MD03G1002400.v1.1

YTH domain family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0001378
Physical Location & Seq
Reverse (-)
167487 .. 171703
4217 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1002400.v1.1.491

Sequence Viewer

Length: 2031 bp
ATGGCGACCACCGTTTCCCCGCCTGCGGATCAAGCTGCAGACTTGCTGCAGAATTTGGCCTTGGAATCTCAGACCAAGGGACCTGATGATATCCCTGACCCTGCCACTGCCAGGAAGCCCATTGTTGTGACTGCTAAGAGCAAGTCTTATGTTCAGTCTACAGCCCCATTACATAAGGATTTTATGAATCCATCTGCGTGCTATCTCCCTAATGGTTACACACCTTCTGCCTATTACTATGGAGGCTATGGTGGGACTGGAAATGAGTGGGGCGGTATTTCAAGTTATGTTAATCCAAATGGAAGCGATGTGAATTCTGCTGTCTATGGGGATAACGGTTCTTTTATGTATCATCATGGTTATGGTTATGCACCCTACAGCACATATTCGACATCGGGGTCCCCAGTTTCAACTGTTGGAAGTGATGGTCAGCTTTATGGACCTCAGCAGTACCAATATCCTCCGTATTTTAAGCAGCTGAAACCTAACAGTGGTTCACACACCCCTAATTCAGCTGTTCCTTCCCAGGGGACTGTCTCTACAGCGAAGGATGCTGGCCAAAAGCCCTCATTTGTGGGAACGGCTAATGGGAATCCTAATGGTGTTGCGACCAGTGTGGGTAAGAAGGGAAATACTCCTTCCGGTTTCTCAAAACCAACAAATAACAACTCATCACTGAATGTAAAGGGTTCCTTCAGTGGACACTTTGATACAATATATGGTTTTGATGGTTTGCTAACTCCTACCCCATGGTTTGAATGGCCAATGTGTTCAAATGGACTGGGTAAACCAATGACTGGAAATACAGTCAACAGAACTCCATCTTCCAAGAATCAGACTTCCCGATCAAATTCTCAATTCACGGGTTTGCACCACACGAGGATGGGGTACGGTATGGATACAGCTAACGGACTTGTGAATGGAATGTATACCAATGAATTGTATGGTCAGTATTGGGACCCAATTAGACTTGGTATGGGATTTGGAGTCAATGGTTTTGGTATGCATAGAAATAGAAGTGGGTGGACGGCTCTTCAAAACAAGTATAAAACCAGGGGGCGAGGCAGTTCCTTTCGCTTTGGTAACCAGGATTTAGAAGGCTTGGATGAGTTGAACAAGGGACCTAGAGGTAAAAGTTCAAAAAATCAAAAGGGAAATTCACCTGATGCTGTAGCAGTTAAGGGGAGTAACACGCCGCTGAATAAAGCTGATGATGAGAAGGATGCAATTAGCATAGTGGCAGAGCAGGAGCAGTACATTGGAACAGATATCTATGATCATTATGCTGATGCTAAGTTCTTTGTTATTAAGTCATATAGTGAGGATGATGTCCATAAGTGTGTCAAGTATAATGTTTGGGCCAGCACACCAAATGGAAACAATAAGCTTCATGCAGCATACCAGGAGGCTCAGGAGAAATCAGGTGGCTGCCCTGTGTTTCTGTTTTTCTCGGTGAATGCCAGTGGCCAATTTGTTGGCATAGCAGAGATGGTGGGGCTGGTAGATTTTAACAAGAATGTGGAACATTGGCAACAAGACAAGTGGACTGGCTGTTTTCCAGTTAAGTGGCACATTGTAAAGGATGTACCCAACAGTTTGCTAAAGCACATTATCCTAGAGAATAATGAAAACAAACCTGTCGCTAACAGCAGGGACACTCAAGAGGTCAAGCCAGAGCAGGGGCTTAAAATGATCAAGATATTCAAGGATCATTCCAGTAAAACAAGCCTTTTGGATGATTTTGAGTTCTATGAAGCTCGCCAGAAGACAATTCAGGAAAATAAAGCAAAGCAGCAGATCCGGAAACAGGTATTGGATGGGAAGCCAAGTGATAGAAGAAATGATGGGGTAAATGAGGCGCTCAAATCACTAGATTCATTGGGAACTGCCTTAGATTTGATTAAGGAAACGACACCAAGTGCTGAGATTGGTGAAGAACTGAAGTTGTCGGAGAATGGATCAGTTGCTGAAACAGGAGGCAATCCCAAGGGTCCAGAACTAGCTGTGACCAAGATGATTGTAACAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

