RLG00000015985

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002477
Physical Location & Seq
Reverse (-)
3006433 .. 3008863
2431 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015985

Sequence Viewer

Length: 1293 bp
ATGGACAGAAGAAGAATGATACAGCCTCCATTGGTGGATAGCACAGCATGTTTATGCAGAGTTGATGCTGGTCTTAAAACTGTTGCTGGAGCAAAAAAGTATGTCCCTGGGGCAAAGCTTTGTTTGCAACCAGACATTAAAGCATCCATTCATCCAACTAGGAGTAAGCCTACACGTGGTGAGAGTAGCCGCAATCAATCCCCTCTTCTTCCTGGACTCCCTGATGATCTTGCTATTGCTTGCCTAATTCGGGTCCCAAGAGCGGAGCATCGCAAGCTCCGCCTAGTTTGCAAAAGATGGTACCGTCTTCTGGCTGGCAACTTCTTTTACTCCCTCCGTAAGAGCATTGGCATTGCTGAAGAATGGATATACTTGATCAAAAGAGATCGAGATGGGAAAATATCTTGGCATGCCTTTGACCCTGTATACCAGCTATGGCAGTCCCTTCCTCCTGTCCCTAAGGAATATTCTGAAGCTCTTGGATTTGGTTGTGCTGTGCTCAGTGGCTGTCACCTCTATCTGTTTGGAGGAAAGGACCCTCTAAAGGGATCAATGAGACGAGTCATTTTTTACAGTGCCAGGACCAATAAATGGCATCGTGCCCCAGATATGCTTCGCAGACGACATTTTTTTGGCTCGTGTGTTATAAATAACTGCCTCTATGTTGCTGGTGGAGAGAATGAGGGGGTGCATAGGTCCTTGAGATCAGCAGAAGTCTATGATCCCAACAAGAATAGATGGTCCTTCATTTCAGATATGAGCACTGCAATGGTGCCTTTCATCGGGGTTGTCTACGAAGGCAAATGGTTCTTAAAGGGGCTTGGGTCTCATCGACAAGTCCTGAGTGAGGTCTATCAACCAGAAAACGACAGCTGGTACTCTGTGTATGACGGAATGGTTGCAGGCTGGAGGAACCCCAGTGCTTCTTTAAATGGGCATCTCTATGCTTTGGAGTGCAAGGATGGCTGCAAACTCAGAGTTTACGATGAAGCAACTGATTCTTGGAGCAAGCATATCGACAGTAAGATACATTTGGGTAACTCTAGGGCCTTGGAGGCAGCTTCCCTGGTTCCCCTTAACGGTAAACTTTGCATCATCCGAAATAATATGAGTATTTCGCTTGTTGATGTTTCGAAATCAAATGATGCTGGTGGAGCAAGTGCTGAACATCTATGGGAAACTCTAGCAGGCAAAGGGCAGTTCAGGACAATGGTCACAAATCTGTGGTCAAGCCTTGCCGGCAGGAACCGCCTGAAAAGTCACATAGTTCACTGCCAGATTCTTCAAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Kelch_1

Protein Analysis

431

Amino Acids

48.41

Weight (kDa)

9.54

Isoelectric Point (pI)

