Rmu_co8387395.1_g000001

YTH domain family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8387395.1
OG0001378
Physical Location & Seq
Forward (+)
67 .. 865
799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8387395.1_g000001.1.cds

Sequence Viewer

Length: 570 bp
atgttggggcctgttgattttaacaagaatttggagtactggcagcaagacaaatggaatggctgtttctctgtcaagtggcacgttgttaaagatgttcctaacagtttgctgaagcatattactcttgaaaataatgagaacaagcctgtgactaatagtagggacactcaagaggttaagttggaaccagggcttaaaatgataaaaatattcaaggagcattcaagcaaaacatgcattttggatgactttggattttatgagtcccgccagaagacaattcaggagaagaaggctaagcaacagcagcagtttcagaagcaggtatgggaaggaaaaaccctcgatgagaagaaagaggtggtgacaaatgggcacgtcaaaacaccaaattcatcggatgttccctttgagataactaaggagtccatctcaatagtgcatgccagcgaggagctgaaacctgcagaaaatggatcaattgcaactggagaagccccaaagggtgctaagccggttgtggctgagaagaaggttgtagcaaatggggttgcaaacggttgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

189

Amino Acids

21.29

Weight (kDa)

8.31

Isoelectric Point (pI)

30.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 316, 475
AciI CCGC 1 cut(s) 271
AclWI GGATC 1 cut(s) 487
AcsI RAATTY 2 cut(s) 28, 394
AcuI CTGAAG 1 cut(s) 134
AfaI GTAC 1 cut(s) 38
AgsI TTSAA 3 cut(s) 131, 217, 228
AjiI CACGTC 1 cut(s) 382
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 1 cut(s) 460
AluI AGCT 1 cut(s) 460
AlwI GGATC 1 cut(s) 487
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 2 cut(s) 43, 310
ApoI RAATTY 2 cut(s) 28, 394
AspS9I GGNCC 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 379
BaeGI GKGCMC 1 cut(s) 381
BbsI GAAGAC 1 cut(s) 284
BbvI GCAGC 2 cut(s) 55, 322
BccI CCATC 1 cut(s) 440
BciT130I CCWGG 1 cut(s) 192
BfaI CTAG 1 cut(s) 568
BfmI CTRYAG 1 cut(s) 468
BfuAI ACCTGC 2 cut(s) 316, 475
BisI GCNGC 2 cut(s) 44, 311
BlpI GCTNAGC 2 cut(s) 300, 513
BlsI GCNGC 2 cut(s) 45, 312
BmcAI AGTACT 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 192
BmgBI CACGTC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 8
BmiI GGNNCC 2 cut(s) 9, 189
BmrFI CCNGG 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 284
BplI GAGNNNNNCTC 2 cut(s) 419, 451
BpmI CTGGAG 1 cut(s) 513
Bpu1102I GCTNAGC 2 cut(s) 300, 513
BpuEI CTTGAG 1 cut(s) 156
BsaJI CCNNGG 1 cut(s) 191
Bse118I RCCGGY 1 cut(s) 517
Bse1I ACTGG 2 cut(s) 44, 496
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 191
BseGI GGATG 2 cut(s) 253, 409
BseMII CTCAG 1 cut(s) 519
BseNI ACTGG 2 cut(s) 44, 496
BseRI GAGGAG 1 cut(s) 470
BseSI GKGCMC 1 cut(s) 381
BseXI GCAGC 2 cut(s) 55, 322
BshFI GGCC 1 cut(s) 10
BsiSI CCGG 1 cut(s) 518
BslFI GGGAC 2 cut(s) 179, 253
BsmFI GGGAC 2 cut(s) 179, 253
BsmI GAATGC 1 cut(s) 223
BsnI GGCC 1 cut(s) 10
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 1 cut(s) 479
Bsp1720I GCTNAGC 2 cut(s) 300, 513
BspACI CCGC 1 cut(s) 271
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 1 cut(s) 520
BspLI GGNNCC 2 cut(s) 9, 189
BspMAI CTGCAG 1 cut(s) 472
BspMI ACCTGC 2 cut(s) 316, 475
BspPI GGATC 1 cut(s) 487
BsrFI RCCGGY 1 cut(s) 517
BsrI ACTGG 2 cut(s) 44, 496
BssAI RCCGGY 1 cut(s) 517
BssECI CCNNGG 1 cut(s) 191
BssMI GATC 1 cut(s) 479
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 2 cut(s) 107, 563
BstAPI GCANNNNNTGC 1 cut(s) 237
BstC8I GCNNGC 2 cut(s) 447, 451
BstDEI CTNAG 4 cut(s) 300, 423, 513, 528
BstF5I GGATG 2 cut(s) 253, 409
BstKTI GATC 1 cut(s) 482
BstMBI GATC 1 cut(s) 479
BstMWI GCNNNNNNNGC 2 cut(s) 237, 310
BstNI CCWGG 1 cut(s) 192
BstNSI RCATGY 2 cut(s) 240, 449
BstSCI CCNGG 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 468
BstSLI GKGCMC 1 cut(s) 381
BstV1I GCAGC 2 cut(s) 55, 322
BstV2I GAAGAC 1 cut(s) 284
BsuRI GGCC 1 cut(s) 10