677

Amino Acids

73.53

Weight (kDa)

7.99

Isoelectric Point (pI)

25.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 431 - 569 9e-48 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 397
AccB7I CCANNNNNTGG 1 cut(s) 797
AccI GTMKAC 2 cut(s) 158, 929
AccIII TCCGGA 1 cut(s) 1800
AciI CCGC 4 cut(s) 20, 26, 273, 1196
AclWI GGATC 4 cut(s) 36, 1716, 1792, 1966
AcoI YGGCCR 3 cut(s) 556, 761, 1465
AcsI RAATTY 4 cut(s) 52, 313, 850, 1156
AcuI CTGAAG 2 cut(s) 679, 1961
AdeI CACNNNGTG 1 cut(s) 1919
AfaI GTAC 4 cut(s) 452, 890, 1256, 1587
AfiI CCNNNNNNNGG 7 cut(s) 25, 111, 491, 527, 797, 1679, 1807
AgsI TTSAA 8 cut(s) 282, 411, 758, 774, 1037, 1114, 1140, 1705
AjnI CCWGG 5 cut(s) 110, 525, 1052, 1086, 1401
AjuI GAANNNNNNNTTGG 4 cut(s) 44, 76, 1796, 1828
AluBI AGCT 9 cut(s) 35, 433, 478, 515, 905, 1208, 1387, 1757, 2003
AluI AGCT 9 cut(s) 35, 433, 478, 515, 905, 1208, 1387, 1757, 2003
Alw26I GTCTC 1 cut(s) 541
AlwI GGATC 4 cut(s) 36, 1716, 1792, 1966
AlwNI CAGNNNCTG 1 cut(s) 1967
Aor13HI TCCGGA 1 cut(s) 1800
AoxI GGCC 5 cut(s) 57, 556, 761, 1359, 1465
ApeKI GCWGC 6 cut(s) 35, 46, 475, 1394, 1428, 1792
ApoI RAATTY 4 cut(s) 52, 313, 850, 1156
AspLEI GCGC 1 cut(s) 1861
AspS9I GGNCC 7 cut(s) 80, 399, 440, 958, 1121, 1359, 1991
AsuHPI GGTGA 3 cut(s) 1152, 1465, 1943
AvaII GGWCC 6 cut(s) 80, 399, 440, 958, 1121, 1991
BalI TGGCCA 3 cut(s) 558, 763, 1467
BauI CACGAG 1 cut(s) 877
BbsI GAAGAC 1 cut(s) 1772
BbvCI CCTCAGC 1 cut(s) 444
BbvI GCAGC 6 cut(s) 22, 33, 487, 1406, 1415, 1804
BccI CCATC 8 cut(s) 199, 419, 722, 829, 877, 1483, 1811, 1838
BceAI ACGGC 2 cut(s) 597, 1044
BciT130I CCWGG 5 cut(s) 112, 527, 1054, 1088, 1403
BciVI GTATCC 1 cut(s) 892
BclI TGATCA 2 cut(s) 1276, 1692
BcoDI GTCTC 1 cut(s) 541
BfaI CTAG 4 cut(s) 1125, 1616, 1871, 2000
BfmI CTRYAG 6 cut(s) 36, 47, 159, 376, 540, 1170