53.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 71 - 107 5.8e-06 F-box domain
Kelch_KLHDC2_KLHL20_DRC7 PF24681 135 - 295 3.7e-11 KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_Calicin PF13964 144 - 258 7.6e-11 Calicin, beta-propeller domain
Kelch_FKB95 PF25210 149 - 337 5.1e-20 FKB95, Kelch-repeats domain
Beta-prop_Calicin PF13964 182 - 293 2.4e-11 Calicin, beta-propeller domain
Kelch_1 PF01344 207 - 254 3.6e-15 Kelch motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 647
Acc65I GGTACC 1 cut(s) 300
AccB1I GGYRCC 2 cut(s) 300, 772
AccB7I CCANNNNNTGG 1 cut(s) 591
AccBSI CCGCTC 1 cut(s) 263
AccI GTMKAC 2 cut(s) 426, 792
AciI CCGC 4 cut(s) 190, 263, 280, 1249
AclWI GGATC 2 cut(s) 556, 716
AcuI CTGAAG 2 cut(s) 378, 492
AcvI CACGTG 1 cut(s) 176
AdeI CACNNNGTG 1 cut(s) 179
AfaI GTAC 2 cut(s) 302, 878
AflIII ACRYGT 1 cut(s) 173
AgsI TTSAA 1 cut(s) 1286
AjnI CCWGG 4 cut(s) 106, 211, 578, 1065
AluBI AGCT 7 cut(s) 118, 277, 433, 476, 873, 1061, 1289
AluI AGCT 7 cut(s) 118, 277, 433, 476, 873, 1061, 1289
Alw21I GWGCWC 2 cut(s) 501, 764
Alw26I GTCTC 2 cut(s) 550, 831
AlwI GGATC 2 cut(s) 556, 716
AlwNI CAGNNNCTG 1 cut(s) 507
AoxI GGCC 1 cut(s) 1047
ApeKI GCWGC 2 cut(s) 966, 1058
ArsI GACNNNNNNTTYG 2 cut(s) 1211, 1243
Asp718I GGTACC 1 cut(s) 300
AspS9I GGNCC 6 cut(s) 253, 535, 582, 696, 741, 1047
AsuHPI GGTGA 2 cut(s) 191, 503
AsuII TTCGAA 1 cut(s) 1133
AvaII GGWCC 5 cut(s) 253, 535, 582, 696, 741
AxyI CCTNAGG 1 cut(s) 459
BaeGI GKGCMC 1 cut(s) 604
BanI GGYRCC 2 cut(s) 300, 772
BauI CACGAG 1 cut(s) 637
BbrPI CACGTG 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 299
Bbv12I GWGCWC 2 cut(s) 501, 764
BbvI GCAGC 2 cut(s) 953, 1070
BccI CCATC 4 cut(s) 291, 386, 732, 956
BcgI CGANNNNNNTGC 2 cut(s) 997, 1031
BciT130I CCWGG 4 cut(s) 108, 213, 580, 1067
BclI TGATCA 1 cut(s) 375
BcoDI GTCTC 2 cut(s) 550, 831
BfaI CTAG 4 cut(s) 159, 284, 1044, 1184
BglI GCCNNNNNGGC 2 cut(s) 1055, 1239
BisI GCNGC 3 cut(s) 190, 967, 1059
BlsI GCNGC 3 cut(s) 191, 968, 1060
Bme1390I CCNGG 4 cut(s) 108, 213, 580, 1067
Bme18I GGWCC 5 cut(s) 253, 535, 582, 696, 741
BmgT120I GGNCC 6 cut(s) 253, 535, 582, 696, 741, 1047
BmiI GGNNCC 8 cut(s) 254, 255, 302, 537, 774, 914, 1071, 1247
BmrFI CCNGG 4 cut(s) 108, 213, 580, 1067
BmrI ACTGGG 1 cut(s) 912
BmsI GCATC 7 cut(s) 55, 152, 277, 604, 946, 1101, 1135
BmuI ACTGGG 1 cut(s) 912
BoxI GACNNNNGTC 1 cut(s) 1211
BpiI GAAGAC 1 cut(s) 299
BpmI CTGGAG 2 cut(s) 108, 928
Bpu14I TTCGAA 1 cut(s) 1133
BpuEI CTTGAG 1 cut(s) 721
BsaAI YACGTR 1 cut(s) 176
BsaI GGTCTC 1 cut(s) 831
BsaJI CCNNGG 4 cut(s) 106, 107, 1050, 1065
Bse118I RCCGGY 1 cut(s) 1238
Bse1I ACTGG 1 cut(s) 918
Bse21I CCTNAGG 1 cut(s) 459
Bse3DI GCAATG 2 cut(s) 351, 774
BseBI CCWGG 4 cut(s) 108, 213, 580, 1067
