AT1G55500

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001378
Physical Location & Seq
Forward (+)
20719473 .. 20722856
3384 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G55500.3

Sequence Viewer

Length: 1650 bp
ATGGATTCGAATGGTCAAGTTCCTTCTTTTGATCGATCTTTGTCACCTATGCTACCCAGTGATGCCTTGGATCCTTCTGTTTTCTATGTTCCTAATGTGTATCAGCAGCCCTACTATTATGGTTATGGGAGTGACTACACAGGTTATACCAATTCCGAGAGTGTTGATATGACATCAGGATACGGGTATGCTGCCTTTCCTTACTCACCAGCAACAAGCCCTGCTCCACAACTTGGTGGTGATGGACAGTTGTATGGTGCTCAGCAGTACCAGTATCCTTTTCCTCTCACAGCCAGTAGTGGGCCTTTCGCTTCGTCTGTTCCTGCCTCTACTCAGAGCAAGCTCTCTACAAACAAAGCAGCCAACTCTGCATCTGCTGGTATCCCTAAAGGAATGAATGGATCAGCTCCTGTTAAACCATTGAATCAGAGTGCACTGTATGGAAACAGTGCTCTTGGAGGTGGTCTTGCTGCTGGTTATCAGGACCCCAGGTATAGCTATGATGGGTTTTACACTCCTGTGTCATGGCACGATGGCTCTAACTTCTCAGATGTGCAGAGGTCTGTTTCTGGCAGTGGAGTTGCATCCTCATATTCTAAGGCTAACAACAATGTACCTGCGACTAGGAATCAAAACTCTAGCTCCAATTCGCATTACACGAGTATGTACCAGCCTGCATCCATGACAGGTTATGCAGCTCAGGGTTACTACGACAGAGTGTCTCCAAACAAGTCATATGGTCAGTATGGTAGCACGGTGAGGTCTGGTATGGGTTATGGTTCTTCTGGATATGGTTCAAGAACAAATGAAAGAGGATGGCTCAATACAGACAACAAATATAGAAGCCGGGGAAGGGGTAACAGTTACTTCTATGGAAATGAGAACATTGATGGCTTGAATGAACTAAACAGGGGCCCTAGAGCCAAGGGCACGAAGGCCACAGAAGAGGTTAGCTCAGAGGAGGTGAAAAAGCAGACGTTTGATGAATCAAATACTGAGGAGACTGTAACATGCGTTCTTCCAGATAGAGAAGAGTGCAACAGAGACGATTTTCCAGTTGAGTATAAAGATGCTAAGTTCTTTATCATCAAGTCGTACAGTGAAGATGATGTGCATAAGAGCATCAAATATAATGTATGGGCTAGCACCCCAAATGGAAACAAGAAGCTTGATGCTGCATATCAAGAGGCTCAGCAGAAATCTAGTGGCTGCCCTGTGTTTCTCTTCTTCTCGGTCAACGCGAGTGGACAATTTATTGGCCTTGCGGAAATGAAAGGACCAGTTGATTTCAACAAAAATATTGAGTACTGGCAACAGGATAAATGGACTGGCTCATTTCCCCTCAAGTGGCATATTCTGAAGGATGTTCCCAACAGTTTGCTTAAGCATATTACTCTAGAGTACAATGAGAATAAACCTGTTACTAACAGTAGAGACACACAAGAGGTTAAGTTGGAGCAGGGTTTGAAGGTTGTAAAGATTTTCAAGGAGCATAACAGCAAGACATGCATTTTGGATGATTTCTCGTTCTACGAGGCTCGACAAAAGACTATTTTGGAGAAGAAAGCTAAGCAGCAACAATCCCAGAAGCAGGTCTGGGAAGGAAAAACCAATGATGAGAAACCAGGAACTGTTGATTCTACCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

549

Amino Acids

60.65

Weight (kDa)

6.37

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 401 - 539 6.7e-49 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 625, 1582
AccB7I CCANNNNNTGG 1 cut(s) 233
