Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001137.1

Orthogroup ID

OG0001378

Physical Location & Seq

Genomic Coordinates Reverse (-)

32624 .. 36477

Gene Structure 3854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001137.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2130 bp

atggccaccgttgctccccctgcagatcaagcagcagatttgcttcagaagttgtcattagattctcagaccaagaccctggaaattccagagcctacaaagaagccttctgttaaccaatatgggtctattgattctggcaacgctggaaatggtcagatccaatctgatcgctctgtgactccactgtcgactgatttcatggatcaatctttctcctatctcccaaatggttatccatcaacagcctattactatggaggctatgatgggactggcgactgggatgagtactcgagatatgtgaatccagagggggtagatatgacttccggggtttatggagataacgggtctcttatgtaccaccatggttatgggtatacaccgtatgggccttattcaccagcagcttcccctgttccaactatgggaaatgatggtcaattatatgggcctcaacactaccagtatccgccctatttccagccgctgactccaaccagtgggccatacactcccagtcctgtagcccctcagaatgacgtatccacatctttagctgctgaccaaaagcctctgcctgtggaaacagctaatggaatctctaatggcattgcaaataacggaagtgtgaaaggaaataacgtttcagctcccttatcgacatatcaaaccacatctttcaactccaatggttcatatggacgaggtgctttacctgcacgtgttcctactcctgggtaccaggacccaagatatggttatgacacagtacgttctccaattccttggttagatgccccacttttttcagatgggcagcatagacctgtggcaaatacacccattacttcttcaaactcgaatggcaatagaattccatctttgaggaatcagaactaccgtccaaattctcacttcatgggtttgcaccacccaagaccactgtcaggaataggtacagctcaagggtttatgaatagcagcatgtacccaagcaagttatttggccagtatggaaacacagttagatccggtctgggatttgggtctcatggttatgattcgcgatccaatggacgcacatggctggctgttgacaacaagtataaacaacccaggggacgtaatggtggttactatggatatggtaatgagaactcggatggtttaaatgaactcaacagaggacctcgggcgagaggctcaaagaaccaaaagagttttccccctagtgcattggctatcaagggacagaacgtgccagcaaatcttagtaatgatgaggaaaaggatacaagttctgttccagacagagagcagtacaacaaagcagattttccggaggattatactgatgccaaatttttcatcatcaagtcatatagtgaggatgatgtccataaaagcatcaagtataatgtttgggccagcacaccaaatggcaacaagaaacttcatgcagcatatcaggaggctcaggagaagactggtggctgccctgtatttctttttttctctgtcaataccagtgggcaatttgtgggtgtcgctgagatgttggggcctgttgattttaacaagaatttggagtactggcagcaagacaaatggaatggctgtttctctgtcaagtggcacgttgttaaagatgttcctaacagtttgctgaagcatattactcttgaaaataatgagaacaagcctgtgactaatagtagggacactcaagaggttaagttggaaccagggcttaaaatgataaaaatattcaaggagcattcaagcaaaacatgcattttggatgactttggattttatgagtcccgccagaagacaattcaggagaagaaggctaagcaacagcagcagtttcagaagcaggtatgggaaggaaaaaccctcgatgagaagaaagaggtggtgacaaatgggcacgtcaaaacaccaaattcatcggatgttccctttgagataactaaggagtccatctcaatagtgcatgccagcgaggagctgaaacctgcagaaaatggatcaattgcaactggagaagccccaaagggtgctaagccggttgtggctgagaagaaggttgtagcaaatggggttgcaaacggttgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

709

Amino Acids

77.75

Weight (kDa)

6.75

Isoelectric Point (pI)

