Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002477

Physical Location & Seq

Genomic Coordinates Forward (+)

617271 .. 617720

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGAGTGAAGCCTATGCTCCTGAAGCCAATACCTGGACCCCTATTAGTGACGGGATGGTTGATGGGTGGCGCAACCCAAGTATTTCTTTAAATGGGCAGCTCTATGCTTTGGACTGCCATGATGGGTGCAAGCTTAGGGTTTATGATAGAGTATCAGATTCATGGAACAAATTTATAGATAGCAAGGTTCATCTAGGGAGTTCTTGTGCTTTGGAGGCTGCTGCGCTTGTTCCCCTTAACGGGAAGCTTTGCATTATTCGTAATAACATGAGCATCAGTTTAGTTGATGTTTCAAGTCCGGATAAACATGTAGAAAGCAACCCTCACCTTTGGGAAAATATCGCCGGCAAAGGTCATTTTAGAACTCTAGTCTCAAATATATGGTCTAGTATAGCAGGCCGAACTGGTTTGAAGAGTCACATTGTACACTGTCAAGTGCTCCAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0031461 GO:0031463 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

150

Amino Acids

16.36

Weight (kDa)

6.63

Isoelectric Point (pI)

44.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002477)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55270 AT1G55270
fragaria_vesca	FvH4_1g03541 FvH4_1g03541 FvH4_3g45191 FvH4_3g45191
malus_domestica	MD02G1034600.v1.1 MD03G1007500.v1.1 MD15G1175400.v1.1
prunus_persica	Prupe.6G009200_v2.0.a1 Prupe.6G009200_v2.0.a1 Prupe.7G240700_v2.0.a1 Prupe.7G240700_v2.0.a1
pyrus_communis	pycom03g00770 pycom03g00780 pycom11g00680 pycom15g15680
rosa_chinensis	RchiOBHm_Chr2g0088991 RchiOBHm_Chr2g0089041 RchiOBHm_Chr5g0082421 RchiOBHm_Chr5g0082431 RchiOBHm_Chr5g0082801
rosa_laevigata	RLG00000015985 RLG00000036990
rosa_multiflora	Rmu_co8150054.1_g000001
rosa_roxburghii	Rroxscaffold_1G00001640 Rroxscaffold_2G00152320
rosa_rugosa	Rorug01G0486800 Rorug01G0486900 Rorug05G0478000 Rorug05G0479700
rosa_samantha	Rh2AG042300 Rh2BG040800 Rh2CG042400 Rh2DG041300 Rh5AG529500 Rh5AG530200 Rh5BG557100 Rh5CG579900
rosa_wichuraiana	Rw2G003520 Rw5G049580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	33
AccIII	TCCGGA	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	1 cut(s)	426
AfiI	CCNNNNNNNGG	3 cut(s)	33, 239, 240
AflIII	ACRYGT	1 cut(s)	307
AgsI	TTSAA	2 cut(s)	294, 412
AjnI	CCWGG	1 cut(s)	32
AluBI	AGCT	3 cut(s)	100, 133, 247
AluI	AGCT	3 cut(s)	100, 133, 247
Alw21I	GWGCWC	1 cut(s)	441
Alw26I	GTCTC	1 cut(s)	376
Aor13HI	TCCGGA	1 cut(s)	298
AoxI	GGCC	1 cut(s)	397
ApeKI	GCWGC	3 cut(s)	97, 218, 221
ApoI	RAATTY	1 cut(s)	170
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
AspLEI	GCGC	2 cut(s)	72, 226
AspS9I	GGNCC	1 cut(s)	36
AsuHPI	GGTGA	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	441
BbvI	GCAGC	3 cut(s)	109, 205, 208
BccI	CCATC	3 cut(s)	49, 56, 116
BciT130I	CCWGG	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	376
