RchiOBHm_Chr2g0088991

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002477
Physical Location & Seq
Reverse (-)
3316198 .. 3317766
1569 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46429

Sequence Viewer

Length: 1206 bp
ATGCCTCTGCTTCATCATCTCAATAGTCATGGGCGTGAAGACGAACAAATTGTGGAAGAGTTCCATGGATGCAGAAGTAAGCCTGCACGTGGTGAGAGTAGCCGCAATCAATCCCCTCTTCTTCCTGGACTCCCCGATGATCTTGCTATTGCTTGCCTAATTCGGGTCCCAAGAGTGGAGCATCGTAAGCTCCGCCTAGTTTGCAAAAGATGGTACCGTCTTCTGGCTGGCAACTTCTTTTACTCTCTCCGTAAGAGCATTGGCATTGCCGAAGAATGGATATACTTGATTAAAAGAGATCGAGATGGGAAAATATCTTGGCATGCCTTTGACCCTGTATACCAGCTATGGCAGTCCCTTCCTCCTGTCCCTAAGGAATATTCTGAAGCTCTTGGATTTGGTTGTGCTGTACTCGGTGGCTGTCACCTCTATCTGTTTGGAGGAAAGGACCCTCTAAAGGGATCAATGAGACGAGTCATTTTTTACAGTGCCAGGACCAATAAATGGCATCGTGCCCCAGATATGCTTCGCAGGCGACATTTTTTTGGCTCGTGTGTTATAAATAACTGCCTCTATGTTGCTGGTGGAGAGAATGAGGGGGTGCATAGGTCCTTGAGATCAGCAGAAGTCTATGATCCCAACAAGAATAGATGGTCCTTCATTTCAGATATGAGCACTGCAATGGTGCCTTTCATTGGGGTTGTCTACGAAGGCAAATGGTTCTTAAAGGGGCTCGGGTCTCATCGACAAGTCCTGAGTGAGGTCTATCAACCAGAAAATGACAGCTGGTACTCTGTGTATGACGGAATGGTTGCAGGCTGGCGGAACCCCAGTGCTTCTTTAAATGGGCATCTCTATGCTTTGGAGTGCAAGGATGGCTGCAAACTCAGAGTTTACGATGAGGCAACTGATTCTTGGAGCAAGCATATCGACAGTAAGATACATTTGGGTAACTCTAGGGCCTTGGAGGCAGCTTCCCTGGTTCCCCTTAACGGTAAACTTTGCATCATCCGAAATAATATGAGTATTTCACTTGTTGATGTTTCGAAATCAAATGATGCTGGTGGAGCAAGTGCTGAACATCTGTGGGAAACTCTAGCAGGCAAAGGGCAGTTCAGGACAATGGTCACAAATCTGTGGTCAAGCCTTGCCGGCAGAAACCGCCTGAAAAGTCACATAGTTCACTGCCAGGTTCTTCAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Kelch_1

Protein Analysis

401

Amino Acids

45.46

Weight (kDa)

9.22

Isoelectric Point (pI)