31.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55500 AT1G55500 AT1G55500 AT1G55500 AT1G55500 AT1G55500 AT3G13460 AT3G13460 AT3G13460 AT3G13460
fragaria_vesca	FvH4_3g45840 FvH4_3g45840 FvH4_3g45840 FvH4_3g45840 FvH4_3g45841 FvH4_3g45841 FvH4_3g45841
malus_domestica	MD03G1002400.v1.1 MD03G1002500.v1.1 MD11G1002300.v1.1 MD11G1002400.v1.1
prunus_persica	Prupe.6G002200_v2.0.a1 Prupe.6G002200_v2.0.a1
pyrus_communis	pycom03g00230 pycom03g00240 pycom11g00210 pycom11g00220
rosa_chinensis	RchiOBHm_Chr5g0083931 RchiOBHm_Chr5g0083941
rosa_laevigata	RLG00000037065 RLG00000037066
rosa_multiflora	Rmu_co8176898.1_g000001 Rmu_co8377747.1_g000001 Rmu_co8387395.1_g000001 Rmu_sc0001137.1_g000004 Rmu_sc0001137.1_g000005 Rmu_sc0043081.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000680
rosa_rugosa	Rorug05G0487700 Rorug05G0487700 Rorug05G0487700 Rorug05G0487700 Rorug05G0487700
rosa_samantha	Rh5AG540500 Rh5AG540600 Rh5BG565500 Rh5BG565600 Rh5CG587400 Rh5CG587500 Rh5DG574100 Rh5DG574200
rosa_wichuraiana	Rw5G050260 Rw5G050270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	187
Acc36I	ACCTGC	3 cut(s)	730, 1876, 2035
Acc65I	GGTACC	1 cut(s)	744
AccB1I	GGYRCC	1 cut(s)	744
AccB7I	CCANNNNNTGG	2 cut(s)	506, 761
AccI	GTMKAC	2 cut(s)	191, 383
AccII	CGCG	1 cut(s)	1072
AccIII	TCCGGA	1 cut(s)	1345
AciI	CCGC	3 cut(s)	476, 491, 1831
AclI	AACGTT	1 cut(s)	648
AclWI	GGATC	5 cut(s)	154, 213, 1029, 1068, 2047
AcoI	YGGCCR	2 cut(s)	3, 1012
AcsI	RAATTY	6 cut(s)	84, 879, 913, 1367, 1588, 1954
AcuI	CTGAAG	2 cut(s)	29, 1694
AcvI	CACGTG	1 cut(s)	728
AfaI	GTAC	8 cut(s)	293, 365, 746, 777, 964, 995, 1328, 1598
AfiI	CCNNNNNNNGG	5 cut(s)	431, 506, 740, 761, 953
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	5 cut(s)	688, 861, 1691, 1777, 1788
AjiI	CACGTC	1 cut(s)	1942
AjnI	CCWGG	5 cut(s)	78, 739, 747, 1121, 1750
AjuI	GAANNNNNNNTTGG	2 cut(s)	1212, 1244
AluBI	AGCT	6 cut(s)	413, 563, 596, 656, 968, 2020
AluI	AGCT	6 cut(s)	413, 563, 596, 656, 968, 2020
Alw26I	GTCTC	2 cut(s)	360, 1059
AlwI	GGATC	5 cut(s)	154, 213, 1029, 1068, 2047
AlwNI	CAGNNNCTG	1 cut(s)	493
Ama87I	CYCGRG	2 cut(s)	295, 1197
Aor13HI	TCCGGA	1 cut(s)	1345
AoxI	GGCC	7 cut(s)	3, 395, 455, 509, 1012, 1431, 1568
ApeKI	GCWGC	9 cut(s)	32, 410, 563, 823, 987, 1466, 1500, 1603, 1870
ApoI	RAATTY	6 cut(s)	84, 879, 913, 1367, 1588, 1954
Asp718I	GGTACC	1 cut(s)	744
AspS9I	GGNCC	7 cut(s)	395, 455, 509, 751, 1193, 1431, 1568
