Prupe.6G002200_v2.0.a1

YTH domain family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001378
Physical Location & Seq
Reverse (-)
285783 .. 290377
4595 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G002200.1

Sequence Viewer

Length: 2115 bp
ATGGCCACCGTTGCTCCTCCCGCGGATCAAGCAGCAGATTTGCTACAGAAGTTGTCATTAGATTCTCAAACCAAGACCCTGGAAATTCCTGAGCCAACCAAGAAGCCTTCTGTTAATCAATATGGGTCTATTGATTCTGGAAATGCTGCGAATGGTCAGATCCAATCTGAGCGCTCCGTGACTCCGTTGTTACCTGATTTCATGGATCCGTCTCTATGCTATCTCCCGAATGCTTATCCATCTGCCTATTACTATGGAGGCTATGATGGGACTGGCAACGAGTGGGATGACTACTCGAGATATGTAAATCCTGAGGGAGTTGAGATGACTTCTGGAGTTTATGGGGATAATGGGTCTCTTTTATACCACCATGGGTATGGGTATGCACCATATGGTCCATATTCACCGGCAGGTTCCCCAGTTCCAACTATGGGAAATGATGGTCAGTTATATGGGCCTCAGCACTACCAATATCCTCCCTATTTCCAGCCTCTGACTCCAACCAGTGGACCGTATACCCCCAGCCCTGCTGCCCCTCAAAGTGAGGTATCCACCTCTGTAGGTGCTGACCATAAGCCTCTGCCTGTGGAAACAGTGAATGGGATTTCTAACGGCATTGCAAATGGTGGAAGTGTGAAAGGAAATAATGTTTCAGCTCCCTTATCAACATATCAAAACTCATCTTTCAACTCCAATGGTTCATATGGAAGGGGTGCTTTGCCAGGTCGGGTTCCTACTCCTGGATACCAGGACCCAAGATATGGGTTTGACGGGTTACGTTCTCCCCTTCCGTGGTTGGATGCCCCACTTTTTTCTGATGGGCAGCCTAGACCTGTTACAAGTACAACAATTACTTCTTCAATCTCAAATGGCAATAACATTCCATCTGCAAGGAATCAGAATTACCGTCCAAATTCTCACTTCATGGGTTTGCACCACCCAAGGCCGTTGTCTGGAATGGGCACAGCTCAAGGGTTTATAAATAGGATGTACCCCAACAAACTTTATGGTCAGTATGGAAACACAGTTAGATCTGGTATGGGCTTTGGATCTCATGGTTATGATTCGCGAACCAGTGGACGCGCATGGCTGGCTGTTGACAGCAAGTACAAACCCAGGGGAAGAAATGGCGGATACTATGGATATGGTAATGAGAATATGGATGGTTTGAATGAACTCAACAGGGGACCTCGGGCAAAGAGCTCCAAGAATCAAAAGGGTTTTGTGCCTAATGCATTAGTGATCAAGGGGCAGGTGCCAACAAATCTTAATAATGATGAGGAAAAGGATAAAACAAGTGTCCCAGACCGAGAACAATACAATAAAGCTGATTTCCCCGAGGATTATACTGATGCCAAATTCTTCATCATTAAGTCATACAGTGAGGATGATGTTCATAAGAGCATTAAGTATAATGTTTGGGCCAGCACTCCAAATGGCAACAAGAAGCTTCATGCTGCATACCAGGAGGCTCAGGAGAAATCTGGTGGCTGTCCTGTATTTCTTTTATTCTCGGTCAATACCAGTGGACAATTTGTAGGCCTTGCAGAGATGTTGGGGCCTGTTGATTTTAACAAGAATCTAGAGTACTGGCAGCAAGACAAGTGGAATGGCTGTTTCCCTGTCAAGTGGCATATTGTTAAAGATGTTCCCAACAGTTTGTTGAAGCACATTACTCTTGAGAATAATGAGAACAAACCTGTGACCAACAGTAGGGACACTCAGGAGGTCAAATTGGAGCCAGGCCTTAAAATGATTAAAATTTTCAAGGAACATTTAAGCAAAACATGCATTTTGGATGACTTTGGGTTTTATGAGTCCCGCCAGAAGACAATTCAGGAGAAGAAGGCTAAGCAACAGCAGTTTCAGAAACAGGTATGGGAAGGAAAAGCCATTGATGAGAAGAAAGAGGTAGCAAATGGGCAACTGAAAACTCAAAATTCATCAGAGGTTCCCTCTGATTTGATCAAAGAATCTATTCCAGCAGTGCATGCAAGTGAAGAGGTGAAACTTGCAGAAAATGGATTGATTGCAGCTGGAGATGCCCCAAAGGGTGCTAAGCCAGTTGTGTCAGAGAAGAGGGTTGTAGCGAATGGGGTTGCGAACGGTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

