 76, 249, 268, 398, 572
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	2 cut(s)	111, 541
ScrFI	CCNGG	3 cut(s)	28, 62, 309
SduI	GDGCHC	3 cut(s)	430, 454, 615
SetI	ASST	6 cut(s)	72, 166, 285, 366, 597, 620
SinI	GGWCC	1 cut(s)	35
SmiMI	CAYNNNNRTG	1 cut(s)	618
SphI	GCATGC	1 cut(s)	263
Sse9I	AATT	4 cut(s)	84, 502, 537, 564
SsiI	CCGC	2 cut(s)	324, 354
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	3 cut(s)	26, 60, 307
TaaI	ACNGT	2 cut(s)	239, 425
TaqI	TCGA	2 cut(s)	75, 571
TasI	AATT	4 cut(s)	84, 502, 537, 564
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	1 cut(s)	326
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	95, 498
Tru9I	TTAA	2 cut(s)	95, 498
TscAI	CASTG	2 cut(s)	396, 430
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	1 cut(s)	289
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	633
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	2 cut(s)	396, 430
Van91I	CCANNNNNTGG	1 cut(s)	633
VpaK11BI	GGWCC	1 cut(s)	35
VspI	ATTAAT	1 cut(s)	498
XapI	RAATTY	2 cut(s)	537, 564
XceI	RCATGY	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	66
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.