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	2 cut(s)	396, 1939
AvaI	CYCGRG	2 cut(s)	295, 1197
AvaII	GGWCC	2 cut(s)	751, 1193
BaeGI	GKGCMC	1 cut(s)	1941
BalI	TGGCCA	2 cut(s)	5, 1014
BanI	GGYRCC	1 cut(s)	744
BbrPI	CACGTG	1 cut(s)	728
BbsI	GAAGAC	2 cut(s)	1496, 1844
BbvI	GCAGC	9 cut(s)	44, 422, 550, 835, 999, 1478, 1487, 1615, 1882
BccI	CCATC	7 cut(s)	247, 263, 434, 812, 892, 1163, 2000
BciT130I	CCWGG	5 cut(s)	80, 741, 749, 1123, 1752
BciVI	GTATCC	3 cut(s)	483, 559, 1291
BcnI	CCSGG	1 cut(s)	334
BcoDI	GTCTC	2 cut(s)	360, 1059
BfaI	CTAG	2 cut(s)	1236, 2128
BfmI	CTRYAG	3 cut(s)	21, 528, 2028
BfuAI	ACCTGC	3 cut(s)	730, 1876, 2035
BfuI	GTATCC	3 cut(s)	483, 559, 1291
BlpI	GCTNAGC	2 cut(s)	1860, 2073
BmcAI	AGTACT	2 cut(s)	293, 1598
Bme1390I	CCNGG	6 cut(s)	80, 334, 741, 749, 1123, 1752
Bme18I	GGWCC	2 cut(s)	751, 1193
BmeT110I	CYCGRG	2 cut(s)	295, 1197
BmgBI	CACGTC	1 cut(s)	1942
BmgT120I	GGNCC	7 cut(s)	395, 455, 509, 751, 1193, 1431, 1568
BmiI	GGNNCC	4 cut(s)	746, 753, 1569, 1749
BmrFI	CCNGG	6 cut(s)	80, 334, 741, 749, 1123, 1752
BmrI	ACTGGG	2 cut(s)	292, 516
BmsI	GCATC	3 cut(s)	790, 1351, 1422
BmuI	ACTGGG	2 cut(s)	292, 516
BoxI	GACNNNNGTC	1 cut(s)	949
BpiI	GAAGAC	2 cut(s)	1496, 1844
BplI	GAGNNNNNCTC	2 cut(s)	1979, 2011
BpmI	CTGGAG	1 cut(s)	2073
Bpu10I	CCTNAGC	1 cut(s)	1482
Bpu1102I	GCTNAGC	2 cut(s)	1860, 2073
BpuEI	CTTGAG	2 cut(s)	954, 1716
BpuMI	CCSGG	1 cut(s)	334
BsaAI	YACGTR	1 cut(s)	728
BsaI	GGTCTC	2 cut(s)	360, 1059
BsaJI	CCNNGG	9 cut(s)	78, 333, 370, 740, 791, 1121, 1122, 1196, 1751
BsaWI	WCCGGW	2 cut(s)	1037, 1345
BsaXI	ACNNNNNCTCC	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	5 cut(s)	431, 506, 740, 761, 953
Bse118I	RCCGGY	1 cut(s)	2077
Bse3DI	GCAATG	1 cut(s)	615
BseAI	TCCGGA	1 cut(s)	1345
BseBI	CCWGG	5 cut(s)	80, 741, 749, 1123, 1752
BseDI	CCNNGG	9 cut(s)	78, 333, 370, 740, 791, 1121, 1122, 1196, 1751
BseGI	GGATG	5 cut(s)	292, 1174, 1402, 1813, 1969
BseLI	CCNNNNNNNGG	5 cut(s)	431, 506, 740, 761, 953
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	5 cut(s)	80, 551, 1496, 1548, 2079
BseRI	GAGGAG	1 cut(s)	2030
BseSI	GKGCMC	1 cut(s)	1941
BseXI	GCAGC	9 cut(s)	44, 422, 550, 835, 999, 1478, 1487, 1615, 1882
BsgI	GTGCAG	1 cut(s)	708
Bsh1236I	CGCG	1 cut(s)	1072
BshFI	GGCC	7 cut(s)	5, 397, 457, 511, 1014, 1433, 1570
BshNI	GGYRCC	1 cut(s)	744
BsiHKCI	CYCGRG	2 cut(s)	295, 1197
BsiSI	CCGG	4 cut(s)	333, 1038, 1346, 2078
BslFI	GGGAC	5 cut(s)	286, 1140, 1269, 1739, 1813