52.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 42 - 78 3.6e-06 F-box domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 106 - 266 5.6e-11 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_Calicin PF13964 115 - 229 1.7e-10 Calicin, beta-propeller domain
Kelch_FKB95 PF25210 120 - 308 1e-19 FKB95, Kelch-repeats domain
Beta-prop_Calicin PF13964 153 - 264 2.1e-11 Calicin, beta-propeller domain
Kelch_1 PF01344 178 - 225 3.2e-15 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
Acc65I GGTACC 1 cut(s) 213
AccB1I GGYRCC 2 cut(s) 213, 685
AccB7I CCANNNNNTGG 1 cut(s) 504
AccI GTMKAC 2 cut(s) 339, 705
AciI CCGC 4 cut(s) 103, 193, 823, 1162
AclWI GGATC 2 cut(s) 469, 629
AcuI CTGAAG 1 cut(s) 405
AcvI CACGTG 1 cut(s) 89
AdeI CACNNNGTG 1 cut(s) 92
AfaI GTAC 3 cut(s) 215, 411, 791
AgsI TTSAA 1 cut(s) 1199
AjnI CCWGG 4 cut(s) 124, 491, 978, 1188
AluBI AGCT 6 cut(s) 190, 346, 389, 786, 974, 1202
AluI AGCT 6 cut(s) 190, 346, 389, 786, 974, 1202
Alw21I GWGCWC 1 cut(s) 677
Alw26I GTCTC 2 cut(s) 463, 744
AlwI GGATC 2 cut(s) 469, 629
Ama87I CYCGRG 1 cut(s) 734
AoxI GGCC 1 cut(s) 960
ApeKI GCWGC 2 cut(s) 879, 971
ArsI GACNNNNNNTTYG 2 cut(s) 1124, 1156
Asp718I GGTACC 1 cut(s) 213
AspS9I GGNCC 6 cut(s) 166, 448, 495, 609, 654, 960
AsuHPI GGTGA 2 cut(s) 104, 416
AsuII TTCGAA 1 cut(s) 1046
AvaI CYCGRG 1 cut(s) 734
AvaII GGWCC 5 cut(s) 166, 448, 495, 609, 654
AxyI CCTNAGG 1 cut(s) 372
BaeGI GKGCMC 1 cut(s) 517
BanI GGYRCC 2 cut(s) 213, 685
BanII GRGCYC 1 cut(s) 735
BauI CACGAG 1 cut(s) 550
BbrPI CACGTG 1 cut(s) 89
BbsI GAAGAC 2 cut(s) 45, 212
Bbv12I GWGCWC 1 cut(s) 677
BbvI GCAGC 2 cut(s) 866, 983
BccI CCATC 4 cut(s) 204, 299, 645, 869
BcgI CGANNNNNNTGC 4 cut(s) 125, 159, 910, 944
BciT130I CCWGG 4 cut(s) 126, 493, 980, 1190
BcoDI GTCTC 2 cut(s) 463, 744
BfaI CTAG 3 cut(s) 197, 957, 1097
BglI GCCNNNNNGGC 2 cut(s) 968, 1152
BisI GCNGC 3 cut(s) 103, 880, 972
BlsI GCNGC 3 cut(s) 104, 881, 973
Bme1390I CCNGG 4 cut(s) 126, 493, 980, 1190
Bme18I GGWCC 5 cut(s) 166, 448, 495, 609, 654
BmeT110I CYCGRG 1 cut(s) 734
BmgT120I GGNCC 6 cut(s) 166, 448, 495, 609, 654, 960
BmiI GGNNCC 7 cut(s) 167, 168, 215, 450, 687, 827, 984
BmrFI CCNGG 4 cut(s) 126, 493, 980, 1190
BmrI ACTGGG 1 cut(s) 825
BmsI GCATC 6 cut(s) 59, 190, 517, 859, 1014, 1048
BmuI ACTGGG 1 cut(s) 825
BoxI GACNNNNGTC 1 cut(s) 1124
BpiI GAAGAC 2 cut(s) 45, 212
Bpu14I TTCGAA 1 cut(s) 1046
BpuEI CTTGAG 1 cut(s) 634
BsaAI YACGTR 1 cut(s) 89
BsaI GGTCTC 1 cut(s) 744
BsaJI CCNNGG 3 cut(s) 64, 963, 978
Bse118I RCCGGY 1 cut(s) 1151
Bse1I ACTGG 1 cut(s) 831
Bse21I CCTNAGG 1 cut(s) 372
Bse3DI GCAATG 2 cut(s) 264, 687