AccII CGCG 1 cut(s) 1241
AciI CCGC 1 cut(s) 1265
AclWI GGATC 3 cut(s) 65, 78, 409
AcuI CTGAAG 1 cut(s) 1379
AfaI GTAC 6 cut(s) 269, 615, 668, 1097, 1307, 1403
AfiI CCNNNNNNNGG 5 cut(s) 233, 300, 853, 1347, 1591
AflII CTTAAG 1 cut(s) 1382
AgsI TTSAA 6 cut(s) 424, 798, 898, 1291, 1468, 1486
AhdI GACNNNNNGTC 1 cut(s) 718
AjnI CCWGG 2 cut(s) 488, 1624
AleI CACNNNNGTG 1 cut(s) 518
AluBI AGCT 8 cut(s) 343, 407, 498, 642, 698, 954, 1168, 1568
AluI AGCT 8 cut(s) 343, 407, 498, 642, 698, 954, 1168, 1568
Alw21I GWGCWC 3 cut(s) 262, 436, 454
Alw26I GTCTC 4 cut(s) 726, 995, 1038, 1428
Alw44I GTGCAC 1 cut(s) 432
AlwI GGATC 3 cut(s) 65, 78, 409
AlwNI CAGNNNCTG 2 cut(s) 410, 1631
AoxI GGCC 4 cut(s) 302, 913, 936, 1258
ApaI GGGCCC 1 cut(s) 917
ApaLI GTGCAC 1 cut(s) 432
ApeKI GCWGC 8 cut(s) 106, 191, 359, 470, 695, 1175, 1209, 1573
ArsI GACNNNNNNTTYG 2 cut(s) 1495, 1527
AspS9I GGNCC 5 cut(s) 302, 484, 913, 914, 1277
AsuC2I CCSGG 1 cut(s) 848
AsuHPI GGTGA 5 cut(s) 36, 198, 251, 769, 976
AsuII TTCGAA 1 cut(s) 8
AsuNHI GCTAGC 1 cut(s) 1142
AvaII GGWCC 2 cut(s) 484, 1277
BaeGI GKGCMC 3 cut(s) 436, 917, 932
BamHI GGATCC 1 cut(s) 70
BanII GRGCYC 1 cut(s) 917
BauI CACGAG 1 cut(s) 658
Bbv12I GWGCWC 3 cut(s) 262, 436, 454
BbvI GCAGC 8 cut(s) 118, 178, 371, 457, 707, 1162, 1196, 1585
BccI CCATC 5 cut(s) 236, 497, 527, 810, 884
BciT130I CCWGG 2 cut(s) 490, 1626
BciVI GTATCC 3 cut(s) 173, 285, 392
BcnI CCSGG 1 cut(s) 848
BcoDI GTCTC 4 cut(s) 726, 995, 1038, 1428
BfaI CTAG 6 cut(s) 624, 639, 918, 1143, 1203, 1397
BfrI CTTAAG 1 cut(s) 1382
BfuAI ACCTGC 2 cut(s) 625, 1582
BfuI GTATCC 3 cut(s) 173, 285, 392
BisI GCNGC 8 cut(s) 107, 192, 360, 471, 696, 1176, 1210, 1574
BlpI GCTNAGC 3 cut(s) 261, 1191, 1569
BlsI GCNGC 8 cut(s) 108, 193, 361, 472, 697, 1177, 1211, 1575
BmcAI AGTACT 1 cut(s) 1307
Bme1390I CCNGG 3 cut(s) 490, 848, 1626
Bme18I GGWCC 2 cut(s) 484, 1277
BmeRI GACNNNNNGTC 1 cut(s) 718
BmgT120I GGNCC 5 cut(s) 302, 484, 913, 914, 1277
BmiI GGNNCC 4 cut(s) 72, 486, 914, 915
BmrFI CCNGG 3 cut(s) 490, 848, 1626
BmrI ACTGGG 1 cut(s) 51
BmsI GCATC 7 cut(s) 52, 380, 593, 686, 1060, 1131, 1162
BmtI GCTAGC 1 cut(s) 1146
BmuI ACTGGG 1 cut(s) 51