BslI	CCNNNNNNNGG	5 cut(s)	431, 506, 740, 761, 953
BsmAI	GTCTC	2 cut(s)	360, 1059
BsmFI	GGGAC	5 cut(s)	286, 1140, 1269, 1739, 1813
BsmI	GAATGC	1 cut(s)	1783
BsnI	GGCC	7 cut(s)	5, 397, 457, 511, 1014, 1433, 1570
Bso31I	GGTCTC	2 cut(s)	360, 1059
BsoBI	CYCGRG	2 cut(s)	295, 1197
Bsp1286I	GDGCHC	1 cut(s)	1941
Bsp13I	TCCGGA	1 cut(s)	1345
Bsp143I	GATC	7 cut(s)	25, 159, 169, 205, 1034, 1073, 2039
Bsp1720I	GCTNAGC	2 cut(s)	1860, 2073
Bsp19I	CCATGG	1 cut(s)	370
Bsp68I	TCGCGA	1 cut(s)	1072
BspACI	CCGC	3 cut(s)	476, 491, 1831
BspANI	GGCC	7 cut(s)	5, 397, 457, 511, 1014, 1433, 1570
BspCNI	CTCAG	5 cut(s)	79, 550, 1495, 1549, 2080
BspEI	TCCGGA	1 cut(s)	1345
BspFNI	CGCG	1 cut(s)	1072
BspLI	GGNNCC	4 cut(s)	746, 753, 1569, 1749
BspMAI	CTGCAG	2 cut(s)	25, 2032
BspMI	ACCTGC	3 cut(s)	730, 1876, 2035
BspPI	GGATC	5 cut(s)	154, 213, 1029, 1068, 2047
BspT107I	GGYRCC	1 cut(s)	744
BspTNI	GGTCTC	2 cut(s)	360, 1059
BsrDI	GCAATG	1 cut(s)	615
BsrFI	RCCGGY	1 cut(s)	2077
BssAI	RCCGGY	1 cut(s)	2077
BssECI	CCNNGG	9 cut(s)	78, 333, 370, 740, 791, 1121, 1122, 1196, 1751
BssMI	GATC	7 cut(s)	25, 159, 169, 205, 1034, 1073, 2039
BssNAI	GTATAC	1 cut(s)	384
BssT1I	CCWWGG	2 cut(s)	370, 791
Bst1107I	GTATAC	1 cut(s)	384
Bst2UI	CCWGG	5 cut(s)	80, 741, 749, 1123, 1752
Bst4CI	ACNGT	9 cut(s)	10, 189, 390, 775, 908, 951, 1030, 1667, 2123
BstAPI	GCANNNNNTGC	1 cut(s)	1797
BstBAI	YACGTR	1 cut(s)	728
BstC8I	GCNNGC	5 cut(s)	1095, 1269, 1435, 2007, 2011
BstDEI	CTNAG	9 cut(s)	66, 537, 1277, 1482, 1557, 1860, 1983, 2073, 2088
BstDSI	CCRYGG	1 cut(s)	370
BstF5I	GGATG	5 cut(s)	292, 1174, 1402, 1813, 1969
BstFNI	CGCG	1 cut(s)	1072
BstKTI	GATC	7 cut(s)	28, 162, 172, 208, 1037, 1076, 2042
BstMAI	GTCTC	2 cut(s)	360, 1059
BstMBI	GATC	7 cut(s)	25, 159, 169, 205, 1034, 1073, 2039
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 20, 29, 722, 1797, 1870
BstNI	CCWGG	5 cut(s)	80, 741, 749, 1123, 1752
BstNSI	RCATGY	3 cut(s)	994, 1800, 2009
BstPAI	GACNNNNGTC	1 cut(s)	949
BstSCI	CCNGG	6 cut(s)	78, 332, 739, 747, 1121, 1750
BstSFI	CTRYAG	3 cut(s)	21, 528, 2028
BstSLI	GKGCMC	1 cut(s)	1941
BstUI	CGCG	1 cut(s)	1072
BstV1I	GCAGC	9 cut(s)	44, 422, 550, 835, 999, 1478, 1487, 1615, 1882
BstV2I	GAAGAC	2 cut(s)	1496, 1844
BstX2I	RGATCY	2 cut(s)	159, 1034
BstXI	CCANNNNNNTGG	3 cut(s)	79, 377, 792
BstYI	RGATCY	2 cut(s)	159, 1034
BstZ17I	GTATAC	1 cut(s)	384
BsuI	GTATCC	3 cut(s)	483, 559, 1291
BsuRI	GGCC	7 cut(s)	5, 397, 457, 511, 1014, 1433, 1570
BtgI	CCRYGG	1 cut(s)	370