BfoI RGCGCY 1 cut(s) 1862
BfuI GTATCC 1 cut(s) 892
BisI GCNGC 7 cut(s) 36, 47, 476, 1196, 1395, 1429, 1793
BlsI GCNGC 7 cut(s) 37, 48, 477, 1197, 1396, 1430, 1794
Bme1390I CCNGG 5 cut(s) 112, 527, 1054, 1088, 1403
Bme18I GGWCC 6 cut(s) 80, 399, 440, 958, 1121, 1991
BmgT120I GGNCC 7 cut(s) 80, 399, 440, 958, 1121, 1359, 1991
BmiI GGNNCC 8 cut(s) 81, 400, 401, 691, 959, 960, 1122, 1992
BmrFI CCNGG 5 cut(s) 112, 527, 1054, 1088, 1403
BmrI ACTGGG 2 cut(s) 398, 791
BmsI GCATC 4 cut(s) 541, 1156, 1213, 1279
BmuI ACTGGG 2 cut(s) 398, 791
BpiI GAAGAC 1 cut(s) 1772
Bpu10I CCTNAGC 2 cut(s) 444, 1410
BpuEI CTTGAG 1 cut(s) 1644
BsaJI CCNNGG 7 cut(s) 60, 75, 525, 526, 749, 1053, 1986
BsaWI WCCGGW 2 cut(s) 641, 1800
Bsc4I CCNNNNNNNGG 7 cut(s) 25, 111, 491, 527, 797, 1679, 1807
Bse1I ACTGG 9 cut(s) 262, 404, 612, 786, 802, 1461, 1552, 1559, 1716
BseAI TCCGGA 1 cut(s) 1800
BseBI CCWGG 5 cut(s) 112, 527, 1054, 1088, 1403
BseDI CCNNGG 7 cut(s) 60, 75, 525, 526, 749, 1053, 1986
BseGI GGATG 8 cut(s) 556, 888, 1111, 1228, 1330, 1588, 1741, 1822
BseLI CCNNNNNNNGG 7 cut(s) 25, 111, 491, 527, 797, 1679, 1807
BseMII CTCAG 4 cut(s) 83, 458, 1424, 1914
BseNI ACTGG 9 cut(s) 262, 404, 612, 786, 802, 1461, 1552, 1559, 1716
BseXI GCAGC 6 cut(s) 22, 33, 487, 1406, 1415, 1804
BshFI GGCC 5 cut(s) 59, 558, 763, 1361, 1467
BsiSI CCGG 2 cut(s) 642, 1801
BslFI GGGAC 7 cut(s) 93, 268, 385, 544, 971, 1134, 1667
BslI CCNNNNNNNGG 7 cut(s) 25, 111, 491, 527, 797, 1679, 1807
BsmAI GTCTC 1 cut(s) 541
BsmFI GGGAC 7 cut(s) 93, 268, 385, 544, 971, 1134, 1667
BsmI GAATGC 1 cut(s) 1462
BsnI GGCC 5 cut(s) 59, 558, 763, 1361, 1467
Bsp13I TCCGGA 1 cut(s) 1800
Bsp143I GATC 7 cut(s) 28, 845, 1276, 1692, 1708, 1797, 1958
Bsp19I CCATGG 1 cut(s) 749
BspACI CCGC 4 cut(s) 20, 26, 273, 1196
BspANI GGCC 5 cut(s) 59, 558, 763, 1361, 1467
BspCNI CTCAG 4 cut(s) 82, 457, 1423, 1915
BspEI TCCGGA 1 cut(s) 1800
BspLI GGNNCC 8 cut(s) 81, 400, 401, 691, 959, 960, 1122, 1992
BspMAI CTGCAG 2 cut(s) 40, 51
BspPI GGATC 4 cut(s) 36, 1716, 1792, 1966
BspQI GCTCTTC 1 cut(s) 1038
