Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002477

Physical Location & Seq

Genomic Coordinates Reverse (-)

88420806 .. 88422705

Gene Structure 1900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35663

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAGCACAGCTATGGTTCCCTTTATTGGGGTTGTTCACGATGGTATGTGGTTTCTAAAAGGACTTGGATCGCACCGTGAGGTAATGAGTGAAGCCTATTCTCCTGAAGCTAACACTTGGAACCCCATTAGTGATGGGATGGTTGCTGGTTGGCGCAACCCAAGTATTTCTTTAAATGGGCAACTCTATGCTCTGGATTGCCGTGATGGGTGCAAGGTTAGGGTTTATGATAGAGTGACAGATTCATGGAACAAATTTATTGATAGCAAGCTTCATTTGGGCAGTTCTCGTGCTTTGGAGGCTGCTGCACTTGTTCCTCTCAATGTTGAAAGCAACCCTAGCCTTTGGGAAAATATTGCTGGTAAAGGTCATTTCAGAACTCTAGTCTCGAATTTATGGTCAAGTATAGCAGGCCGAACTGGTTTGAAGAGTCACTATACACTGTCAAGTGCTCCAAGCATGACAACTGGTATTCATGTTGCTTCTGCGTGTGGGAATGTGGGAGGCAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

171

Amino Acids

18.45

Weight (kDa)