705

Amino Acids

77.07

Weight (kDa)

6.93

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 980
AarI CACCTGC 1 cut(s) 1243
Acc36I ACCTGC 2 cut(s) 401, 1243
AccB1I GGYRCC 1 cut(s) 1255
AccB7I CCANNNNNTGG 2 cut(s) 506, 761
AccI GTMKAC 1 cut(s) 515
AccII CGCG 3 cut(s) 23, 1069, 1083
AciI CCGC 4 cut(s) 21, 23, 1131, 1822
AclWI GGATC 5 cut(s) 33, 154, 200, 213, 1057
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 84, 913, 1358, 1761, 1939
AfaI GTAC 4 cut(s) 844, 992, 1109, 1589
AfeI AGCGCT 1 cut(s) 173
AfiI CCNNNNNNNGG 7 cut(s) 431, 506, 740, 761, 792, 953, 1713
AgsI TTSAA 5 cut(s) 688, 861, 1171, 1666, 1768
AjnI CCWGG 7 cut(s) 78, 721, 739, 747, 1115, 1464, 1741
AluBI AGCT 6 cut(s) 656, 968, 1203, 1328, 1450, 2036
AluI AGCT 6 cut(s) 656, 968, 1203, 1328, 1450, 2036
Alw21I GWGCWC 1 cut(s) 1205
Alw26I GTCTC 2 cut(s) 216, 360
AlwI GGATC 5 cut(s) 33, 154, 200, 213, 1057
AlwNI CAGNNNCTG 1 cut(s) 493
Ama87I CYCGRG 3 cut(s) 295, 1191, 1337
Aor51HI AGCGCT 1 cut(s) 173
AoxI GGCC 7 cut(s) 3, 455, 944, 1422, 1540, 1559, 1744
ApeKI GCWGC 7 cut(s) 32, 146, 530, 823, 1457, 1594, 2033
ApoI RAATTY 5 cut(s) 84, 913, 1358, 1761, 1939
Asp700I GAANNNNTTC 1 cut(s) 1977
AspLEI GCGC 2 cut(s) 174, 1085
AspS9I GGNCC 7 cut(s) 395, 455, 509, 751, 1187, 1422, 1559
AsuHPI GGTGA 2 cut(s) 396, 2017
AvaI CYCGRG 3 cut(s) 295, 1191, 1337
AvaII GGWCC 4 cut(s) 395, 509, 751, 1187
AxyI CCTNAGG 1 cut(s) 312
BaeGI GKGCMC 1 cut(s) 965
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 1255
BanII GRGCYC 1 cut(s) 1205
BbsI GAAGAC 1 cut(s) 1835
Bbv12I GWGCWC 1 cut(s) 1205
BbvCI CCTCAGC 1 cut(s) 459
BbvI GCAGC 7 cut(s) 44, 133, 517, 835, 1444, 1606, 2045
BccI CCATC 6 cut(s) 247, 260, 434, 812, 892, 1157
BceAI ACGGC 2 cut(s) 628, 931
BciT130I CCWGG 7 cut(s) 80, 723, 741, 749, 1117, 1466, 1743
BciVI GTATCC 3 cut(s) 559, 737, 1127
BclI TGATCA 2 cut(s) 1242, 1965
BcoDI GTCTC 2 cut(s) 216, 360
BfaI CTAG 3 cut(s) 828, 1583, 2113
BfmI CTRYAG 2 cut(s) 44, 558
BfoI RGCGCY 1 cut(s) 175
BfuAI ACCTGC 2 cut(s) 401, 1243
BfuI GTATCC 3 cut(s) 559, 737, 1127
BglII AGATCT 1 cut(s) 1031
BisI GCNGC 7 cut(s) 33, 147, 531, 824, 1458, 1595, 2034
BlpI GCTNAGC 2 cut(s) 1851, 2058
BlsI GCNGC 7 cut(s) 34, 148, 532, 825, 1459, 1596, 2035
BmcAI AGTACT 1 cut(s) 1589
Bme1390I CCNGG 7 cut(s) 80, 723, 741, 749, 1117, 1466, 1743