BsrI ACTGG 9 cut(s) 262, 404, 612, 786, 802, 1461, 1552, 1559, 1716
BssECI CCNNGG 7 cut(s) 60, 75, 525, 526, 749, 1053, 1986
BssMI GATC 7 cut(s) 28, 845, 1276, 1692, 1708, 1797, 1958
BssNAI GTATAC 1 cut(s) 930
BssSI CACGAG 1 cut(s) 877
BssT1I CCWWGG 4 cut(s) 60, 75, 749, 1986
Bst1107I GTATAC 1 cut(s) 930
Bst2BI CACGAG 1 cut(s) 877
Bst2UI CCWGG 5 cut(s) 112, 527, 1054, 1088, 1403
Bst4CI ACNGT 8 cut(s) 13, 338, 415, 491, 535, 808, 893, 1595
Bst6I CTCTTC 1 cut(s) 1038
BstC8I GCNNGC 5 cut(s) 24, 199, 556, 1363, 1759
BstDEI CTNAG 7 cut(s) 69, 135, 444, 1293, 1410, 1891, 1923
BstDSI CCRYGG 1 cut(s) 749
BstEII GGTNACC 1 cut(s) 1082
BstF5I GGATG 8 cut(s) 556, 888, 1111, 1228, 1330, 1588, 1741, 1822
BstH2I RGCGCY 1 cut(s) 1862
BstHHI GCGC 1 cut(s) 1861
BstKTI GATC 7 cut(s) 31, 848, 1279, 1695, 1711, 1800, 1961
BstMAI GTCTC 1 cut(s) 541
BstMBI GATC 7 cut(s) 28, 845, 1276, 1692, 1708, 1797, 1958
BstMWI GCNNNNNNNGC 2 cut(s) 32, 551
BstNI CCWGG 5 cut(s) 112, 527, 1054, 1088, 1403
BstPI GGTNACC 1 cut(s) 1082
BstSCI CCNGG 5 cut(s) 110, 525, 1052, 1086, 1401
BstSFI CTRYAG 6 cut(s) 36, 47, 159, 376, 540, 1170
BstV1I GCAGC 6 cut(s) 22, 33, 487, 1406, 1415, 1804
BstV2I GAAGAC 1 cut(s) 1772
BstX2I RGATCY 1 cut(s) 1797
BstXI CCANNNNNNTGG 2 cut(s) 1475, 1566
BstYI RGATCY 1 cut(s) 1797
BstZ17I GTATAC 1 cut(s) 930
BsuI GTATCC 1 cut(s) 892
BsuRI GGCC 5 cut(s) 59, 558, 763, 1361, 1467
BtgI CCRYGG 1 cut(s) 749
BtgZI GCGATG 1 cut(s) 321
BtsCI GGATG 8 cut(s) 556, 888, 1111, 1228, 1330, 1588, 1741, 1822
BtsI GCAGTG 1 cut(s) 105
BtsIMutI CAGTG 6 cut(s) 105, 496, 619, 674, 703, 1468
Cac8I GCNNGC 5 cut(s) 24, 199, 556, 1363, 1759
CaiI CAGNNNCTG 1 cut(s) 1967
CfoI GCGC 1 cut(s) 1861
Cfr13I GGNCC 7 cut(s) 80, 399, 440, 958, 1121, 1359, 1991
Csp6I GTAC 4 cut(s) 451, 889, 1255, 1586
CspCI CAANNNNNGTGG 2 cut(s) 1523, 1558
CviAII CATG 3 cut(s) 356, 750, 1391
CviQI GTAC 4 cut(s) 451, 889, 1255, 1586
DdeI CTNAG 7 cut(s) 69, 135, 444, 1293, 1410, 1891, 1923
DpnI GATC 7 cut(s) 30, 847, 1278, 1694, 1710, 1799, 1960
DpnII GATC 7 cut(s) 28, 845, 1276, 1692, 1708, 1797, 1958
DraIII CACNNNGTG 1 cut(s) 1919