BseBI CCWGG 4 cut(s) 126, 493, 980, 1190
BseDI CCNNGG 3 cut(s) 64, 963, 978
BseGI GGATG 3 cut(s) 74, 880, 1008
BseMI GCAATG 2 cut(s) 264, 687
BseMII CTCAG 2 cut(s) 746, 901
BseNI ACTGG 1 cut(s) 831
BseSI GKGCMC 1 cut(s) 517
BseXI GCAGC 2 cut(s) 866, 983
BsgI GTGCAG 1 cut(s) 69
BshFI GGCC 1 cut(s) 962
BshNI GGYRCC 2 cut(s) 213, 685
BsiHKAI GWGCWC 1 cut(s) 677
BsiHKCI CYCGRG 1 cut(s) 734
BsiSI CCGG 1 cut(s) 1152
BslFI GGGAC 3 cut(s) 152, 340, 353
BsmAI GTCTC 2 cut(s) 463, 744
BsmBI CGTCTC 1 cut(s) 463
BsmFI GGGAC 3 cut(s) 152, 340, 353
BsnI GGCC 1 cut(s) 962
Bso31I GGTCTC 1 cut(s) 744
BsoBI CYCGRG 1 cut(s) 734
Bsp119I TTCGAA 1 cut(s) 1046
Bsp1286I GDGCHC 3 cut(s) 517, 677, 735
Bsp143I GATC 5 cut(s) 139, 298, 461, 617, 634
Bsp19I CCATGG 1 cut(s) 64
BspACI CCGC 4 cut(s) 103, 193, 823, 1162
BspANI GGCC 1 cut(s) 962
BspCNI CTCAG 2 cut(s) 747, 900
BspLI GGNNCC 7 cut(s) 167, 168, 215, 450, 687, 827, 984
BspPI GGATC 2 cut(s) 469, 629
BspT104I TTCGAA 1 cut(s) 1046
BspT107I GGYRCC 2 cut(s) 213, 685
BspTNI GGTCTC 1 cut(s) 744
BsrDI GCAATG 2 cut(s) 264, 687
BsrFI RCCGGY 1 cut(s) 1151
BsrI ACTGG 1 cut(s) 831
BssAI RCCGGY 1 cut(s) 1151
BssECI CCNNGG 3 cut(s) 64, 963, 978
BssMI GATC 5 cut(s) 139, 298, 461, 617, 634
BssNAI GTATAC 1 cut(s) 340
BssSI CACGAG 1 cut(s) 550
BssT1I CCWWGG 2 cut(s) 64, 963
Bst1107I GTATAC 1 cut(s) 340
Bst2BI CACGAG 1 cut(s) 550
Bst2UI CCWGG 4 cut(s) 126, 493, 980, 1190
Bst4CI ACNGT 4 cut(s) 218, 488, 935, 995
Bst6I CTCTTC 2 cut(s) 51, 123
BstBAI YACGTR 1 cut(s) 89
BstBI TTCGAA 1 cut(s) 1046
BstDEI CTNAG 4 cut(s) 372, 755, 887, 1203
BstDSI CCRYGG 1 cut(s) 64
BstENI CCTNNNNNAGG 1 cut(s) 758
BstF5I GGATG 3 cut(s) 74, 880, 1008
BstKTI GATC 5 cut(s) 142, 301, 464, 620, 637
BstMAI GTCTC 2 cut(s) 463, 744
BstMBI GATC 5 cut(s) 139, 298, 461, 617, 634
BstMWI GCNNNNNNNGC 8 cut(s) 187, 201, 532, 876, 968, 1067, 1152, 1161
BstNI CCWGG 4 cut(s) 126, 493, 980, 1190
BstNSI RCATGY 1 cut(s) 326
BstPAI GACNNNNGTC 1 cut(s) 1124
BstSCI CCNGG 4 cut(s) 124, 491, 978, 1188
BstSLI GKGCMC 1 cut(s) 517
BstV1I GCAGC 2 cut(s) 866, 983
BstV2I GAAGAC 2 cut(s) 45, 212
BstZ17I GTATAC 1 cut(s) 340
Bsu36I CCTNAGG 1 cut(s) 372
BsuRI GGCC 1 cut(s) 962
BtgI CCRYGG 1 cut(s) 64
BtsCI GGATG 3 cut(s) 74, 880, 1008
BtsI GCAGTG 2 cut(s) 675, 1183
BtsIMutI CAGTG 4 cut(s) 493, 675, 838, 1183
Cfr10I RCCGGY 1 cut(s) 1151
Cfr13I GGNCC 6 cut(s) 166, 448, 495, 609, 654, 960
Csp6I GTAC 3 cut(s) 214, 410, 790
CviAII CATG 3 cut(s) 29, 65, 323
CviQI GTAC 3 cut(s) 214, 410, 790
DdeI CTNAG 4 cut(s) 372, 755, 887, 1203
DpnI GATC 5 cut(s) 141, 300, 463, 619, 636
DpnII GATC 5 cut(s) 139, 298, 461, 617, 634
DraI TTTAAA 1 cut(s) 843