BfaI	CTAG	3 cut(s)	194, 368, 387
BisI	GCNGC	3 cut(s)	98, 219, 222
BlsI	GCNGC	3 cut(s)	99, 220, 223
Bme1390I	CCNGG	1 cut(s)	34
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	1 cut(s)	34
BmsI	GCATC	1 cut(s)	282
Bpu10I	CCTNAGC	1 cut(s)	134
BsaWI	WCCGGW	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	190, 220
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 239, 240
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	409
BseAI	TCCGGA	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	34
BseGI	GGATG	1 cut(s)	60
BseLI	CCNNNNNNNGG	3 cut(s)	33, 239, 240
BseNI	ACTGG	1 cut(s)	409
BseXI	GCAGC	3 cut(s)	109, 205, 208
BshFI	GGCC	1 cut(s)	399
BsiHKAI	GWGCWC	1 cut(s)	441
BsiSI	CCGG	2 cut(s)	299, 345
BslI	CCNNNNNNNGG	3 cut(s)	33, 239, 240
BsmAI	GTCTC	1 cut(s)	376
BsnI	GGCC	1 cut(s)	399
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp13I	TCCGGA	1 cut(s)	298
Bsp1407I	TGTACA	1 cut(s)	424
BspANI	GGCC	1 cut(s)	399
BspEI	TCCGGA	1 cut(s)	298
BspLI	GGNNCC	1 cut(s)	38
BsrFI	RCCGGY	1 cut(s)	344
BsrGI	TGTACA	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	409
BssAI	RCCGGY	1 cut(s)	344
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	431
Bst6I	CTCTTC	1 cut(s)	407
BstAUI	TGTACA	1 cut(s)	424
BstC8I	GCNNGC	3 cut(s)	131, 346, 397
BstDEI	CTNAG	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	60
BstHHI	GCGC	2 cut(s)	72, 226
BstMAI	GTCTC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 215
BstNI	CCWGG	1 cut(s)	34
BstNSI	RCATGY	1 cut(s)	311
BstSCI	CCNGG	1 cut(s)	32
BstV1I	GCAGC	3 cut(s)	109, 205, 208
BsuRI	GGCC	1 cut(s)	399
BtsCI	GGATG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	427
Cac8I	GCNNGC	3 cut(s)	131, 346, 397
CfoI	GCGC	2 cut(s)	72, 226
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	425
CviAII	CATG	5 cut(s)	119, 162, 268, 308, 447
CviJI	RGCY	7 cut(s)	11, 26, 100, 133, 218, 247, 399
CviKI_1	RGCY	7 cut(s)	11, 26, 100, 133, 218, 247, 399
CviQI	GTAC	1 cut(s)	425
DdeI	CTNAG	1 cut(s)	134
DraI	TTTAAA	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
Eco47I	GGWCC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	32
FaeI	CATG	5 cut(s)	122, 165, 271, 311, 450
FalI	AAGNNNNNCTT	2 cut(s)	70, 102
FatI	CATG	5 cut(s)	118, 161, 267, 307, 446
Fnu4HI	GCNGC	3 cut(s)	98, 219, 222
FokI	GGATG	1 cut(s)	67
Fsp4HI	GCNGC	3 cut(s)	98, 219, 222
FspBI	CTAG	3 cut(s)	194, 368, 387
GlaI	GCGC	2 cut(s)	71, 225
GluI	GCNGC	3 cut(s)	98, 219, 222
HaeIII	GGCC	1 cut(s)	399
HapII	CCGG	2 cut(s)	299, 345
HhaI	GCGC	2 cut(s)	72, 226
Hin1II	CATG	5 cut(s)	122, 165, 271, 311, 450
Hin6I	GCGC	2 cut(s)	70, 224
HinP1I	GCGC	2 cut(s)	70, 224