BseDI CCNNGG 4 cut(s) 106, 107, 1050, 1065
BseGI GGATG 4 cut(s) 143, 151, 967, 1095
BseMI GCAATG 2 cut(s) 351, 774
BseMII CTCAG 3 cut(s) 514, 833, 988
BseNI ACTGG 1 cut(s) 918
BseSI GKGCMC 1 cut(s) 604
BseXI GCAGC 2 cut(s) 953, 1070
BshFI GGCC 1 cut(s) 1049
BshNI GGYRCC 2 cut(s) 300, 772
BsiHKAI GWGCWC 2 cut(s) 501, 764
BsiSI CCGG 1 cut(s) 1239
BslFI GGGAC 4 cut(s) 89, 239, 427, 440
BsmAI GTCTC 2 cut(s) 550, 831
BsmBI CGTCTC 1 cut(s) 550
BsmFI GGGAC 4 cut(s) 89, 239, 427, 440
BsnI GGCC 1 cut(s) 1049
Bso31I GGTCTC 1 cut(s) 831
Bsp119I TTCGAA 1 cut(s) 1133
Bsp1286I GDGCHC 3 cut(s) 501, 604, 764
Bsp143I GATC 6 cut(s) 226, 375, 385, 548, 704, 721
BspACI CCGC 4 cut(s) 190, 263, 280, 1249
BspANI GGCC 1 cut(s) 1049
BspCNI CTCAG 3 cut(s) 513, 834, 987
BspLI GGNNCC 8 cut(s) 254, 255, 302, 537, 774, 914, 1071, 1247
BspPI GGATC 2 cut(s) 556, 716
BspT104I TTCGAA 1 cut(s) 1133
BspT107I GGYRCC 2 cut(s) 300, 772
BspTNI GGTCTC 1 cut(s) 831
BsrBI CCGCTC 1 cut(s) 263
BsrDI GCAATG 2 cut(s) 351, 774
BsrFI RCCGGY 1 cut(s) 1238
BsrI ACTGG 1 cut(s) 918
BssAI RCCGGY 1 cut(s) 1238
BssECI CCNNGG 4 cut(s) 106, 107, 1050, 1065
BssMI GATC 6 cut(s) 226, 375, 385, 548, 704, 721
BssNAI GTATAC 1 cut(s) 427
BssSI CACGAG 1 cut(s) 637
BssT1I CCWWGG 1 cut(s) 1050
Bst1107I GTATAC 1 cut(s) 427
Bst2BI CACGAG 1 cut(s) 637
Bst2UI CCWGG 4 cut(s) 108, 213, 580, 1067
Bst4CI ACNGT 5 cut(s) 82, 305, 575, 1022, 1082
Bst6I CTCTTC 1 cut(s) 210
BstBAI YACGTR 1 cut(s) 176
BstBI TTCGAA 1 cut(s) 1133
BstC8I GCNNGC 8 cut(s) 241, 275, 316, 411, 904, 1010, 1189, 1240
BstDEI CTNAG 5 cut(s) 459, 500, 842, 974, 1290
BstENI CCTNNNNNAGG 1 cut(s) 845
BstF5I GGATG 4 cut(s) 143, 151, 967, 1095
BstKTI GATC 6 cut(s) 229, 378, 388, 551, 707, 724
BstMAI GTCTC 2 cut(s) 550, 831
BstMBI GATC 6 cut(s) 226, 375, 385, 548, 704, 721
BstMWI GCNNNNNNNGC 9 cut(s) 124, 274, 279, 288, 963, 1055, 1154, 1239, 1248
BstNI CCWGG 4 cut(s) 108, 213, 580, 1067
BstNSI RCATGY 2 cut(s) 51, 413
BstPAI GACNNNNGTC 1 cut(s) 1211
BstSCI CCNGG 4 cut(s) 106, 211, 578, 1065
BstSLI GKGCMC 1 cut(s) 604
BstV1I GCAGC 2 cut(s) 953, 1070
BstV2I GAAGAC 1 cut(s) 299
BstZ17I GTATAC 1 cut(s) 427
Bsu36I CCTNAGG 1 cut(s) 459
BsuRI GGCC 1 cut(s) 1049
BtgZI GCGATG 1 cut(s) 254
BtsCI GGATG 4 cut(s) 143, 151, 967, 1095
BtsI GCAGTG 2 cut(s) 762, 1270
BtsIMutI CAGTG 5 cut(s) 508, 580, 762, 925, 1270
Cac8I GCNNGC 8 cut(s) 241, 275, 316, 411, 904, 1010, 1189, 1240
CaiI CAGNNNCTG 1 cut(s) 507
Cfr10I RCCGGY 1 cut(s) 1238
Cfr13I GGNCC 6 cut(s) 253, 535, 582, 696, 741, 1047
Csp6I GTAC 2 cut(s) 301, 877
CviAII CATG 2 cut(s) 48, 410
CviQI GTAC 2 cut(s) 301, 877
DdeI CTNAG 5 cut(s) 459, 500, 842, 974, 1290
DpnI GATC 6 cut(s) 228, 377, 387, 550, 706, 723