Bme18I GGWCC 4 cut(s) 395, 509, 751, 1187
BmeT110I CYCGRG 3 cut(s) 295, 1191, 1337
BmgT120I GGNCC 7 cut(s) 395, 455, 509, 751, 1187, 1422, 1559
BmiI GGNNCC 9 cut(s) 207, 415, 732, 753, 1188, 1257, 1560, 1740, 1953
BmrFI CCNGG 7 cut(s) 80, 723, 741, 749, 1117, 1466, 1743
BmrI ACTGGG 1 cut(s) 413
BmsI GCATC 3 cut(s) 790, 1342, 2032
BmuI ACTGGG 1 cut(s) 413
BpiI GAAGAC 1 cut(s) 1835
BplI GAGNNNNNCTC 2 cut(s) 1940, 1972
BpmI CTGGAG 2 cut(s) 354, 2058
Bpu10I CCTNAGC 3 cut(s) 90, 459, 1473
Bpu1102I GCTNAGC 2 cut(s) 1851, 2058
BpuEI CTTGAG 2 cut(s) 954, 1700
BsaI GGTCTC 1 cut(s) 360
BsaJI CCNNGG 9 cut(s) 21, 78, 370, 791, 941, 1115, 1116, 1190, 1338
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 7 cut(s) 431, 506, 740, 761, 792, 953, 1713
Bse118I RCCGGY 1 cut(s) 406
Bse1I ACTGG 7 cut(s) 277, 419, 504, 1074, 1524, 1595, 2063
Bse21I CCTNAGG 1 cut(s) 312
Bse3DI GCAATG 1 cut(s) 615
BseBI CCWGG 7 cut(s) 80, 723, 741, 749, 1117, 1466, 1743
BseDI CCNNGG 9 cut(s) 21, 78, 370, 791, 941, 1115, 1116, 1190, 1338
BseGI GGATG 6 cut(s) 292, 805, 993, 1168, 1393, 1804
BseLI CCNNNNNNNGG 7 cut(s) 431, 506, 740, 761, 792, 953, 1713
BseMI GCAATG 1 cut(s) 615
BseMII CTCAG 6 cut(s) 81, 159, 303, 473, 1487, 1736
BseNI ACTGG 7 cut(s) 277, 419, 504, 1074, 1524, 1595, 2063
BseRI GAGGAG 1 cut(s) 6
BseSI GKGCMC 1 cut(s) 965
BseXI GCAGC 7 cut(s) 44, 133, 517, 835, 1444, 1606, 2045
BseYI CCCAGC 1 cut(s) 521
Bsh1236I CGCG 3 cut(s) 23, 1069, 1083
BshFI GGCC 7 cut(s) 5, 457, 946, 1424, 1542, 1561, 1746
BshNI GGYRCC 1 cut(s) 1255
BsiHKAI GWGCWC 1 cut(s) 1205
BsiHKCI CYCGRG 3 cut(s) 295, 1191, 1337
BsiSI CCGG 1 cut(s) 407
BslFI GGGAC 5 cut(s) 283, 1200, 1286, 1730, 1804
BslI CCNNNNNNNGG 7 cut(s) 431, 506, 740, 761, 792, 953, 1713
BsmAI GTCTC 2 cut(s) 216, 360
BsmBI CGTCTC 1 cut(s) 216
BsmFI GGGAC 5 cut(s) 283, 1200, 1286, 1730, 1804
BsmI GAATGC 1 cut(s) 235
BsnI GGCC 7 cut(s) 5, 457, 946, 1424, 1542, 1561, 1746
Bso31I GGTCTC 1 cut(s) 360
BsoBI CYCGRG 3 cut(s) 295, 1191, 1337
Bsp1286I GDGCHC 2 cut(s) 965, 1205
Bsp143I GATC 7 cut(s) 25, 159, 205, 1031, 1049, 1242, 1965
Bsp1720I GCTNAGC 2 cut(s) 1851, 2058
Bsp19I CCATGG 1 cut(s) 370
Bsp68I TCGCGA 1 cut(s) 1069
BspACI CCGC 4 cut(s) 21, 23, 1131, 1822
BspANI GGCC 7 cut(s) 5, 457, 946, 1424, 1542, 1561, 1746
BspCNI CTCAG 6 cut(s) 82, 160, 304, 472, 1486, 1735
BspFNI CGCG 3 cut(s) 23, 1069, 1083