BplI GAGNNNNNCTC 4 cut(s) 804, 836, 938, 970
Bpu10I CCTNAGC 1 cut(s) 699
Bpu1102I GCTNAGC 3 cut(s) 261, 1191, 1569
Bpu14I TTCGAA 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 1328
BpuMI CCSGG 1 cut(s) 848
Bsa29I ATCGAT 1 cut(s) 34
BsaJI CCNNGG 4 cut(s) 66, 488, 847, 924
BsaXI ACNNNNNCTCC 2 cut(s) 626, 656
Bsc4I CCNNNNNNNGG 5 cut(s) 233, 300, 853, 1347, 1591
Bse1I ACTGG 7 cut(s) 57, 271, 294, 1055, 1280, 1313, 1333
BseBI CCWGG 2 cut(s) 490, 1626
BseCI ATCGAT 1 cut(s) 34
BseDI CCNNGG 4 cut(s) 66, 488, 847, 924
BseGI GGATG 5 cut(s) 584, 677, 821, 1369, 1522
BseLI CCNNNNNNNGG 5 cut(s) 233, 300, 853, 1347, 1591
BseMII CTCAG 7 cut(s) 275, 347, 561, 713, 969, 987, 1205
BseNI ACTGG 7 cut(s) 57, 271, 294, 1055, 1280, 1313, 1333
BseRI GAGGAG 2 cut(s) 974, 1013
BseSI GKGCMC 3 cut(s) 436, 917, 932
BseXI GCAGC 8 cut(s) 118, 178, 371, 457, 707, 1162, 1196, 1585
BsgI GTGCAG 1 cut(s) 575
Bsh1236I CGCG 1 cut(s) 1241
BshFI GGCC 4 cut(s) 304, 915, 938, 1260
BshVI ATCGAT 1 cut(s) 34
BsiHKAI GWGCWC 3 cut(s) 262, 436, 454
BsiSI CCGG 1 cut(s) 847
BslI CCNNNNNNNGG 5 cut(s) 233, 300, 853, 1347, 1591
BsmAI GTCTC 4 cut(s) 726, 995, 1038, 1428
BsmBI CGTCTC 1 cut(s) 1038
BsnI GGCC 4 cut(s) 304, 915, 938, 1260
Bsp119I TTCGAA 1 cut(s) 8
Bsp120I GGGCCC 1 cut(s) 913
Bsp1286I GDGCHC 5 cut(s) 262, 436, 454, 917, 932
Bsp143I GATC 4 cut(s) 31, 35, 70, 401
Bsp1720I GCTNAGC 3 cut(s) 261, 1191, 1569
BspACI CCGC 1 cut(s) 1265
BspANI GGCC 4 cut(s) 304, 915, 938, 1260
BspCNI CTCAG 7 cut(s) 274, 346, 560, 712, 968, 988, 1204
BspDI ATCGAT 1 cut(s) 34
BspFNI CGCG 1 cut(s) 1241
BspLI GGNNCC 4 cut(s) 72, 486, 914, 915
BspMI ACCTGC 2 cut(s) 625, 1582
BspOI GCTAGC 1 cut(s) 1146
BspPI GGATC 3 cut(s) 65, 78, 409
BspT104I TTCGAA 1 cut(s) 8
BspTI CTTAAG 1 cut(s) 1382
BsrI ACTGG 7 cut(s) 57, 271, 294, 1055, 1280, 1313, 1333
BssECI CCNNGG 4 cut(s) 66, 488, 847, 924
BssMI GATC 4 cut(s) 31, 35, 70, 401
BssSI CACGAG 1 cut(s) 658
BssT1I CCWWGG 2 cut(s) 66, 924
Bst2BI CACGAG 1 cut(s) 658
Bst2UI CCWGG 2 cut(s) 490, 1626
Bst6I CTCTTC 3 cut(s) 939, 1026, 1229
BstAFI CTTAAG 1 cut(s) 1382
BstAPI GCANNNNNTGC 1 cut(s) 1506