DpnII GATC 6 cut(s) 226, 375, 385, 548, 704, 721
DraI TTTAAA 1 cut(s) 930
DraIII CACNNNGTG 1 cut(s) 179
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
EciI GGCGGA 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 1050
Eco31I GGTCTC 1 cut(s) 831
Eco47I GGWCC 5 cut(s) 253, 535, 582, 696, 741
Eco57I CTGAAG 2 cut(s) 378, 492
Eco72I CACGTG 1 cut(s) 176
Eco81I CCTNAGG 1 cut(s) 459
EcoNI CCTNNNNNAGG 1 cut(s) 845
EcoO109I RGGNCCY 4 cut(s) 253, 535, 696, 1047
EcoRII CCWGG 4 cut(s) 106, 211, 578, 1065
EcoT14I CCWWGG 1 cut(s) 1050
ErhI CCWWGG 1 cut(s) 1050
Esp3I CGTCTC 1 cut(s) 550
FaeI CATG 2 cut(s) 51, 413
FaqI GGGAC 4 cut(s) 89, 239, 427, 440
FatI CATG 2 cut(s) 47, 409
FbaI TGATCA 1 cut(s) 375
FblI GTMKAC 2 cut(s) 426, 792
Fnu4HI GCNGC 3 cut(s) 190, 967, 1059
FokI GGATG 4 cut(s) 130, 138, 974, 1082
Fsp4HI GCNGC 3 cut(s) 190, 967, 1059
FspBI CTAG 4 cut(s) 159, 284, 1044, 1184
GluI GCNGC 3 cut(s) 190, 967, 1059
GsuI CTGGAG 2 cut(s) 108, 928
HaeIII GGCC 1 cut(s) 1049
HapII CCGG 1 cut(s) 1239
Hin1II CATG 2 cut(s) 51, 413
HindIII AAGCTT 2 cut(s) 116, 1287
HinfI GANTC 4 cut(s) 216, 561, 998, 1279
HpaII CCGG 1 cut(s) 1239
HphI GGTGA 2 cut(s) 191, 503
Hpy166II GTNNAC 5 cut(s) 427, 793, 982, 1085, 1270
Hpy188I TCNGA 4 cut(s) 472, 754, 977, 1100
Hpy188III TCNNGA 3 cut(s) 389, 841, 1204
Hpy8I GTNNAC 5 cut(s) 427, 793, 982, 1085, 1270
HpyAV CCTTC 3 cut(s) 455, 754, 791
HpyCH4III ACNGT 5 cut(s) 82, 305, 575, 1022, 1082
HpyCH4IV ACGT 1 cut(s) 175
HpyCH4V TGCA 9 cut(s) 57, 127, 291, 691, 767, 902, 957, 969, 1092
HpyF10VI GCNNNNNNNGC 9 cut(s) 124, 274, 279, 288, 963, 1055, 1154, 1239, 1248
HpyF3I CTNAG 5 cut(s) 459, 500, 842, 974, 1290
HpySE526I ACGT 1 cut(s) 175
Hsp92II CATG 2 cut(s) 51, 413
KflI GGGWCCC 1 cut(s) 253
KpnI GGTACC 1 cut(s) 304
KroI GCCGGC 1 cut(s) 1238
KroNI GCCGGC 1 cut(s) 1240
Ksp22I TGATCA 1 cut(s) 375
Kzo9I GATC 6 cut(s) 226, 375, 385, 548, 704, 721
LmnI GCTCC 5 cut(s) 89, 265, 282, 1005, 1154
Lsp1109I GCAGC 2 cut(s) 953, 1070
LweI GCATC 7 cut(s) 55, 152, 277, 604, 946, 1101, 1135
MaeI CTAG 4 cut(s) 159, 284, 1044, 1184
MaeII ACGT 1 cut(s) 175
MaeIII GTNAC 4 cut(s) 509, 1037, 1213, 1259
MalI GATC 6 cut(s) 228, 377, 387, 550, 706, 723
MbiI CCGCTC 1 cut(s) 263
MboI GATC 6 cut(s) 226, 375, 385, 548, 704, 721
MboII GAAGA 7 cut(s) 21, 24, 197, 200, 299, 371, 1274
MhlI GDGCHC 3 cut(s) 501, 604, 764
MluCI AATT 1 cut(s) 246
MlyI GAGTC 2 cut(s) 210, 570
MmeI TCCRAC 1 cut(s) 179
MroNI GCCGGC 1 cut(s) 1238
MseI TTAA 5 cut(s) 75, 138, 812, 929, 1077
MslI CAYNNNNRTG 3 cut(s) 52, 767, 942
MspA1I CMGCKG 1 cut(s) 873
MspI CCGG 1 cut(s) 1239
MspR9I CCNGG 4 cut(s) 108, 213, 580, 1067
MvaI CCWGG 4 cut(s) 108, 213, 580, 1067
MwoI GCNNNNNNNGC 9 cut(s) 124, 274, 279, 288, 963, 1055, 1154, 1239, 1248