HindIII	AAGCTT	2 cut(s)	131, 245
HinfI	GANTC	2 cut(s)	158, 415
HpaII	CCGG	2 cut(s)	299, 345
HphI	GGTGA	1 cut(s)	317
Hpy166II	GTNNAC	1 cut(s)	427
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	2 cut(s)	20, 299
Hpy8I	GTNNAC	1 cut(s)	427
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4V	TGCA	2 cut(s)	129, 252
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 215
HpyF3I	CTNAG	1 cut(s)	134
Hsp92II	CATG	5 cut(s)	122, 165, 271, 311, 450
HspAI	GCGC	2 cut(s)	70, 224
Kpn2I	TCCGGA	1 cut(s)	298
KroI	GCCGGC	1 cut(s)	344
KroNI	GCCGGC	1 cut(s)	346
LmnI	GCTCC	2 cut(s)	22, 444
LpnPI	CCDG	7 cut(s)	19, 33, 46, 312, 358, 381, 390
Lsp1109I	GCAGC	3 cut(s)	109, 205, 208
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	3 cut(s)	194, 368, 387
MaeIII	GTNAC	2 cut(s)	47, 416
MboII	GAAGA	1 cut(s)	424
MhlI	GDGCHC	1 cut(s)	441
MluCI	AATT	1 cut(s)	170
MlyI	GAGTC	1 cut(s)	424
MnlI	CCTC	2 cut(s)	208, 333
MroI	TCCGGA	1 cut(s)	298
MroNI	GCCGGC	1 cut(s)	344
MseI	TTAA	2 cut(s)	89, 237
MspI	CCGG	2 cut(s)	299, 345
MspR9I	CCNGG	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	34
MwoI	GCNNNNNNNGC	2 cut(s)	23, 215
NaeI	GCCGGC	1 cut(s)	346
NgoMIV	GCCGGC	1 cut(s)	344
NlaIII	CATG	5 cut(s)	122, 165, 271, 311, 450
NlaIV	GGNNCC	1 cut(s)	38
NmuCI	GTSAC	2 cut(s)	47, 416
NspI	RCATGY	1 cut(s)	311
PciI	ACATGT	1 cut(s)	307
PdiI	GCCGGC	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	158
PflMI	CCANNNNNTGG	1 cut(s)	33
PkrI	GCNGC	3 cut(s)	99, 220, 223
PleI	GAGTC	1 cut(s)	423
PpsI	GAGTC	1 cut(s)	423
PscI	ACATGT	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	32
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	1 cut(s)	36
RsaI	GTAC	1 cut(s)	426
RsaNI	GTAC	1 cut(s)	425
SaqAI	TTAA	2 cut(s)	89, 237
SatI	GCNGC	3 cut(s)	98, 219, 222
Sau96I	GGNCC	1 cut(s)	36
SchI	GAGTC	1 cut(s)	424
ScrFI	CCNGG	1 cut(s)	34
SduI	GDGCHC	1 cut(s)	441
SetI	ASST	7 cut(s)	35, 102, 135, 189, 249, 330, 355
SfaNI	GCATC	1 cut(s)	282
SinI	GGWCC	1 cut(s)	36
Sse9I	AATT	1 cut(s)	170
SspMI	CTAG	3 cut(s)	194, 368, 387
StyD4I	CCNGG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	431
TasI	AATT	1 cut(s)	170
TatI	WGTACW	1 cut(s)	424
TfiI	GAWTC	1 cut(s)	158
Tru1I	TTAA	2 cut(s)	89, 237
Tru9I	TTAA	2 cut(s)	89, 237
TscAI	CASTG	1 cut(s)	434
TseFI	GTSAC	2 cut(s)	47, 416
TseI	GCWGC	3 cut(s)	97, 218, 221
Tsp45I	GTSAC	2 cut(s)	47, 416
TspDTI	ATGAA	2 cut(s)	150, 179
TspRI	CASTG	1 cut(s)	434
Van91I	CCANNNNNTGG	1 cut(s)	33
VpaK11BI	GGWCC	1 cut(s)	36
XapI	RAATTY	1 cut(s)	170
XceI	RCATGY	1 cut(s)	311
XspI	CTAG	3 cut(s)	194, 368, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.