DrdI GACNNNNNNGTC 1 cut(s) 397
DseDI GACNNNNNNGTC 1 cut(s) 397
EaeI YGGCCR 3 cut(s) 556, 761, 1465
Eam1104I CTCTTC 1 cut(s) 1038
EarI CTCTTC 1 cut(s) 1038
Eco130I CCWWGG 4 cut(s) 60, 75, 749, 1986
Eco32I GATATC 2 cut(s) 91, 1270
Eco47I GGWCC 6 cut(s) 80, 399, 440, 958, 1121, 1991
Eco57I CTGAAG 2 cut(s) 679, 1961
Eco91I GGTNACC 1 cut(s) 1082
EcoO109I RGGNCCY 4 cut(s) 80, 399, 958, 1121
EcoO65I GGTNACC 1 cut(s) 1082
EcoRI GAATTC 1 cut(s) 313
EcoRII CCWGG 5 cut(s) 110, 525, 1052, 1086, 1401
EcoRV GATATC 2 cut(s) 91, 1270
EcoT14I CCWWGG 4 cut(s) 60, 75, 749, 1986
EcoT22I ATGCAT 1 cut(s) 1008
ErhI CCWWGG 4 cut(s) 60, 75, 749, 1986
FaeI CATG 3 cut(s) 359, 753, 1394
FalI AAGNNNNNCTT 2 cut(s) 677, 709
FaqI GGGAC 7 cut(s) 93, 268, 385, 544, 971, 1134, 1667
FatI CATG 3 cut(s) 355, 749, 1390
FauI CCCGC 1 cut(s) 27
FbaI TGATCA 2 cut(s) 1276, 1692
FblI GTMKAC 2 cut(s) 158, 929
Fnu4HI GCNGC 7 cut(s) 36, 47, 476, 1196, 1395, 1429, 1793
FokI GGATG 8 cut(s) 563, 895, 1118, 1235, 1337, 1595, 1748, 1829
Fsp4HI GCNGC 7 cut(s) 36, 47, 476, 1196, 1395, 1429, 1793
FspBI CTAG 4 cut(s) 1125, 1616, 1871, 2000
GlaI GCGC 1 cut(s) 1860
GluI GCNGC 7 cut(s) 36, 47, 476, 1196, 1395, 1429, 1793
HaeII RGCGCY 1 cut(s) 1862
HaeIII GGCC 5 cut(s) 59, 558, 763, 1361, 1467
HapII CCGG 2 cut(s) 642, 1801
HhaI GCGC 1 cut(s) 1861
Hin1II CATG 3 cut(s) 359, 753, 1394
Hin6I GCGC 1 cut(s) 1859
HinP1I GCGC 1 cut(s) 1859
HincII GTYRAC 1 cut(s) 811
HindII GTYRAC 1 cut(s) 811
HindIII AAGCTT 1 cut(s) 1385
HinfI GANTC 6 cut(s) 65, 187, 592, 832, 987, 1874
HpaII CCGG 2 cut(s) 642, 1801
HphI GGTGA 3 cut(s) 1152, 1465, 1943
Hpy166II GTNNAC 8 cut(s) 159, 497, 701, 788, 811, 930, 1026, 1545
Hpy188I TCNGA 3 cut(s) 72, 837, 1951
Hpy188III TCNNGA 7 cut(s) 843, 1412, 1661, 1696, 1775, 1801, 1994
Hpy8I GTNNAC 8 cut(s) 159, 497, 701, 788, 811, 930, 1026, 1545
HpyAV CCTTC 8 cut(s) 234, 531, 541, 619, 648, 703, 1091, 1213
HpyCH4III ACNGT 8 cut(s) 13, 338, 415, 491, 535, 808, 893, 1595
HpyCH4V TGCA 7 cut(s) 38, 49, 371, 871, 1006, 1226, 1394
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 551
