Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8150054.1

Orthogroup ID

OG0002477

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 374

Gene Structure 373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8150054.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 373 bp

atgcttcgcaggcgacatttttttggctcgtgtgttataaataactgcctctatgttgctggtggagagaatgagggggtgcataggtccttgagatcagcagaagtctatgatcccaacaagaatagatggtccttcatttcagatatgagcactgcaatggtgcctttcattggggttgtctacgaaggcaaatggttcttaaaggggctcgggtctcatcgacaagtcctgagtgaggtctatcaaccagaaaatgacagctggtactctgtgtatgacggaatggttgcaggctggaggaaccccagtgcttctttaaatgggcatctctatgctttggagtgcaaggatggctgcaaactcagagttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

124

Amino Acids

14.13

Weight (kDa)

8.38

Isoelectric Point (pI)

61.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55270 AT1G55270
fragaria_vesca	FvH4_1g03541 FvH4_1g03541 FvH4_3g45191 FvH4_3g45191
malus_domestica	MD02G1034600.v1.1 MD03G1007500.v1.1 MD15G1175400.v1.1
prunus_persica	Prupe.6G009200_v2.0.a1 Prupe.6G009200_v2.0.a1 Prupe.7G240700_v2.0.a1 Prupe.7G240700_v2.0.a1
pyrus_communis	pycom03g00770 pycom03g00780 pycom11g00680 pycom15g15680
rosa_chinensis	RchiOBHm_Chr2g0088991 RchiOBHm_Chr2g0089041 RchiOBHm_Chr5g0082421 RchiOBHm_Chr5g0082431 RchiOBHm_Chr5g0082801
rosa_laevigata	RLG00000015985 RLG00000036990
rosa_multiflora	Rmu_co8150054.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001640 Rroxscaffold_2G00152320
rosa_rugosa	Rorug01G0486800 Rorug01G0486900 Rorug05G0478000 Rorug05G0479700
rosa_samantha	Rh2AG042300 Rh2BG040800 Rh2CG042400 Rh2DG041300 Rh5AG529500 Rh5AG530200 Rh5BG557100 Rh5CG579900
rosa_wichuraiana	Rw2G003520 Rw5G049580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	38
AccB1I	GGYRCC	1 cut(s)	163
AccI	GTMKAC	1 cut(s)	183
AclWI	GGATC	1 cut(s)	107
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	2 cut(s)	173, 238
AluBI	AGCT	1 cut(s)	264
AluI	AGCT	1 cut(s)	264
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	1 cut(s)	107
Ama87I	CYCGRG	1 cut(s)	212
ApeKI	GCWGC	1 cut(s)	357
AspS9I	GGNCC	2 cut(s)	87, 132
AvaI	CYCGRG	1 cut(s)	212
AvaII	GGWCC	2 cut(s)	87, 132
BanI	GGYRCC	1 cut(s)	163
BanII	GRGCYC	1 cut(s)	213
BauI	CACGAG	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	1 cut(s)	344
BccI	CCATC	2 cut(s)	123, 347
BcoDI	GTCTC	1 cut(s)	222
BisI	GCNGC	1 cut(s)	358
BlsI	GCNGC	1 cut(s)	359
Bme18I	GGWCC	2 cut(s)	87, 132
BmeT110I	CYCGRG	1 cut(s)	212
BmgT120I	GGNCC	2 cut(s)	87, 132
BmiI	GGNNCC	2 cut(s)	165, 305
BmrI	ACTGGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	337
BmuI	ACTGGG	1 cut(s)	303
BpmI	CTGGAG	1 cut(s)	319
BpuEI	CTTGAG	1 cut(s)	112
BsaI	GGTCTC	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	2 cut(s)	173, 238
Bse1I	ACTGG	1 cut(s)	309
Bse3DI	GCAATG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	2 cut(s)	173, 238
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	224
BseNI	ACTGG	1 cut(s)	309
BseXI	GCAGC	1 cut(s)	344
BshNI	GGYRCC	1 cut(s)	163
BsiHKAI	GWGCWC	1 cut(s)	155
BsiHKCI	CYCGRG	1 cut(s)	212
BslI	CCNNNNNNNGG	2 cut(s)	173, 238
BsmAI	GTCTC	1 cut(s)	222
Bso31I	GGTCTC	1 cut(s)	222
BsoBI	CYCGRG	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	155, 213