BtrI CACGTC 1 cut(s) 382
BtsCI GGATG 2 cut(s) 253, 409
BveI ACCTGC 2 cut(s) 316, 475
Cac8I GCNNGC 2 cut(s) 447, 451
Cfr10I RCCGGY 1 cut(s) 517
Cfr13I GGNCC 1 cut(s) 8
Csp6I GTAC 1 cut(s) 37
CviAII CATG 2 cut(s) 237, 446
CviJI RGCY 9 cut(s) 10, 63, 148, 196, 299, 460, 500, 517, 527
CviKI_1 RGCY 9 cut(s) 10, 63, 148, 196, 299, 460, 500, 517, 527
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 4 cut(s) 300, 423, 513, 528
DpnI GATC 1 cut(s) 481
DpnII GATC 1 cut(s) 479
Eco57I CTGAAG 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 8
EcoRII CCWGG 1 cut(s) 190
EcoT22I ATGCAT 1 cut(s) 242
FaeI CATG 2 cut(s) 240, 449
FaiI YATR 5 cut(s) 120, 238, 264, 331, 447
FaqI GGGAC 2 cut(s) 179, 253
FatI CATG 2 cut(s) 236, 445
FauI CCCGC 1 cut(s) 278
Fnu4HI GCNGC 2 cut(s) 44, 311
FokI GGATG 2 cut(s) 260, 416
Fsp4HI GCNGC 2 cut(s) 44, 311
FspBI CTAG 1 cut(s) 568
GluI GCNGC 2 cut(s) 44, 311
GsuI CTGGAG 1 cut(s) 513
HaeIII GGCC 1 cut(s) 10
HapII CCGG 1 cut(s) 518
Hin1II CATG 2 cut(s) 240, 449
HinfI GANTC 2 cut(s) 266, 428
HpaII CCGG 1 cut(s) 518
HphI GGTGA 1 cut(s) 379
Hpy188I TCNGA 2 cut(s) 321, 403
Hpy188III TCNNGA 3 cut(s) 128, 173, 287
HpyAV CCTTC 3 cut(s) 289, 329, 529
HpyCH4III ACNGT 2 cut(s) 107, 563
HpyCH4IV ACGT 2 cut(s) 84, 381
HpyCH4V TGCA 5 cut(s) 240, 445, 470, 488, 557
HpyF10VI GCNNNNNNNGC 2 cut(s) 237, 310
HpyF3I CTNAG 4 cut(s) 300, 423, 513, 528
HpySE526I ACGT 2 cut(s) 84, 381
Hsp92II CATG 2 cut(s) 240, 449
Kzo9I GATC 1 cut(s) 479
LmnI GCTCC 2 cut(s) 220, 457
Lsp1109I GCAGC 2 cut(s) 55, 322
MaeI CTAG 1 cut(s) 568
MaeII ACGT 2 cut(s) 84, 381
MaeIII GTNAC 2 cut(s) 151, 367
MalI GATC 1 cut(s) 481
MboI GATC 1 cut(s) 479
MboII GAAGA 4 cut(s) 289, 304, 367, 544
MfeI CAATTG 1 cut(s) 483
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 4 cut(s) 28, 282, 394, 483
MlyI GAGTC 2 cut(s) 275, 437
MmeI TCCRAC 1 cut(s) 165
MnlI CCTC 4 cut(s) 169, 355, 356, 448
Mph1103I ATGCAT 1 cut(s) 242
MseI TTAA 4 cut(s) 21, 90, 180, 198
MspI CCGG 1 cut(s) 518
MspR9I CCNGG 1 cut(s) 192
MunI CAATTG 1 cut(s) 483
Mva1269I GAATGC 1 cut(s) 223
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 2 cut(s) 237, 310
NdeII GATC 1 cut(s) 479
NlaIII CATG 2 cut(s) 240, 449
NlaIV GGNNCC 2 cut(s) 9, 189
NmuCI GTSAC 2 cut(s) 151, 367
NsiI ATGCAT 1 cut(s) 242
NspI RCATGY 2 cut(s) 240, 449
PaeI GCATGC 1 cut(s) 449
PctI GAATGC 1 cut(s) 223
PkrI GCNGC 2 cut(s) 45, 312
PleI GAGTC 2 cut(s) 274, 436
PpsI GAGTC 2 cut(s) 274, 436
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 2 cut(s) 9, 189
PspPI GGNCC 1 cut(s) 8
PstI CTGCAG 1 cut(s) 472
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SaqAI TTAA 4 cut(s) 21, 90, 180, 198
SatI GCNGC 2 cut(s) 44, 311
Sau3AI GATC 1 cut(s) 479
Sau96I GGNCC 1 cut(s) 8
ScaI AGTACT 1 cut(s) 38
SchI GAGTC 2 cut(s) 275, 437
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 1 cut(s) 381
SetI ASST 8 cut(s) 87, 180, 330, 366, 384, 462, 469, 540
SfcI CTRYAG 1 cut(s) 468
SmlI CTYRAG 1 cut(s) 171
SmoI CTYRAG 1 cut(s) 171
SphI GCATGC 1 cut(s) 449
Sse9I AATT 4 cut(s) 28, 282, 394, 483
SsiI CCGC 1 cut(s) 271
SspI AATATT 1 cut(s) 213
SspMI CTAG 1 cut(s) 568
StyD4I CCNGG 1 cut(s) 190
TaaI ACNGT 2 cut(s) 107, 563
TaiI ACGT 2 cut(s) 87, 384
TaqI TCGA 1 cut(s) 348
TasI AATT 4 cut(s) 28, 282, 394, 483
TatI WGTACW 1 cut(s) 36
Tru1I TTAA 4 cut(s) 21, 90, 180, 198
Tru9I TTAA 4 cut(s) 21, 90, 180, 198
TseFI GTSAC 2 cut(s) 151, 367
TseI GCWGC 2 cut(s) 43, 310
Tsp45I GTSAC 2 cut(s) 151, 367
TspDTI ATGAA 1 cut(s) 387
XapI RAATTY 2 cut(s) 28, 394
XceI RCATGY 2 cut(s) 240, 449
XspI CTAG 1 cut(s) 568
ZrmI AGTACT 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.