HpyF3I CTNAG 7 cut(s) 69, 135, 444, 1293, 1410, 1891, 1923
Hsp92II CATG 3 cut(s) 359, 753, 1394
HspAI GCGC 1 cut(s) 1859
KflI GGGWCCC 2 cut(s) 399, 958
Kpn2I TCCGGA 1 cut(s) 1800
Ksp22I TGATCA 2 cut(s) 1276, 1692
Kzo9I GATC 7 cut(s) 28, 845, 1276, 1692, 1708, 1797, 1958
LguI GCTCTTC 1 cut(s) 1038
LmnI GCTCC 1 cut(s) 1249
Lsp1109I GCAGC 6 cut(s) 22, 33, 487, 1406, 1415, 1804
LweI GCATC 4 cut(s) 541, 1156, 1213, 1279
MaeI CTAG 4 cut(s) 1125, 1616, 1871, 2000
MaeIII GTNAC 6 cut(s) 127, 215, 1082, 1187, 2005, 2020
MalI GATC 7 cut(s) 30, 847, 1278, 1694, 1710, 1799, 1960
MboI GATC 7 cut(s) 28, 845, 1276, 1692, 1708, 1797, 1958
MboII GAAGA 5 cut(s) 816, 1025, 1777, 1848, 1946
MflI RGATCY 1 cut(s) 1797
MlsI TGGCCA 3 cut(s) 558, 763, 1467
MluNI TGGCCA 3 cut(s) 558, 763, 1467
MlyI GAGTC 1 cut(s) 996
MmeI TCCRAC 2 cut(s) 397, 1929
Mox20I TGGCCA 3 cut(s) 558, 763, 1467
Mph1103I ATGCAT 1 cut(s) 1008
MroI TCCGGA 1 cut(s) 1800
MscI TGGCCA 3 cut(s) 558, 763, 1467
MseI TTAA 8 cut(s) 291, 471, 1179, 1308, 1509, 1563, 1686, 1902
MslI CAYNNNNRTG 5 cut(s) 125, 196, 360, 881, 1338
Msp20I TGGCCA 3 cut(s) 558, 763, 1467
MspA1I CMGCKG 3 cut(s) 478, 515, 1198
MspI CCGG 2 cut(s) 642, 1801
MspR9I CCNGG 5 cut(s) 112, 527, 1054, 1088, 1403
Mva1269I GAATGC 1 cut(s) 1462
MvaI CCWGG 5 cut(s) 112, 527, 1054, 1088, 1403
MwoI GCNNNNNNNGC 2 cut(s) 32, 551
NcoI CCATGG 1 cut(s) 749
NdeII GATC 7 cut(s) 28, 845, 1276, 1692, 1708, 1797, 1958
NlaIII CATG 3 cut(s) 359, 753, 1394
NlaIV GGNNCC 8 cut(s) 81, 400, 401, 691, 959, 960, 1122, 1992
NmuCI GTSAC 2 cut(s) 127, 2005
NsiI ATGCAT 1 cut(s) 1008
PasI CCCWGGG 1 cut(s) 526
PciSI GCTCTTC 1 cut(s) 1038
PctI GAATGC 1 cut(s) 1462
PfeI GAWTC 5 cut(s) 65, 187, 592, 832, 1874
PflMI CCANNNNNTGG 1 cut(s) 797
PkrI GCNGC 7 cut(s) 37, 48, 477, 1197, 1396, 1430, 1794
PleI GAGTC 1 cut(s) 995
PpsI GAGTC 1 cut(s) 995
PpuMI RGGWCCY 4 cut(s) 80, 399, 958, 1121
Psp5II RGGWCCY 4 cut(s) 80, 399, 958, 1121
Psp6I CCWGG 5 cut(s) 110, 525, 1052, 1086, 1401
PspEI GGTNACC 1 cut(s) 1082
PspGI CCWGG 5 cut(s) 110, 525, 1052, 1086, 1401