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 3 cut(s) 341, 675, 1144
BstF5I GGATG 5 cut(s) 584, 677, 821, 1369, 1522
BstFNI CGCG 1 cut(s) 1241
BstKTI GATC 4 cut(s) 34, 38, 73, 404
BstMAI GTCTC 4 cut(s) 726, 995, 1038, 1428
BstMBI GATC 4 cut(s) 31, 35, 70, 401
BstMWI GCNNNNNNNGC 2 cut(s) 368, 1506
BstNI CCWGG 2 cut(s) 490, 1626
BstNSI RCATGY 2 cut(s) 1014, 1509
BstSCI CCNGG 3 cut(s) 488, 846, 1624
BstSLI GKGCMC 3 cut(s) 436, 917, 932
BstUI CGCG 1 cut(s) 1241
BstV1I GCAGC 8 cut(s) 118, 178, 371, 457, 707, 1162, 1196, 1585
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
Bsu15I ATCGAT 1 cut(s) 34
BsuI GTATCC 3 cut(s) 173, 285, 392
BsuRI GGCC 4 cut(s) 304, 915, 938, 1260
BsuTUI ATCGAT 1 cut(s) 34
BtsCI GGATG 5 cut(s) 584, 677, 821, 1369, 1522
BtsI GCAGTG 1 cut(s) 580
BtsIMutI CAGTG 5 cut(s) 64, 434, 454, 580, 1105
BveI ACCTGC 2 cut(s) 625, 1582
Cac8I GCNNGC 3 cut(s) 341, 675, 1144
CaiI CAGNNNCTG 2 cut(s) 410, 1631
Cfr13I GGNCC 5 cut(s) 302, 484, 913, 914, 1277
ClaI ATCGAT 1 cut(s) 34
Csp6I GTAC 6 cut(s) 268, 614, 667, 1096, 1306, 1402
CspCI CAANNNNNGTGG 2 cut(s) 1225, 1260
CviAII CATG 5 cut(s) 525, 682, 1011, 1506, 1645
CviQI GTAC 6 cut(s) 268, 614, 667, 1096, 1306, 1402
DpnI GATC 4 cut(s) 33, 37, 72, 403
DpnII GATC 4 cut(s) 31, 35, 70, 401
DriI GACNNNNNGTC 1 cut(s) 718
Eam1104I CTCTTC 3 cut(s) 939, 1026, 1229
Eam1105I GACNNNNNGTC 1 cut(s) 718
EarI CTCTTC 3 cut(s) 939, 1026, 1229
Eco130I CCWWGG 2 cut(s) 66, 924
Eco24I GRGCYC 1 cut(s) 917
Eco47I GGWCC 2 cut(s) 484, 1277
Eco57I CTGAAG 1 cut(s) 1379
EcoO109I RGGNCCY 3 cut(s) 484, 913, 914
EcoRII CCWGG 2 cut(s) 488, 1624
EcoT14I CCWWGG 2 cut(s) 66, 924
EcoT22I ATGCAT 1 cut(s) 1511
EcoT38I GRGCYC 1 cut(s) 917
ErhI CCWWGG 2 cut(s) 66, 924
Esp3I CGTCTC 1 cut(s) 1038
FaeI CATG 5 cut(s) 528, 685, 1014, 1509, 1648
FatI CATG 5 cut(s) 524, 681, 1010, 1505, 1644
FauNDI CATATG 1 cut(s) 736
Fnu4HI GCNGC 8 cut(s) 107, 192, 360, 471, 696, 1176, 1210, 1574
FokI GGATG 5 cut(s) 571, 664, 828, 1376, 1529
FriOI GRGCYC 1 cut(s) 917
Fsp4HI GCNGC 8 cut(s) 107, 192, 360, 471, 696, 1176, 1210, 1574
FspBI CTAG 6 cut(s) 624, 639, 918, 1143, 1203, 1397
GluI GCNGC 8 cut(s) 107, 192, 360, 471, 696, 1176, 1210, 1574