BspLI GGNNCC 9 cut(s) 207, 415, 732, 753, 1188, 1257, 1560, 1740, 1953
BspMI ACCTGC 2 cut(s) 401, 1243
BspPI GGATC 5 cut(s) 33, 154, 200, 213, 1057
BspT107I GGYRCC 1 cut(s) 1255
BspTNI GGTCTC 1 cut(s) 360
BsrDI GCAATG 1 cut(s) 615
BsrFI RCCGGY 1 cut(s) 406
BsrI ACTGG 7 cut(s) 277, 419, 504, 1074, 1524, 1595, 2063
BssAI RCCGGY 1 cut(s) 406
BssECI CCNNGG 9 cut(s) 21, 78, 370, 791, 941, 1115, 1116, 1190, 1338
BssMI GATC 7 cut(s) 25, 159, 205, 1031, 1049, 1242, 1965
BssNAI GTATAC 1 cut(s) 516
BssT1I CCWWGG 2 cut(s) 370, 941
Bst1107I GTATAC 1 cut(s) 516
Bst2UI CCWGG 7 cut(s) 80, 723, 741, 749, 1117, 1466, 1743
Bst4CI ACNGT 9 cut(s) 10, 513, 595, 908, 1027, 1382, 1658, 1712, 2108
Bst6I CTCTTC 2 cut(s) 1995, 2072
BstAPI GCANNNNNTGC 2 cut(s) 1788, 1991
BstC8I GCNNGC 3 cut(s) 1092, 1426, 1992
BstDEI CTNAG 8 cut(s) 90, 168, 312, 459, 1473, 1722, 1851, 2058
BstDSI CCRYGG 3 cut(s) 21, 370, 791
BstF5I GGATG 6 cut(s) 292, 805, 993, 1168, 1393, 1804
BstFNI CGCG 3 cut(s) 23, 1069, 1083
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 2 cut(s) 174, 1085
BstKTI GATC 7 cut(s) 28, 162, 208, 1034, 1052, 1245, 1968
BstMAI GTCTC 2 cut(s) 216, 360
BstMBI GATC 7 cut(s) 25, 159, 205, 1031, 1049, 1242, 1965
BstMWI GCNNNNNNNGC 7 cut(s) 11, 20, 29, 1091, 1788, 1991, 2042
BstNI CCWGG 7 cut(s) 80, 723, 741, 749, 1117, 1466, 1743
BstNSI RCATGY 2 cut(s) 1791, 1994
BstSCI CCNGG 7 cut(s) 78, 721, 739, 747, 1115, 1464, 1741
BstSFI CTRYAG 2 cut(s) 44, 558
BstSLI GKGCMC 1 cut(s) 965
BstUI CGCG 3 cut(s) 23, 1069, 1083
BstV1I GCAGC 7 cut(s) 44, 133, 517, 835, 1444, 1606, 2045
BstV2I GAAGAC 1 cut(s) 1835
BstX2I RGATCY 4 cut(s) 159, 205, 1031, 1049
BstXI CCANNNNNNTGG 2 cut(s) 79, 377
BstYI RGATCY 4 cut(s) 159, 205, 1031, 1049
BstZ17I GTATAC 1 cut(s) 516
Bsu36I CCTNAGG 1 cut(s) 312
BsuI GTATCC 3 cut(s) 559, 737, 1127
BsuRI GGCC 7 cut(s) 5, 457, 946, 1424, 1542, 1561, 1746
BtgI CCRYGG 3 cut(s) 21, 370, 791
BtsCI GGATG 6 cut(s) 292, 805, 993, 1168, 1393, 1804
BtsI GCAGTG 1 cut(s) 1992
BtsIMutI CAGTG 6 cut(s) 511, 600, 1081, 1387, 1531, 1992
BtuMI TCGCGA 1 cut(s) 1069
BveI ACCTGC 2 cut(s) 401, 1243
Cac8I GCNNGC 3 cut(s) 1092, 1426, 1992
CaiI CAGNNNCTG 1 cut(s) 493
CfoI GCGC 2 cut(s) 174, 1085
Cfr10I RCCGGY 1 cut(s) 406
Cfr13I GGNCC 7 cut(s) 395, 455, 509, 751, 1187, 1422, 1559
Cfr42I CCGCGG 1 cut(s) 24
CseI GACGC 1 cut(s) 1089
Csp6I GTAC 4 cut(s) 843, 991, 1108, 1588