DraIII CACNNNGTG 1 cut(s) 92
Eam1104I CTCTTC 2 cut(s) 51, 123
EarI CTCTTC 2 cut(s) 51, 123
EciI GGCGGA 2 cut(s) 182, 838
Eco130I CCWWGG 2 cut(s) 64, 963
Eco24I GRGCYC 1 cut(s) 735
Eco31I GGTCTC 1 cut(s) 744
Eco47I GGWCC 5 cut(s) 166, 448, 495, 609, 654
Eco57I CTGAAG 1 cut(s) 405
Eco72I CACGTG 1 cut(s) 89
Eco81I CCTNAGG 1 cut(s) 372
Eco88I CYCGRG 1 cut(s) 734
EcoNI CCTNNNNNAGG 1 cut(s) 758
EcoO109I RGGNCCY 4 cut(s) 166, 448, 609, 960
EcoRII CCWGG 4 cut(s) 124, 491, 978, 1188
EcoT14I CCWWGG 2 cut(s) 64, 963
EcoT38I GRGCYC 1 cut(s) 735
ErhI CCWWGG 2 cut(s) 64, 963
Esp3I CGTCTC 1 cut(s) 463
FaeI CATG 3 cut(s) 32, 68, 326
FaqI GGGAC 3 cut(s) 152, 340, 353
FatI CATG 3 cut(s) 28, 64, 322
FblI GTMKAC 2 cut(s) 339, 705
Fnu4HI GCNGC 3 cut(s) 103, 880, 972
FokI GGATG 3 cut(s) 81, 887, 995
FriOI GRGCYC 1 cut(s) 735
Fsp4HI GCNGC 3 cut(s) 103, 880, 972
FspBI CTAG 3 cut(s) 197, 957, 1097
GluI GCNGC 3 cut(s) 103, 880, 972
HaeIII GGCC 1 cut(s) 962
HapII CCGG 1 cut(s) 1152
Hin1II CATG 3 cut(s) 32, 68, 326
HindIII AAGCTT 1 cut(s) 1200
HinfI GANTC 3 cut(s) 129, 474, 911
HpaII CCGG 1 cut(s) 1152
HphI GGTGA 2 cut(s) 104, 416
Hpy166II GTNNAC 5 cut(s) 340, 706, 895, 998, 1183
Hpy188I TCNGA 4 cut(s) 385, 667, 890, 1013
Hpy188III TCNNGA 3 cut(s) 302, 754, 1117
Hpy8I GTNNAC 5 cut(s) 340, 706, 895, 998, 1183
HpyAV CCTTC 3 cut(s) 368, 667, 704
HpyCH4III ACNGT 4 cut(s) 218, 488, 935, 995
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 9 cut(s) 72, 86, 204, 604, 680, 815, 870, 882, 1005
HpyF10VI GCNNNNNNNGC 8 cut(s) 187, 201, 532, 876, 968, 1067, 1152, 1161
HpyF3I CTNAG 4 cut(s) 372, 755, 887, 1203
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 3 cut(s) 32, 68, 326
KflI GGGWCCC 1 cut(s) 166
KpnI GGTACC 1 cut(s) 217
KroI GCCGGC 1 cut(s) 1151
KroNI GCCGGC 1 cut(s) 1153
Kzo9I GATC 5 cut(s) 139, 298, 461, 617, 634
LmnI GCTCC 4 cut(s) 178, 195, 918, 1067
Lsp1109I GCAGC 2 cut(s) 866, 983
LweI GCATC 6 cut(s) 59, 190, 517, 859, 1014, 1048
MaeI CTAG 3 cut(s) 197, 957, 1097
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 4 cut(s) 422, 950, 1126, 1172
MalI GATC 5 cut(s) 141, 300, 463, 619, 636
MboI GATC 5 cut(s) 139, 298, 461, 617, 634
MboII GAAGA 7 cut(s) 50, 68, 110, 113, 212, 284, 1187
MhlI GDGCHC 3 cut(s) 517, 677, 735
MluCI AATT 2 cut(s) 48, 159
MlyI GAGTC 2 cut(s) 123, 483
MroNI GCCGGC 1 cut(s) 1151
MseI TTAA 4 cut(s) 291, 725, 842, 990
MslI CAYNNNNRTG 3 cut(s) 33, 680, 855
MspA1I CMGCKG 1 cut(s) 786
MspI CCGG 1 cut(s) 1152
MspR9I CCNGG 4 cut(s) 126, 493, 980, 1190
MvaI CCWGG 4 cut(s) 126, 493, 980, 1190
MwoI GCNNNNNNNGC 8 cut(s) 187, 201, 532, 876, 968, 1067, 1152, 1161