HaeIII GGCC 4 cut(s) 304, 915, 938, 1260
HapII CCGG 1 cut(s) 847
Hin1II CATG 5 cut(s) 528, 685, 1014, 1509, 1648
HincII GTYRAC 1 cut(s) 1237
HindII GTYRAC 1 cut(s) 1237
HindIII AAGCTT 1 cut(s) 1166
HinfI GANTC 5 cut(s) 5, 424, 628, 986, 1637
HpaII CCGG 1 cut(s) 847
HphI GGTGA 5 cut(s) 36, 198, 251, 769, 976
Hpy166II GTNNAC 3 cut(s) 434, 1237, 1247
Hpy188I TCNGA 6 cut(s) 157, 336, 429, 550, 958, 1359
Hpy188III TCNNGA 7 cut(s) 177, 482, 786, 798, 1022, 1184, 1397
Hpy8I GTNNAC 3 cut(s) 434, 1237, 1247
HpyAV CCTTC 7 cut(s) 33, 84, 846, 928, 1354, 1462, 1595
HpyCH4IV ACGT 1 cut(s) 977
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 1506
HpySE526I ACGT 1 cut(s) 977
Hsp92II CATG 5 cut(s) 528, 685, 1014, 1509, 1648
Kzo9I GATC 4 cut(s) 31, 35, 70, 401
LmnI GCTCC 5 cut(s) 229, 412, 647, 1456, 1489
Lsp1109I GCAGC 8 cut(s) 118, 178, 371, 457, 707, 1162, 1196, 1585
LweI GCATC 7 cut(s) 52, 380, 593, 686, 1060, 1131, 1162
MaeI CTAG 6 cut(s) 624, 639, 918, 1143, 1203, 1397
MaeII ACGT 1 cut(s) 977
MaeIII GTNAC 7 cut(s) 42, 131, 704, 857, 863, 1006, 1420
MalI GATC 4 cut(s) 33, 37, 72, 403
MboI GATC 4 cut(s) 31, 35, 70, 401
MboII GAAGA 8 cut(s) 774, 956, 1010, 1043, 1115, 1216, 1219, 1573
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 5 cut(s) 262, 436, 454, 917, 932
MluCI AATT 3 cut(s) 151, 646, 1250
MmeI TCCRAC 1 cut(s) 1434
Mph1103I ATGCAT 1 cut(s) 1511
MseI TTAA 3 cut(s) 414, 1383, 1449
MslI CAYNNNNRTG 2 cut(s) 518, 662
MspCI CTTAAG 1 cut(s) 1382
MspI CCGG 1 cut(s) 847
MspR9I CCNGG 3 cut(s) 490, 848, 1626
MvaI CCWGG 2 cut(s) 490, 1626
MvnI CGCG 1 cut(s) 1241
MwoI GCNNNNNNNGC 2 cut(s) 368, 1506
NciI CCSGG 1 cut(s) 848
NdeI CATATG 1 cut(s) 736
NdeII GATC 4 cut(s) 31, 35, 70, 401
NheI GCTAGC 1 cut(s) 1142
NlaIII CATG 5 cut(s) 528, 685, 1014, 1509, 1648
NlaIV GGNNCC 4 cut(s) 72, 486, 914, 915
NmuCI GTSAC 2 cut(s) 42, 131
NsiI ATGCAT 1 cut(s) 1511
NspI RCATGY 2 cut(s) 1014, 1509
NspV TTCGAA 1 cut(s) 8
OliI CACNNNNGTG 1 cut(s) 518
PcsI WCGNNNNNNNCGW 2 cut(s) 656, 1238
PfeI GAWTC 5 cut(s) 5, 424, 628, 986, 1637
PflMI CCANNNNNTGG 1 cut(s) 233
PkrI GCNGC 8 cut(s) 108, 193, 361, 472, 697, 1177, 1211, 1575