BtrI	CACGTC	1 cut(s)	1942
BtsCI	GGATG	5 cut(s)	292, 1174, 1402, 1813, 1969
BtsIMutI	CAGTG	4 cut(s)	185, 511, 947, 1540
BtuMI	TCGCGA	1 cut(s)	1072
BveI	ACCTGC	3 cut(s)	730, 1876, 2035
Cac8I	GCNNGC	5 cut(s)	1095, 1269, 1435, 2007, 2011
CaiI	CAGNNNCTG	1 cut(s)	493
Cfr10I	RCCGGY	1 cut(s)	2077
Cfr13I	GGNCC	7 cut(s)	395, 455, 509, 751, 1193, 1431, 1568
CseI	GACGC	1 cut(s)	1092
Csp6I	GTAC	8 cut(s)	292, 364, 745, 776, 963, 994, 1327, 1597
CspCI	CAANNNNNGTGG	2 cut(s)	1516, 1551
CviAII	CATG	9 cut(s)	202, 371, 925, 991, 1058, 1089, 1463, 1797, 2006
CviQI	GTAC	8 cut(s)	292, 364, 745, 776, 963, 994, 1327, 1597
DdeI	CTNAG	9 cut(s)	66, 537, 1277, 1482, 1557, 1860, 1983, 2073, 2088
DpnI	GATC	7 cut(s)	27, 161, 171, 207, 1036, 1075, 2041
DpnII	GATC	7 cut(s)	25, 159, 169, 205, 1034, 1073, 2039
DraI	TTTAAA	1 cut(s)	1176
DrdI	GACNNNNNNGTC	1 cut(s)	187
DseDI	GACNNNNNNGTC	1 cut(s)	187
EaeI	YGGCCR	2 cut(s)	3, 1012
EciI	GGCGGA	1 cut(s)	465
Eco130I	CCWWGG	2 cut(s)	370, 791
Eco31I	GGTCTC	2 cut(s)	360, 1059
Eco47I	GGWCC	2 cut(s)	751, 1193
Eco57I	CTGAAG	2 cut(s)	29, 1694
Eco72I	CACGTG	1 cut(s)	728
Eco88I	CYCGRG	2 cut(s)	295, 1197
EcoO109I	RGGNCCY	3 cut(s)	751, 1193, 1568
EcoRI	GAATTC	1 cut(s)	879
EcoRII	CCWGG	5 cut(s)	78, 739, 747, 1121, 1750
EcoT14I	CCWWGG	2 cut(s)	370, 791
EcoT22I	ATGCAT	1 cut(s)	1802
ErhI	CCWWGG	2 cut(s)	370, 791
FaeI	CATG	9 cut(s)	205, 374, 928, 994, 1061, 1092, 1466, 1800, 2009
FaqI	GGGAC	5 cut(s)	286, 1140, 1269, 1739, 1813
FatI	CATG	9 cut(s)	201, 370, 924, 990, 1057, 1088, 1462, 1796, 2005
FauI	CCCGC	1 cut(s)	1838
FauNDI	CATATG	1 cut(s)	703
FblI	GTMKAC	2 cut(s)	191, 383
FokI	GGATG	5 cut(s)	299, 1181, 1409, 1820, 1976
FspBI	CTAG	2 cut(s)	1236, 2128
GsuI	CTGGAG	1 cut(s)	2073
HaeIII	GGCC	7 cut(s)	5, 397, 457, 511, 1014, 1433, 1570
HapII	CCGG	4 cut(s)	333, 1038, 1346, 2078
HgaI	GACGC	1 cut(s)	1092
Hin1II	CATG	9 cut(s)	205, 374, 928, 994, 1061, 1092, 1466, 1800, 2009
HincII	GTYRAC	3 cut(s)	115, 192, 1102
HindII	GTYRAC	3 cut(s)	115, 192, 1102
HpaI	GTTAAC	1 cut(s)	115
HpaII	CCGG	4 cut(s)	333, 1038, 1346, 2078
HphI	GGTGA	2 cut(s)	396, 1939
Hpy166II	GTNNAC	4 cut(s)	115, 192, 384, 1102
Hpy8I	GTNNAC	4 cut(s)	115, 192, 384, 1102
HpyAV	CCTTC	4 cut(s)	117, 1849, 1889, 2089
HpyCH4III	ACNGT	9 cut(s)	10, 189, 390, 775, 908, 951, 1030, 1667, 2123
HpyCH4IV	ACGT	8 cut(s)	546, 648, 727, 778, 1129, 1263, 1644, 1941
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 20, 29, 722, 1797, 1870