CspCI CAANNNNNGTGG 4 cut(s) 1507, 1542, 1586, 1621
CviAII CATG 8 cut(s) 202, 371, 925, 1055, 1086, 1454, 1788, 1991
CviQI GTAC 4 cut(s) 843, 991, 1108, 1588
DdeI CTNAG 8 cut(s) 90, 168, 312, 459, 1473, 1722, 1851, 2058
DpnI GATC 7 cut(s) 27, 161, 207, 1033, 1051, 1244, 1967
DpnII GATC 7 cut(s) 25, 159, 205, 1031, 1049, 1242, 1965
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 1995, 2072
EarI CTCTTC 2 cut(s) 1995, 2072
EciI GGCGGA 1 cut(s) 1146
Ecl136II GAGCTC 1 cut(s) 1203
Eco130I CCWWGG 2 cut(s) 370, 941
Eco147I AGGCCT 2 cut(s) 1542, 1746
Eco24I GRGCYC 1 cut(s) 1205
Eco31I GGTCTC 1 cut(s) 360
Eco47I GGWCC 4 cut(s) 395, 509, 751, 1187
Eco47III AGCGCT 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 1203
Eco81I CCTNAGG 1 cut(s) 312
Eco88I CYCGRG 3 cut(s) 295, 1191, 1337
EcoICRI GAGCTC 1 cut(s) 1203
EcoO109I RGGNCCY 3 cut(s) 751, 1187, 1559
EcoRII CCWGG 7 cut(s) 78, 721, 739, 747, 1115, 1464, 1741
EcoT14I CCWWGG 2 cut(s) 370, 941
EcoT22I ATGCAT 2 cut(s) 1237, 1793
EcoT38I GRGCYC 1 cut(s) 1205
ErhI CCWWGG 2 cut(s) 370, 941
Esp3I CGTCTC 1 cut(s) 216
FaeI CATG 8 cut(s) 205, 374, 928, 1058, 1089, 1457, 1791, 1994
FalI AAGNNNNNCTT 2 cut(s) 700, 732
FaqI GGGAC 5 cut(s) 283, 1200, 1286, 1730, 1804
FatI CATG 8 cut(s) 201, 370, 924, 1054, 1085, 1453, 1787, 1990
FauI CCCGC 2 cut(s) 28, 1829
FauNDI CATATG 2 cut(s) 391, 703
FbaI TGATCA 2 cut(s) 1242, 1965
FblI GTMKAC 1 cut(s) 515
Fnu4HI GCNGC 7 cut(s) 33, 147, 531, 824, 1458, 1595, 2034
FokI GGATG 6 cut(s) 299, 812, 1000, 1175, 1400, 1811
FriOI GRGCYC 1 cut(s) 1205
Fsp4HI GCNGC 7 cut(s) 33, 147, 531, 824, 1458, 1595, 2034
FspBI CTAG 3 cut(s) 828, 1583, 2113
GlaI GCGC 2 cut(s) 173, 1084
GluI GCNGC 7 cut(s) 33, 147, 531, 824, 1458, 1595, 2034
GsaI CCCAGC 1 cut(s) 525
GsuI CTGGAG 2 cut(s) 354, 2058
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 7 cut(s) 5, 457, 946, 1424, 1542, 1561, 1746
HapII CCGG 1 cut(s) 407
HgaI GACGC 1 cut(s) 1089
HhaI GCGC 2 cut(s) 174, 1085
Hin1II CATG 8 cut(s) 205, 374, 928, 1058, 1089, 1457, 1791, 1994
Hin6I GCGC 2 cut(s) 172, 1083
HinP1I GCGC 2 cut(s) 172, 1083
HincII GTYRAC 1 cut(s) 1099
HindII GTYRAC 1 cut(s) 1099
HindIII AAGCTT 1 cut(s) 1448
HpaII CCGG 1 cut(s) 407
HphI GGTGA 2 cut(s) 396, 2017
Hpy166II GTNNAC 5 cut(s) 509, 516, 1079, 1099, 1529
Hpy188I TCNGA 9 cut(s) 159, 169, 495, 817, 900, 1869, 1948, 1960, 2074