PspN4I GGNNCC 8 cut(s) 81, 400, 401, 691, 959, 960, 1122, 1992
PspPI GGNCC 7 cut(s) 80, 399, 440, 958, 1121, 1359, 1991
PspPPI RGGWCCY 4 cut(s) 80, 399, 958, 1121
PstI CTGCAG 2 cut(s) 40, 51
PstNI CAGNNNCTG 1 cut(s) 1967
PsuI RGATCY 1 cut(s) 1797
PvuII CAGCTG 2 cut(s) 478, 515
RsaI GTAC 4 cut(s) 452, 890, 1256, 1587
RsaNI GTAC 4 cut(s) 451, 889, 1255, 1586
RseI CAYNNNNRTG 5 cut(s) 125, 196, 360, 881, 1338
SapI GCTCTTC 1 cut(s) 1038
SaqAI TTAA 8 cut(s) 291, 471, 1179, 1308, 1509, 1563, 1686, 1902
SatI GCNGC 7 cut(s) 36, 47, 476, 1196, 1395, 1429, 1793
Sau3AI GATC 7 cut(s) 28, 845, 1276, 1692, 1708, 1797, 1958
Sau96I GGNCC 7 cut(s) 80, 399, 440, 958, 1121, 1359, 1991
SchI GAGTC 1 cut(s) 996
ScrFI CCNGG 5 cut(s) 112, 527, 1054, 1088, 1403
SfaNI GCATC 4 cut(s) 541, 1156, 1213, 1279
SfcI CTRYAG 6 cut(s) 36, 47, 159, 376, 540, 1170
SinI GGWCC 6 cut(s) 80, 399, 440, 958, 1121, 1991
SmiMI CAYNNNNRTG 5 cut(s) 125, 196, 360, 881, 1338
SmlI CTYRAG 1 cut(s) 1659
SmoI CTYRAG 1 cut(s) 1659
SsiI CCGC 4 cut(s) 20, 26, 273, 1196
SspMI CTAG 4 cut(s) 1125, 1616, 1871, 2000
StyD4I CCNGG 5 cut(s) 110, 525, 1052, 1086, 1401
StyI CCWWGG 4 cut(s) 60, 75, 749, 1986
TaaI ACNGT 8 cut(s) 13, 338, 415, 491, 535, 808, 893, 1595
TaqI TCGA 1 cut(s) 389
TatI WGTACW 1 cut(s) 1254
TauI GCSGC 1 cut(s) 1198
TfiI GAWTC 5 cut(s) 65, 187, 592, 832, 1874
Tru1I TTAA 8 cut(s) 291, 471, 1179, 1308, 1509, 1563, 1686, 1902
Tru9I TTAA 8 cut(s) 291, 471, 1179, 1308, 1509, 1563, 1686, 1902
TscAI CASTG 6 cut(s) 112, 496, 619, 681, 703, 1468
TseFI GTSAC 2 cut(s) 127, 2005
TseI GCWGC 6 cut(s) 35, 46, 475, 1394, 1428, 1792
Tsp45I GTSAC 2 cut(s) 127, 2005
TspDTI ATGAA 6 cut(s) 200, 951, 1379, 1641, 1767, 1866
TspGWI ACGGA 2 cut(s) 453, 924
TspRI CASTG 6 cut(s) 112, 496, 619, 681, 703, 1468
Van91I CCANNNNNTGG 1 cut(s) 797
VpaK11BI GGWCC 6 cut(s) 80, 399, 440, 958, 1121, 1991
XapI RAATTY 4 cut(s) 52, 313, 850, 1156
XcmI CCANNNNNNNNNTGG 1 cut(s) 756
XmiI GTMKAC 2 cut(s) 158, 929
XspI CTAG 4 cut(s) 1125, 1616, 1871, 2000
Zsp2I ATGCAT 1 cut(s) 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.