PpuMI RGGWCCY 1 cut(s) 484
Psp5II RGGWCCY 1 cut(s) 484
Psp6I CCWGG 2 cut(s) 488, 1624
PspGI CCWGG 2 cut(s) 488, 1624
PspN4I GGNNCC 4 cut(s) 72, 486, 914, 915
PspOMI GGGCCC 1 cut(s) 913
PspPI GGNCC 5 cut(s) 302, 484, 913, 914, 1277
PspPPI RGGWCCY 1 cut(s) 484
PsrI GAACNNNNNNTAC 2 cut(s) 999, 1031
PstNI CAGNNNCTG 2 cut(s) 410, 1631
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 6 cut(s) 269, 615, 668, 1097, 1307, 1403
RsaNI GTAC 6 cut(s) 268, 614, 667, 1096, 1306, 1402
RseI CAYNNNNRTG 2 cut(s) 518, 662
SaqAI TTAA 3 cut(s) 414, 1383, 1449
SatI GCNGC 8 cut(s) 107, 192, 360, 471, 696, 1176, 1210, 1574
Sau3AI GATC 4 cut(s) 31, 35, 70, 401
Sau96I GGNCC 5 cut(s) 302, 484, 913, 914, 1277
ScaI AGTACT 1 cut(s) 1307
ScrFI CCNGG 3 cut(s) 490, 848, 1626
SduI GDGCHC 5 cut(s) 262, 436, 454, 917, 932
SfaNI GCATC 7 cut(s) 52, 380, 593, 686, 1060, 1131, 1162
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 2 cut(s) 484, 1277
SmiMI CAYNNNNRTG 2 cut(s) 518, 662
SmlI CTYRAG 2 cut(s) 1343, 1382
SmoI CTYRAG 2 cut(s) 1343, 1382
Sse9I AATT 3 cut(s) 151, 646, 1250
SsiI CCGC 1 cut(s) 1265
SspI AATATT 1 cut(s) 1300
SspMI CTAG 6 cut(s) 624, 639, 918, 1143, 1203, 1397
StyD4I CCNGG 3 cut(s) 488, 846, 1624
StyI CCWWGG 2 cut(s) 66, 924
TaiI ACGT 1 cut(s) 980
TaqI TCGA 3 cut(s) 8, 34, 1540
TaqII GACCGA 1 cut(s) 1222
TasI AATT 3 cut(s) 151, 646, 1250
TatI WGTACW 2 cut(s) 1305, 1401
TfiI GAWTC 5 cut(s) 5, 424, 628, 986, 1637
Tru1I TTAA 3 cut(s) 414, 1383, 1449
Tru9I TTAA 3 cut(s) 414, 1383, 1449
TscAI CASTG 5 cut(s) 64, 441, 454, 580, 1105
TseFI GTSAC 2 cut(s) 42, 131
TseI GCWGC 8 cut(s) 106, 191, 359, 470, 695, 1175, 1209, 1573
Tsp45I GTSAC 2 cut(s) 42, 131
TspDTI ATGAA 5 cut(s) 410, 822, 915, 999, 1286
TspRI CASTG 5 cut(s) 64, 441, 454, 580, 1105
Van91I CCANNNNNTGG 1 cut(s) 233
Vha464I CTTAAG 1 cut(s) 1382
VneI GTGCAC 1 cut(s) 432
VpaK11BI GGWCC 2 cut(s) 484, 1277
XbaI TCTAGA 1 cut(s) 1396
XceI RCATGY 2 cut(s) 1014, 1509
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XspI CTAG 6 cut(s) 624, 639, 918, 1143, 1203, 1397
ZrmI AGTACT 1 cut(s) 1307
Zsp2I ATGCAT 1 cut(s) 1511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.