Hpy8I GTNNAC 5 cut(s) 509, 516, 1079, 1099, 1529
HpyAV CCTTC 5 cut(s) 117, 702, 797, 1840, 1877
HpyCH4III ACNGT 9 cut(s) 10, 513, 595, 908, 1027, 1382, 1658, 1712, 2108
HpyCH4IV ACGT 1 cut(s) 778
HpyF10VI GCNNNNNNNGC 7 cut(s) 11, 20, 29, 1091, 1788, 1991, 2042
HpyF3I CTNAG 8 cut(s) 90, 168, 312, 459, 1473, 1722, 1851, 2058
HpySE526I ACGT 1 cut(s) 778
Hsp92II CATG 8 cut(s) 205, 374, 928, 1058, 1089, 1457, 1791, 1994
HspAI GCGC 2 cut(s) 172, 1083
Ksp22I TGATCA 2 cut(s) 1242, 1965
KspI CCGCGG 1 cut(s) 24
Kzo9I GATC 7 cut(s) 25, 159, 205, 1031, 1049, 1242, 1965
LmnI GCTCC 5 cut(s) 19, 179, 661, 1208, 1738
Lsp1109I GCAGC 7 cut(s) 44, 133, 517, 835, 1444, 1606, 2045
LweI GCATC 3 cut(s) 790, 1342, 2032
MaeI CTAG 3 cut(s) 828, 1583, 2113
MaeII ACGT 1 cut(s) 778
MaeIII GTNAC 5 cut(s) 178, 189, 774, 835, 1702
MalI GATC 7 cut(s) 27, 161, 207, 1033, 1051, 1244, 1967
MboI GATC 7 cut(s) 25, 159, 205, 1031, 1049, 1242, 1965
MboII GAAGA 8 cut(s) 849, 1134, 1354, 1840, 1855, 1915, 2012, 2089
MflI RGATCY 4 cut(s) 159, 205, 1031, 1049
MhlI GDGCHC 2 cut(s) 965, 1205
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 175, 490, 1826
MmeI TCCRAC 3 cut(s) 449, 524, 777
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 2 cut(s) 1237, 1793
MroXI GAANNNNTTC 1 cut(s) 1977
MscI TGGCCA 1 cut(s) 5
MseI TTAA 9 cut(s) 114, 1269, 1371, 1407, 1572, 1641, 1749, 1758, 1778
MslI CAYNNNNRTG 3 cut(s) 375, 1059, 1995
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 23, 2036
MspI CCGG 1 cut(s) 407
MspR9I CCNGG 7 cut(s) 80, 723, 741, 749, 1117, 1466, 1743
Mva1269I GAATGC 1 cut(s) 235
MvaI CCWGG 7 cut(s) 80, 723, 741, 749, 1117, 1466, 1743
MvnI CGCG 3 cut(s) 23, 1069, 1083
MwoI GCNNNNNNNGC 7 cut(s) 11, 20, 29, 1091, 1788, 1991, 2042
NcoI CCATGG 1 cut(s) 370
NdeI CATATG 2 cut(s) 391, 703
NdeII GATC 7 cut(s) 25, 159, 205, 1031, 1049, 1242, 1965
NlaIII CATG 8 cut(s) 205, 374, 928, 1058, 1089, 1457, 1791, 1994
NlaIV GGNNCC 9 cut(s) 207, 415, 732, 753, 1188, 1257, 1560, 1740, 1953
NmuCI GTSAC 2 cut(s) 178, 1702
NruI TCGCGA 1 cut(s) 1069
NsiI ATGCAT 2 cut(s) 1237, 1793
NspI RCATGY 2 cut(s) 1791, 1994
PaeI GCATGC 1 cut(s) 1994
PaeR7I CTCGAG 1 cut(s) 295
PaqCI CACCTGC 1 cut(s) 1243
PasI CCCWGGG 1 cut(s) 1116
PceI AGGCCT 2 cut(s) 1542, 1746
PctI GAATGC 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 1977
PfeI GAWTC 7 cut(s) 62, 134, 895, 1064, 1210, 1579, 1973