HpyF3I	CTNAG	9 cut(s)	66, 537, 1277, 1482, 1557, 1860, 1983, 2073, 2088
HpySE526I	ACGT	8 cut(s)	546, 648, 727, 778, 1129, 1263, 1644, 1941
Hsp92II	CATG	9 cut(s)	205, 374, 928, 994, 1061, 1092, 1466, 1800, 2009
Kpn2I	TCCGGA	1 cut(s)	1345
KpnI	GGTACC	1 cut(s)	748
KspAI	GTTAAC	1 cut(s)	115
Kzo9I	GATC	7 cut(s)	25, 159, 169, 205, 1034, 1073, 2039
LmnI	GCTCC	4 cut(s)	19, 661, 1780, 2017
Lsp1109I	GCAGC	9 cut(s)	44, 422, 550, 835, 999, 1478, 1487, 1615, 1882
LweI	GCATC	3 cut(s)	790, 1351, 1422
MaeI	CTAG	2 cut(s)	1236, 2128
MaeII	ACGT	8 cut(s)	546, 648, 727, 778, 1129, 1263, 1644, 1941
MaeIII	GTNAC	4 cut(s)	178, 1139, 1711, 1927
MalI	GATC	7 cut(s)	27, 161, 171, 207, 1036, 1075, 2041
MboI	GATC	7 cut(s)	25, 159, 169, 205, 1034, 1073, 2039
MboII	GAAGA	6 cut(s)	849, 1501, 1849, 1864, 1927, 2104
MfeI	CAATTG	1 cut(s)	2043
MflI	RGATCY	2 cut(s)	159, 1034
MhlI	GDGCHC	1 cut(s)	1941
MlsI	TGGCCA	2 cut(s)	5, 1014
MluNI	TGGCCA	2 cut(s)	5, 1014
MlyI	GAGTC	4 cut(s)	175, 490, 1835, 1997
MmeI	TCCRAC	3 cut(s)	449, 524, 1725
Mox20I	TGGCCA	2 cut(s)	5, 1014
Mph1103I	ATGCAT	1 cut(s)	1802
MroI	TCCGGA	1 cut(s)	1345
MscI	TGGCCA	2 cut(s)	5, 1014
MseI	TTAA	6 cut(s)	114, 1175, 1581, 1650, 1740, 1758
MslI	CAYNNNNRTG	2 cut(s)	375, 1062
Msp20I	TGGCCA	2 cut(s)	5, 1014
MspA1I	CMGCKG	1 cut(s)	493
MspI	CCGG	4 cut(s)	333, 1038, 1346, 2078
MspR9I	CCNGG	6 cut(s)	80, 334, 741, 749, 1123, 1752
MunI	CAATTG	1 cut(s)	2043
Mva1269I	GAATGC	1 cut(s)	1783
MvaI	CCWGG	5 cut(s)	80, 741, 749, 1123, 1752
MvnI	CGCG	1 cut(s)	1072
MwoI	GCNNNNNNNGC	6 cut(s)	11, 20, 29, 722, 1797, 1870
NciI	CCSGG	1 cut(s)	334
NcoI	CCATGG	1 cut(s)	370
NdeI	CATATG	1 cut(s)	703
NdeII	GATC	7 cut(s)	25, 159, 169, 205, 1034, 1073, 2039
NlaIII	CATG	9 cut(s)	205, 374, 928, 994, 1061, 1092, 1466, 1800, 2009
NlaIV	GGNNCC	4 cut(s)	746, 753, 1569, 1749
NmuCI	GTSAC	3 cut(s)	178, 1711, 1927
NruI	TCGCGA	1 cut(s)	1072
NsiI	ATGCAT	1 cut(s)	1802
NspI	RCATGY	3 cut(s)	994, 1800, 2009
PaeI	GCATGC	1 cut(s)	2009
PaeR7I	CTCGAG	1 cut(s)	295
PasI	CCCWGGG	1 cut(s)	1122
PctI	GAATGC	1 cut(s)	1783
PfeI	GAWTC	6 cut(s)	62, 134, 307, 603, 895, 1067
PflMI	CCANNNNNTGG	2 cut(s)	506, 761
PleI	GAGTC	4 cut(s)	175, 490, 1834, 1996
PmaCI	CACGTG	1 cut(s)	728
PmlI	CACGTG	1 cut(s)	728
PpsI	GAGTC	4 cut(s)	175, 490, 1834, 1996
Ppu21I	YACGTR	1 cut(s)	728
PpuMI	RGGWCCY	2 cut(s)	751, 1193
PshAI	GACNNNNGTC	1 cut(s)	949
Psp1406I	AACGTT	1 cut(s)	648
Psp5II	RGGWCCY	2 cut(s)	751, 1193
Psp6I	CCWGG	5 cut(s)	78, 739, 747, 1121, 1750