NaeI GCCGGC 1 cut(s) 1153
NcoI CCATGG 1 cut(s) 64
NdeII GATC 5 cut(s) 139, 298, 461, 617, 634
NgoMIV GCCGGC 1 cut(s) 1151
NlaIII CATG 3 cut(s) 32, 68, 326
NlaIV GGNNCC 7 cut(s) 167, 168, 215, 450, 687, 827, 984
NmuCI GTSAC 3 cut(s) 422, 1126, 1172
NspI RCATGY 1 cut(s) 326
NspV TTCGAA 1 cut(s) 1046
PaeI GCATGC 1 cut(s) 326
PdiI GCCGGC 1 cut(s) 1153
PfeI GAWTC 1 cut(s) 911
PflMI CCANNNNNTGG 1 cut(s) 504
PfoI TCCNGGA 1 cut(s) 124
PkrI GCNGC 3 cut(s) 104, 881, 973
PleI GAGTC 2 cut(s) 123, 482
PmaCI CACGTG 1 cut(s) 89
PmlI CACGTG 1 cut(s) 89
PpsI GAGTC 2 cut(s) 123, 482
Ppu21I YACGTR 1 cut(s) 89
PpuMI RGGWCCY 3 cut(s) 166, 448, 609
PshAI GACNNNNGTC 1 cut(s) 1124
PsiI TTATAA 1 cut(s) 560
Psp5II RGGWCCY 3 cut(s) 166, 448, 609
Psp6I CCWGG 4 cut(s) 124, 491, 978, 1188
PspCI CACGTG 1 cut(s) 89
PspGI CCWGG 4 cut(s) 124, 491, 978, 1188
PspN4I GGNNCC 7 cut(s) 167, 168, 215, 450, 687, 827, 984
PspPI GGNCC 6 cut(s) 166, 448, 495, 609, 654, 960
PspPPI RGGWCCY 3 cut(s) 166, 448, 609
PvuII CAGCTG 1 cut(s) 786
RsaI GTAC 3 cut(s) 215, 411, 791
RsaNI GTAC 3 cut(s) 214, 410, 790
RseI CAYNNNNRTG 3 cut(s) 33, 680, 855
SaqAI TTAA 4 cut(s) 291, 725, 842, 990
SatI GCNGC 3 cut(s) 103, 880, 972
Sau3AI GATC 5 cut(s) 139, 298, 461, 617, 634
Sau96I GGNCC 6 cut(s) 166, 448, 495, 609, 654, 960
SchI GAGTC 2 cut(s) 123, 483
ScrFI CCNGG 4 cut(s) 126, 493, 980, 1190
SduI GDGCHC 3 cut(s) 517, 677, 735
SfaNI GCATC 6 cut(s) 59, 190, 517, 859, 1014, 1048
SfuI TTCGAA 1 cut(s) 1046
SinI GGWCC 5 cut(s) 166, 448, 495, 609, 654
SmiMI CAYNNNNRTG 3 cut(s) 33, 680, 855
SmlI CTYRAG 1 cut(s) 613
SmoI CTYRAG 1 cut(s) 613
SphI GCATGC 1 cut(s) 326
Sse9I AATT 2 cut(s) 48, 159
SsiI CCGC 4 cut(s) 103, 193, 823, 1162
SspI AATATT 1 cut(s) 380
SspMI CTAG 3 cut(s) 197, 957, 1097
StyD4I CCNGG 4 cut(s) 124, 491, 978, 1188
StyI CCWWGG 2 cut(s) 64, 963
TaaI ACNGT 4 cut(s) 218, 488, 935, 995
TaiI ACGT 1 cut(s) 91
TaqI TCGA 4 cut(s) 301, 745, 930, 1046
TasI AATT 2 cut(s) 48, 159
TatI WGTACW 1 cut(s) 409
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 1 cut(s) 911
Tru1I TTAA 4 cut(s) 291, 725, 842, 990
Tru9I TTAA 4 cut(s) 291, 725, 842, 990
TscAI CASTG 4 cut(s) 493, 682, 838, 1190
TseFI GTSAC 3 cut(s) 422, 1126, 1172
TseI GCWGC 2 cut(s) 879, 971
Tsp45I GTSAC 3 cut(s) 422, 1126, 1172
TspDTI ATGAA 2 cut(s) 649, 682
TspGWI ACGGA 2 cut(s) 239, 819
TspRI CASTG 4 cut(s) 493, 682, 838, 1190
Van91I CCANNNNNTGG 1 cut(s) 504
VpaK11BI GGWCC 5 cut(s) 166, 448, 495, 609, 654
XagI CCTNNNNNAGG 1 cut(s) 758
XceI RCATGY 1 cut(s) 326
XmiI GTMKAC 2 cut(s) 339, 705
XspI CTAG 3 cut(s) 197, 957, 1097
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.