8.49

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55270 AT1G55270
fragaria_vesca	FvH4_1g03541 FvH4_1g03541 FvH4_3g45191 FvH4_3g45191
malus_domestica	MD02G1034600.v1.1 MD03G1007500.v1.1 MD15G1175400.v1.1
prunus_persica	Prupe.6G009200_v2.0.a1 Prupe.6G009200_v2.0.a1 Prupe.7G240700_v2.0.a1 Prupe.7G240700_v2.0.a1
pyrus_communis	pycom03g00770 pycom03g00780 pycom11g00680 pycom15g15680
rosa_chinensis	RchiOBHm_Chr2g0088991 RchiOBHm_Chr2g0089041 RchiOBHm_Chr5g0082421 RchiOBHm_Chr5g0082431 RchiOBHm_Chr5g0082801
rosa_laevigata	RLG00000015985 RLG00000036990
rosa_multiflora	Rmu_co8150054.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001640 Rroxscaffold_2G00152320
rosa_rugosa	Rorug01G0486800 Rorug01G0486900 Rorug05G0478000 Rorug05G0479700
rosa_samantha	Rh2AG042300 Rh2BG040800 Rh2CG042400 Rh2DG041300 Rh5AG529500 Rh5AG530200 Rh5BG557100 Rh5CG579900
rosa_wichuraiana	Rw2G003520 Rw5G049580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	76
AcsI	RAATTY	2 cut(s)	254, 391
AcuI	CTGAAG	1 cut(s)	126
AfiI	CCNNNNNNNGG	2 cut(s)	26, 27
AgsI	TTSAA	2 cut(s)	329, 427
AluBI	AGCT	3 cut(s)	11, 110, 271
AluI	AGCT	3 cut(s)	11, 110, 271
Alw21I	GWGCWC	2 cut(s)	8, 454
Alw26I	GTCTC	1 cut(s)	391
AlwI	GGATC	1 cut(s)	76
AoxI	GGCC	1 cut(s)	412
ApeKI	GCWGC	2 cut(s)	302, 305
ApoI	RAATTY	2 cut(s)	254, 391
ArsI	GACNNNNNNTTYG	2 cut(s)	383, 415
AspLEI	GCGC	1 cut(s)	156
BauI	CACGAG	1 cut(s)	288
Bbv12I	GWGCWC	2 cut(s)	8, 454
BbvI	GCAGC	2 cut(s)	289, 292
BccI	CCATC	4 cut(s)	35, 128, 133, 200
BceAI	ACGGC	1 cut(s)	186
BcoDI	GTCTC	1 cut(s)	391
BfaI	CTAG	2 cut(s)	339, 383
BisI	GCNGC	2 cut(s)	303, 306
BlsI	GCNGC	2 cut(s)	304, 307
BmiI	GGNNCC	2 cut(s)	18, 122
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 27
Bse1I	ACTGG	2 cut(s)	424, 472
BseGI	GGATG	1 cut(s)	144
BseLI	CCNNNNNNNGG	2 cut(s)	26, 27
BseNI	ACTGG	2 cut(s)	424, 472
BseXI	GCAGC	2 cut(s)	289, 292
BsgI	GTGCAG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	414
BsiHKAI	GWGCWC	2 cut(s)	8, 454
BslI	CCNNNNNNNGG	2 cut(s)	26, 27
BsmAI	GTCTC	1 cut(s)	391
BsnI	GGCC	1 cut(s)	414
Bsp1286I	GDGCHC	2 cut(s)	8, 454
Bsp143I	GATC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	414
BspLI	GGNNCC	2 cut(s)	18, 122
BspPI	GGATC	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	424, 472
BssMI	GATC	1 cut(s)	68
BssSI	CACGAG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	77, 444
Bst6I	CTCTTC	1 cut(s)	422
BstC8I	GCNNGC	2 cut(s)	269, 412
BstF5I	GGATG	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	1 cut(s)	71
BstMAI	GTCTC	1 cut(s)	391
BstMBI	GATC	1 cut(s)	68
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 339
BstV1I	GCAGC	2 cut(s)	289, 292
BsuRI	GGCC	1 cut(s)	414
BtsCI	GGATG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	440
Cac8I	GCNNGC	2 cut(s)	269, 412
CfoI	GCGC	1 cut(s)	156
CviAII	CATG	3 cut(s)	246, 460, 476
CviJI	RGCY	7 cut(s)	11, 95, 110, 271, 302, 342, 414
CviKI_1	RGCY	7 cut(s)	11, 95, 110, 271, 302, 342, 414
DpnI	GATC	1 cut(s)	70
DpnII	GATC	1 cut(s)	68
DraI	TTTAAA	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Eco57I	CTGAAG	1 cut(s)	126
FaeI	CATG	3 cut(s)	249, 463, 479
FalI	AAGNNNNNCTT	2 cut(s)	154, 186
FatI	CATG	3 cut(s)	245, 459, 475
Fnu4HI	GCNGC	2 cut(s)	303, 306
FokI	GGATG	1 cut(s)	151
Fsp4HI	GCNGC	2 cut(s)	303, 306
FspBI	CTAG	2 cut(s)	339, 383
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	2 cut(s)	303, 306
HaeIII	GGCC	1 cut(s)	414
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	3 cut(s)	249, 463, 479
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	2 cut(s)	242, 430
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	377
Hpy188III	TCNNGA	4 cut(s)	38, 104, 194, 388
Hpy8I	GTNNAC	1 cut(s)	37
HpyCH4III	ACNGT	2 cut(s)	77, 444
HpyCH4V	TGCA	2 cut(s)	213, 308
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 339
Hsp92II	CATG	3 cut(s)	249, 463, 479
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	68
LmnI	GCTCC	1 cut(s)	457
LpnPI	CCDG	7 cut(s)	117, 132, 179, 345, 396, 405, 453
Lsp1109I	GCAGC	2 cut(s)	289, 292
MaeI	CTAG	2 cut(s)	339, 383
MaeIII	GTNAC	2 cut(s)	235, 431
MalI	GATC	1 cut(s)	70
MboI	GATC	1 cut(s)	68
MboII	GAAGA	1 cut(s)	439
MhlI	GDGCHC	2 cut(s)	8, 454
MluCI	AATT	2 cut(s)	254, 391
MlyI	GAGTC	1 cut(s)	439
MnlI	CCTC	4 cut(s)	73, 292, 327, 497
MseI	TTAA	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	299, 339
NdeII	GATC	1 cut(s)	68
NlaIII	CATG	3 cut(s)	249, 463, 479
NlaIV	GGNNCC	2 cut(s)	18, 122
NmuCI	GTSAC	2 cut(s)	235, 431
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	304, 307
PleI	GAGTC	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	438
PspN4I	GGNNCC	2 cut(s)	18, 122
RseI	CAYNNNNRTG	1 cut(s)	11
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	2 cut(s)	303, 306
Sau3AI	GATC	1 cut(s)	68
SchI	GAGTC	1 cut(s)	439
SduI	GDGCHC	2 cut(s)	8, 454
SetI	ASST	6 cut(s)	13, 84, 112, 219, 273, 370
SmiMI	CAYNNNNRTG	1 cut(s)	11
Sse9I	AATT	2 cut(s)	254, 391
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	2 cut(s)	339, 383
TaaI	ACNGT	2 cut(s)	77, 444
TaqI	TCGA	1 cut(s)	389
TasI	AATT	2 cut(s)	254, 391
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TscAI	CASTG	1 cut(s)	447
TseFI	GTSAC	2 cut(s)	235, 431
TseI	GCWGC	2 cut(s)	302, 305
Tsp45I	GTSAC	2 cut(s)	235, 431
TspDTI	ATGAA	3 cut(s)	234, 263, 464
TspRI	CASTG	1 cut(s)	447
XapI	RAATTY	2 cut(s)	254, 391
XspI	CTAG	2 cut(s)	339, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.