Bsp143I	GATC	2 cut(s)	95, 112
BspCNI	CTCAG	1 cut(s)	225
BspLI	GGNNCC	2 cut(s)	165, 305
BspPI	GGATC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	163
BspTNI	GGTCTC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	309
BssMI	GATC	2 cut(s)	95, 112
BssSI	CACGAG	1 cut(s)	28
Bst2BI	CACGAG	1 cut(s)	28
BstC8I	GCNNGC	2 cut(s)	11, 295
BstDEI	CTNAG	2 cut(s)	233, 365
BstENI	CCTNNNNNAGG	1 cut(s)	236
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	2 cut(s)	98, 115
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	2 cut(s)	95, 112
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 354
BstV1I	GCAGC	1 cut(s)	344
BtsCI	GGATG	1 cut(s)	358
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	2 cut(s)	153, 316
Cac8I	GCNNGC	2 cut(s)	11, 295
Cfr13I	GGNCC	2 cut(s)	87, 132
Csp6I	GTAC	1 cut(s)	268
CviJI	RGCY	5 cut(s)	27, 211, 264, 297, 357
CviKI_1	RGCY	5 cut(s)	27, 211, 264, 297, 357
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	2 cut(s)	233, 365
DpnI	GATC	2 cut(s)	97, 114
DpnII	GATC	2 cut(s)	95, 112
DraI	TTTAAA	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	222
Eco47I	GGWCC	2 cut(s)	87, 132
Eco88I	CYCGRG	1 cut(s)	212
EcoNI	CCTNNNNNAGG	1 cut(s)	236
EcoO109I	RGGNCCY	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	213
FaiI	YATR	7 cut(s)	38, 54, 84, 111, 149, 279, 336
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	358
FokI	GGATG	1 cut(s)	365
FriOI	GRGCYC	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	358
GluI	GCNGC	1 cut(s)	358
GsuI	CTGGAG	1 cut(s)	319
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	2 cut(s)	145, 368
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	2 cut(s)	145, 182
HpyCH4V	TGCA	5 cut(s)	82, 158, 293, 348, 360
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 354
HpyF3I	CTNAG	2 cut(s)	233, 365
Kzo9I	GATC	2 cut(s)	95, 112
LpnPI	CCDG	7 cut(s)	45, 245, 250, 264, 279, 283, 322
Lsp1109I	GCAGC	1 cut(s)	344
LweI	GCATC	1 cut(s)	337
MalI	GATC	2 cut(s)	97, 114
MboI	GATC	2 cut(s)	95, 112
MhlI	GDGCHC	2 cut(s)	155, 213
MnlI	CCTC	4 cut(s)	59, 67, 232, 294
MseI	TTAA	2 cut(s)	203, 320
MslI	CAYNNNNRTG	2 cut(s)	158, 333
MspA1I	CMGCKG	1 cut(s)	264
MwoI	GCNNNNNNNGC	2 cut(s)	10, 354
NdeII	GATC	2 cut(s)	95, 112
NlaIV	GGNNCC	2 cut(s)	165, 305
PkrI	GCNGC	1 cut(s)	359
PpuMI	RGGWCCY	1 cut(s)	87
PsiI	TTATAA	1 cut(s)	38
Psp5II	RGGWCCY	1 cut(s)	87
PspN4I	GGNNCC	2 cut(s)	165, 305
PspPI	GGNCC	2 cut(s)	87, 132
PspPPI	RGGWCCY	1 cut(s)	87
PvuII	CAGCTG	1 cut(s)	264
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
RseI	CAYNNNNRTG	2 cut(s)	158, 333
SaqAI	TTAA	2 cut(s)	203, 320
SatI	GCNGC	1 cut(s)	358
Sau3AI	GATC	2 cut(s)	95, 112
Sau96I	GGNCC	2 cut(s)	87, 132
SduI	GDGCHC	2 cut(s)	155, 213
SetI	ASST	3 cut(s)	89, 243, 266
SfaNI	GCATC	1 cut(s)	337
SinI	GGWCC	2 cut(s)	87, 132
SmiMI	CAYNNNNRTG	2 cut(s)	158, 333
SmlI	CTYRAG	1 cut(s)	91
SmoI	CTYRAG	1 cut(s)	91
TaqI	TCGA	1 cut(s)	223
Tru1I	TTAA	2 cut(s)	203, 320
Tru9I	TTAA	2 cut(s)	203, 320
TscAI	CASTG	2 cut(s)	160, 316
TseI	GCWGC	1 cut(s)	357
TspDTI	ATGAA	2 cut(s)	127, 160
TspGWI	ACGGA	1 cut(s)	297
TspRI	CASTG	2 cut(s)	160, 316
VpaK11BI	GGWCC	2 cut(s)	87, 132
XagI	CCTNNNNNAGG	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.