Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002477

Physical Location & Seq

Genomic Coordinates Reverse (-)

66120983 .. 66121866

Gene Structure 884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0479700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAATCGCAGCTGCAACGCAAGAGGTATGCTTTCTTTTCTTCACACTACTGCTTCTCCTGTTGTTCCGGTTAACAATTTTATGGGTTTGTATCATTCCCAATCGTCATACCCAACCAAATCCAGAGAAACCCATCGAAATCGACCCAAAATCACTAATCTTGAGGATGCCTTGAAGGCGTCACCACCTTCAACACTGAACACTCTAATCAACGGCTTTGTTCTCGAAAATCGACCTGCTGAAGCAGCACGAATTTTCGGCAAAATGGTGGAGGGAGGTCATTGTAAGCCGGATGTGTTTACTTTCAACACACTGATAAAGGGCTTTTGCATGATAGAAATGATTTGTAGAGGTATTGCTCCGGACGTTGTTACTTACACCTCTTTGATTCAAGGAGTTTGCAATTTAGGCCAGTGGAAAGAAGCTACAAGGTTGCTTGATGAAAGAGAAAAATTCACCAACAGTGTCTGGACACTTAGGGGACTTTCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

164

Amino Acids

18.35

Weight (kDa)

9.1

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	65 - 110	6.8e-12	PPR repeat family
PPR_1	PF12854	95 - 110	2.3e-07	PPR repeat
PPR_2	PF13041	113 - 135	2.4e-06	PPR repeat family
PPR_1	PF12854	117 - 148	1.6e-10	PPR repeat
PPR_2	PF13041	121 - 151	1.5e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55270 AT1G55270
fragaria_vesca	FvH4_1g03541 FvH4_1g03541 FvH4_3g45191 FvH4_3g45191
malus_domestica	MD02G1034600.v1.1 MD03G1007500.v1.1 MD15G1175400.v1.1
prunus_persica	Prupe.6G009200_v2.0.a1 Prupe.6G009200_v2.0.a1 Prupe.7G240700_v2.0.a1 Prupe.7G240700_v2.0.a1
pyrus_communis	pycom03g00770 pycom03g00780 pycom11g00680 pycom15g15680
rosa_chinensis	RchiOBHm_Chr2g0088991 RchiOBHm_Chr2g0089041 RchiOBHm_Chr5g0082421 RchiOBHm_Chr5g0082431 RchiOBHm_Chr5g0082801
rosa_laevigata	RLG00000015985 RLG00000036990
rosa_multiflora	Rmu_co8150054.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001640 Rroxscaffold_2G00152320
rosa_rugosa	Rorug01G0486800 Rorug01G0486900 Rorug05G0478000 Rorug05G0479700
rosa_samantha	Rh2AG042300 Rh2BG040800 Rh2CG042400 Rh2DG041300 Rh5AG529500 Rh5AG530200 Rh5BG557100 Rh5CG579900
rosa_wichuraiana	Rw2G003520 Rw5G049580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AccIII	TCCGGA	1 cut(s)	361
AcsI	RAATTY	2 cut(s)	252, 452
AcuI	CTGAAG	1 cut(s)	261
AcyI	GRCGYC	1 cut(s)	179
AgsI	TTSAA	4 cut(s)	175, 192, 307, 392
AluBI	AGCT	2 cut(s)	12, 425
AluI	AGCT	2 cut(s)	12, 425
AlwNI	CAGNNNCTG	1 cut(s)	468
Aor13HI	TCCGGA	1 cut(s)	361
AoxI	GGCC	1 cut(s)	409
ApeKI	GCWGC	3 cut(s)	9, 12, 245
ApoI	RAATTY	2 cut(s)	252, 452
AsuHPI	GGTGA	2 cut(s)	174, 448
BbvI	GCAGC	2 cut(s)	21, 257
BccI	CCATC	1 cut(s)	141
BceAI	ACGGC	1 cut(s)	229
BfuAI	ACCTGC	1 cut(s)	244
BglI	GCCNNNNNGGC	1 cut(s)	176
BisI	GCNGC	3 cut(s)	10, 13, 246
BlsI	GCNGC	3 cut(s)	11, 14, 247
BmsI	GCATC	1 cut(s)	157
BpuEI	CTTGAG	1 cut(s)	182
BsaHI	GRCGYC	1 cut(s)	179
BsaWI	WCCGGW	2 cut(s)	67, 361
BsaXI	ACNNNNNCTCC	2 cut(s)	40, 70
Bse1I	ACTGG	1 cut(s)	412
BseAI	TCCGGA	1 cut(s)	361
BseGI	GGATG	2 cut(s)	172, 298
BseNI	ACTGG	1 cut(s)	412
BseXI	GCAGC	2 cut(s)	21, 257
BshFI	GGCC	1 cut(s)	411
BsiSI	CCGG	3 cut(s)	68, 290, 362
BsnI	GGCC	1 cut(s)	411
Bsp13I	TCCGGA	1 cut(s)	361