NaeI GCCGGC 1 cut(s) 1240
NdeII GATC 6 cut(s) 226, 375, 385, 548, 704, 721
NgoMIV GCCGGC 1 cut(s) 1238
NlaIII CATG 2 cut(s) 51, 413
NlaIV GGNNCC 8 cut(s) 254, 255, 302, 537, 774, 914, 1071, 1247
NmuCI GTSAC 3 cut(s) 509, 1213, 1259
NspI RCATGY 2 cut(s) 51, 413
NspV TTCGAA 1 cut(s) 1133
PaeI GCATGC 1 cut(s) 413
PasI CCCWGGG 1 cut(s) 107
PdiI GCCGGC 1 cut(s) 1240
PfeI GAWTC 2 cut(s) 998, 1279
PflMI CCANNNNNTGG 1 cut(s) 591
PfoI TCCNGGA 1 cut(s) 211
PkrI GCNGC 3 cut(s) 191, 968, 1060
PleI GAGTC 2 cut(s) 210, 569
PmaCI CACGTG 1 cut(s) 176
PmlI CACGTG 1 cut(s) 176
PpsI GAGTC 2 cut(s) 210, 569
Ppu21I YACGTR 1 cut(s) 176
PpuMI RGGWCCY 3 cut(s) 253, 535, 696
PshAI GACNNNNGTC 1 cut(s) 1211
PsiI TTATAA 1 cut(s) 647
Psp5II RGGWCCY 3 cut(s) 253, 535, 696
Psp6I CCWGG 4 cut(s) 106, 211, 578, 1065
PspCI CACGTG 1 cut(s) 176
PspGI CCWGG 4 cut(s) 106, 211, 578, 1065
PspN4I GGNNCC 8 cut(s) 254, 255, 302, 537, 774, 914, 1071, 1247
PspPI GGNCC 6 cut(s) 253, 535, 582, 696, 741, 1047
PspPPI RGGWCCY 3 cut(s) 253, 535, 696
PstNI CAGNNNCTG 1 cut(s) 507
PvuII CAGCTG 1 cut(s) 873
RsaI GTAC 2 cut(s) 302, 878
RsaNI GTAC 2 cut(s) 301, 877
RseI CAYNNNNRTG 3 cut(s) 52, 767, 942
SaqAI TTAA 5 cut(s) 75, 138, 812, 929, 1077
SatI GCNGC 3 cut(s) 190, 967, 1059
Sau3AI GATC 6 cut(s) 226, 375, 385, 548, 704, 721
Sau96I GGNCC 6 cut(s) 253, 535, 582, 696, 741, 1047
SchI GAGTC 2 cut(s) 210, 570
ScrFI CCNGG 4 cut(s) 108, 213, 580, 1067
SduI GDGCHC 3 cut(s) 501, 604, 764
SfaNI GCATC 7 cut(s) 55, 152, 277, 604, 946, 1101, 1135
SfuI TTCGAA 1 cut(s) 1133
SinI GGWCC 5 cut(s) 253, 535, 582, 696, 741
SmiMI CAYNNNNRTG 3 cut(s) 52, 767, 942
SmlI CTYRAG 1 cut(s) 700
SmoI CTYRAG 1 cut(s) 700
SphI GCATGC 1 cut(s) 413
Sse9I AATT 1 cut(s) 246
SsiI CCGC 4 cut(s) 190, 263, 280, 1249
SspI AATATT 1 cut(s) 467
SspMI CTAG 4 cut(s) 159, 284, 1044, 1184
StyD4I CCNGG 4 cut(s) 106, 211, 578, 1065
StyI CCWWGG 1 cut(s) 1050
TaaI ACNGT 5 cut(s) 82, 305, 575, 1022, 1082
TaiI ACGT 1 cut(s) 178
TaqI TCGA 4 cut(s) 388, 832, 1017, 1133
TasI AATT 1 cut(s) 246
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 2 cut(s) 998, 1279
Tru1I TTAA 5 cut(s) 75, 138, 812, 929, 1077
Tru9I TTAA 5 cut(s) 75, 138, 812, 929, 1077
TscAI CASTG 5 cut(s) 508, 580, 769, 925, 1277
TseFI GTSAC 3 cut(s) 509, 1213, 1259
TseI GCWGC 2 cut(s) 966, 1058
Tsp45I GTSAC 3 cut(s) 509, 1213, 1259
TspDTI ATGAA 4 cut(s) 140, 736, 769, 1002
TspGWI ACGGA 2 cut(s) 326, 906
TspRI CASTG 5 cut(s) 508, 580, 769, 925, 1277
Van91I CCANNNNNTGG 1 cut(s) 591
VpaK11BI GGWCC 5 cut(s) 253, 535, 582, 696, 741
XagI CCTNNNNNAGG 1 cut(s) 845
XceI RCATGY 2 cut(s) 51, 413
XmiI GTMKAC 2 cut(s) 426, 792
XspI CTAG 4 cut(s) 159, 284, 1044, 1184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.