PspCI	CACGTG	1 cut(s)	728
PspGI	CCWGG	5 cut(s)	78, 739, 747, 1121, 1750
PspN4I	GGNNCC	4 cut(s)	746, 753, 1569, 1749
PspPI	GGNCC	7 cut(s)	395, 455, 509, 751, 1193, 1431, 1568
PspPPI	RGGWCCY	2 cut(s)	751, 1193
PstI	CTGCAG	2 cut(s)	25, 2032
PstNI	CAGNNNCTG	1 cut(s)	493
PsuI	RGATCY	2 cut(s)	159, 1034
RruI	TCGCGA	1 cut(s)	1072
RsaI	GTAC	8 cut(s)	293, 365, 746, 777, 964, 995, 1328, 1598
RsaNI	GTAC	8 cut(s)	292, 364, 745, 776, 963, 994, 1327, 1597
RseI	CAYNNNNRTG	2 cut(s)	375, 1062
SalI	GTCGAC	1 cut(s)	190
SaqAI	TTAA	6 cut(s)	114, 1175, 1581, 1650, 1740, 1758
Sau3AI	GATC	7 cut(s)	25, 159, 169, 205, 1034, 1073, 2039
Sau96I	GGNCC	7 cut(s)	395, 455, 509, 751, 1193, 1431, 1568
ScaI	AGTACT	2 cut(s)	293, 1598
SchI	GAGTC	4 cut(s)	175, 490, 1835, 1997
ScrFI	CCNGG	6 cut(s)	80, 334, 741, 749, 1123, 1752
SduI	GDGCHC	1 cut(s)	1941
SfaNI	GCATC	3 cut(s)	790, 1351, 1422
SfcI	CTRYAG	3 cut(s)	21, 528, 2028
Sfr274I	CTCGAG	1 cut(s)	295
SinI	GGWCC	2 cut(s)	751, 1193
SlaI	CTCGAG	1 cut(s)	295
SmiMI	CAYNNNNRTG	2 cut(s)	375, 1062
SmlI	CTYRAG	3 cut(s)	295, 969, 1731
SmoI	CTYRAG	3 cut(s)	295, 969, 1731
SphI	GCATGC	1 cut(s)	2009
SsiI	CCGC	3 cut(s)	476, 491, 1831
SspI	AATATT	1 cut(s)	1773
SspMI	CTAG	2 cut(s)	1236, 2128
StyD4I	CCNGG	6 cut(s)	78, 332, 739, 747, 1121, 1750
StyI	CCWWGG	2 cut(s)	370, 791
TaaI	ACNGT	9 cut(s)	10, 189, 390, 775, 908, 951, 1030, 1667, 2123
TaiI	ACGT	8 cut(s)	549, 651, 730, 781, 1132, 1266, 1647, 1944
TaqI	TCGA	5 cut(s)	191, 296, 665, 866, 1908
TatI	WGTACW	3 cut(s)	291, 1326, 1596
TauI	GCSGC	1 cut(s)	493
TfiI	GAWTC	6 cut(s)	62, 134, 307, 603, 895, 1067
Tru1I	TTAA	6 cut(s)	114, 1175, 1581, 1650, 1740, 1758
Tru9I	TTAA	6 cut(s)	114, 1175, 1581, 1650, 1740, 1758
TscAI	CASTG	4 cut(s)	192, 511, 954, 1540
TseFI	GTSAC	3 cut(s)	178, 1711, 1927
TseI	GCWGC	9 cut(s)	32, 410, 563, 823, 987, 1466, 1500, 1603, 1870
Tsp45I	GTSAC	3 cut(s)	178, 1711, 1927
TspDTI	ATGAA	8 cut(s)	190, 690, 913, 995, 1194, 1363, 1451, 1947
TspGWI	ACGGA	1 cut(s)	642
TspRI	CASTG	4 cut(s)	192, 511, 954, 1540
Van91I	CCANNNNNTGG	2 cut(s)	506, 761
VpaK11BI	GGWCC	2 cut(s)	751, 1193
XapI	RAATTY	6 cut(s)	84, 879, 913, 1367, 1588, 1954
XceI	RCATGY	3 cut(s)	994, 1800, 2009
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XhoI	CTCGAG	1 cut(s)	295
XmiI	GTMKAC	2 cut(s)	191, 383
XspI	CTAG	2 cut(s)	1236, 2128
ZrmI	AGTACT	2 cut(s)	293, 1598
Zsp2I	ATGCAT	1 cut(s)	1802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.