BspANI	GGCC	1 cut(s)	411
BspEI	TCCGGA	1 cut(s)	361
BspMI	ACCTGC	1 cut(s)	244
BsrI	ACTGG	1 cut(s)	412
BssNI	GRCGYC	1 cut(s)	179
Bst4CI	ACNGT	1 cut(s)	464
BstACI	GRCGYC	1 cut(s)	179
BstDEI	CTNAG	1 cut(s)	476
BstF5I	GGATG	2 cut(s)	172, 298
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 245, 408
BstV1I	GCAGC	2 cut(s)	21, 257
BsuRI	GGCC	1 cut(s)	411
BtsCI	GGATG	2 cut(s)	172, 298
BtsIMutI	CAGTG	4 cut(s)	194, 311, 419, 469
BveI	ACCTGC	1 cut(s)	244
CaiI	CAGNNNCTG	1 cut(s)	468
CseI	GACGC	1 cut(s)	168
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	6 cut(s)	12, 216, 289, 324, 411, 425
CviKI_1	RGCY	6 cut(s)	12, 216, 289, 324, 411, 425
DdeI	CTNAG	1 cut(s)	476
Eco57I	CTGAAG	1 cut(s)	261
FaeI	CATG	1 cut(s)	334
FaiI	YATR	4 cut(s)	29, 83, 109, 332
FatI	CATG	1 cut(s)	330
Fnu4HI	GCNGC	3 cut(s)	10, 13, 246
FokI	GGATG	2 cut(s)	179, 305
Fsp4HI	GCNGC	3 cut(s)	10, 13, 246
GluI	GCNGC	3 cut(s)	10, 13, 246
HaeIII	GGCC	1 cut(s)	411
HapII	CCGG	3 cut(s)	68, 290, 362
HgaI	GACGC	1 cut(s)	168
Hin1I	GRCGYC	1 cut(s)	179
Hin1II	CATG	1 cut(s)	334
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	2 cut(s)	4, 388
HpaI	GTTAAC	1 cut(s)	73
HpaII	CCGG	3 cut(s)	68, 290, 362
HphI	GGTGA	2 cut(s)	174, 448
Hpy166II	GTNNAC	2 cut(s)	73, 300
Hpy188I	TCNGA	1 cut(s)	490
Hpy188III	TCNNGA	5 cut(s)	123, 161, 224, 362, 469
Hpy8I	GTNNAC	2 cut(s)	73, 300
HpyAV	CCTTC	2 cut(s)	169, 198
HpyCH4III	ACNGT	1 cut(s)	464
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	3 cut(s)	15, 330, 402
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 245, 408
HpyF3I	CTNAG	1 cut(s)	476
HpySE526I	ACGT	1 cut(s)	366
Hsp92I	GRCGYC	1 cut(s)	179
Hsp92II	CATG	1 cut(s)	334
Kpn2I	TCCGGA	1 cut(s)	361
KspAI	GTTAAC	1 cut(s)	73
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	8 cut(s)	72, 81, 136, 249, 303, 375, 425, 454
Lsp1109I	GCAGC	2 cut(s)	21, 257
LweI	GCATC	1 cut(s)	157
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	2 cut(s)	180, 370
MboII	GAAGA	1 cut(s)	32
MluCI	AATT	4 cut(s)	76, 252, 403, 452
MnlI	CCTC	6 cut(s)	17, 157, 265, 269, 344, 391
MroI	TCCGGA	1 cut(s)	361
MseI	TTAA	1 cut(s)	72
MspA1I	CMGCKG	1 cut(s)	12
MspI	CCGG	3 cut(s)	68, 290, 362
MwoI	GCNNNNNNNGC	3 cut(s)	176, 245, 408
NlaIII	CATG	1 cut(s)	334
NmuCI	GTSAC	1 cut(s)	180
PfeI	GAWTC	2 cut(s)	4, 388
PkrI	GCNGC	3 cut(s)	11, 14, 247
PstNI	CAGNNNCTG	1 cut(s)	468
PvuII	CAGCTG	1 cut(s)	12
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	3 cut(s)	10, 13, 246
SfaNI	GCATC	1 cut(s)	157
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	4 cut(s)	76, 252, 403, 452
TaaI	ACNGT	1 cut(s)	464
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	4 cut(s)	136, 142, 225, 232
TasI	AATT	4 cut(s)	76, 252, 403, 452
TfiI	GAWTC	2 cut(s)	4, 388
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	4 cut(s)	201, 318, 419, 469
TseFI	GTSAC	1 cut(s)	180
TseI	GCWGC	3 cut(s)	9, 12, 245
Tsp45I	GTSAC	1 cut(s)	180
TspDTI	ATGAA	2 cut(s)	17, 456
TspRI	CASTG	4 cut(s)	201, 318, 419, 469
XapI	RAATTY	2 cut(s)	252, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.