PflMI CCANNNNNTGG 2 cut(s) 506, 761
PfoI TCCNGGA 1 cut(s) 739
PkrI GCNGC 7 cut(s) 34, 148, 532, 825, 1459, 1596, 2035
PleI GAGTC 3 cut(s) 175, 490, 1825
PpsI GAGTC 3 cut(s) 175, 490, 1825
PpuMI RGGWCCY 2 cut(s) 751, 1187
PsiI TTATAA 1 cut(s) 980
Psp124BI GAGCTC 1 cut(s) 1205
Psp5II RGGWCCY 2 cut(s) 751, 1187
Psp6I CCWGG 7 cut(s) 78, 721, 739, 747, 1115, 1464, 1741
PspFI CCCAGC 1 cut(s) 521
PspGI CCWGG 7 cut(s) 78, 721, 739, 747, 1115, 1464, 1741
PspN4I GGNNCC 9 cut(s) 207, 415, 732, 753, 1188, 1257, 1560, 1740, 1953
PspPI GGNCC 7 cut(s) 395, 455, 509, 751, 1187, 1422, 1559
PspPPI RGGWCCY 2 cut(s) 751, 1187
PstNI CAGNNNCTG 1 cut(s) 493
PsuI RGATCY 4 cut(s) 159, 205, 1031, 1049
PvuII CAGCTG 1 cut(s) 2036
RruI TCGCGA 1 cut(s) 1069
RsaI GTAC 4 cut(s) 844, 992, 1109, 1589
RsaNI GTAC 4 cut(s) 843, 991, 1108, 1588
RseI CAYNNNNRTG 3 cut(s) 375, 1059, 1995
SacI GAGCTC 1 cut(s) 1205
SacII CCGCGG 1 cut(s) 24
SaqAI TTAA 9 cut(s) 114, 1269, 1371, 1407, 1572, 1641, 1749, 1758, 1778
SatI GCNGC 7 cut(s) 33, 147, 531, 824, 1458, 1595, 2034
Sau3AI GATC 7 cut(s) 25, 159, 205, 1031, 1049, 1242, 1965
Sau96I GGNCC 7 cut(s) 395, 455, 509, 751, 1187, 1422, 1559
ScaI AGTACT 1 cut(s) 1589
SchI GAGTC 3 cut(s) 175, 490, 1826
ScrFI CCNGG 7 cut(s) 80, 723, 741, 749, 1117, 1466, 1743
SduI GDGCHC 2 cut(s) 965, 1205
SfaNI GCATC 3 cut(s) 790, 1342, 2032
SfcI CTRYAG 2 cut(s) 44, 558
Sfr274I CTCGAG 1 cut(s) 295
Sfr303I CCGCGG 1 cut(s) 24
SgrBI CCGCGG 1 cut(s) 24
SinI GGWCC 4 cut(s) 395, 509, 751, 1187
SlaI CTCGAG 1 cut(s) 295
SmiMI CAYNNNNRTG 3 cut(s) 375, 1059, 1995
SmlI CTYRAG 3 cut(s) 295, 969, 1679
SmoI CTYRAG 3 cut(s) 295, 969, 1679
SphI GCATGC 1 cut(s) 1994
SseBI AGGCCT 2 cut(s) 1542, 1746
SsiI CCGC 4 cut(s) 21, 23, 1131, 1822
SspMI CTAG 3 cut(s) 828, 1583, 2113
SstI GAGCTC 1 cut(s) 1205
StuI AGGCCT 2 cut(s) 1542, 1746
StyD4I CCNGG 7 cut(s) 78, 721, 739, 747, 1115, 1464, 1741
StyI CCWWGG 2 cut(s) 370, 941
TaaI ACNGT 9 cut(s) 10, 513, 595, 908, 1027, 1382, 1658, 1712, 2108
TaiI ACGT 1 cut(s) 781
TaqI TCGA 1 cut(s) 296
TaqII GACCGA 2 cut(s) 1323, 1504
TatI WGTACW 3 cut(s) 842, 1107, 1587
TfiI GAWTC 7 cut(s) 62, 134, 895, 1064, 1210, 1579, 1973
Tru1I TTAA 9 cut(s) 114, 1269, 1371, 1407, 1572, 1641, 1749, 1758, 1778
Tru9I TTAA 9 cut(s) 114, 1269, 1371, 1407, 1572, 1641, 1749, 1758, 1778
TscAI CASTG 6 cut(s) 511, 600, 1081, 1387, 1531, 1992
TseFI GTSAC 2 cut(s) 178, 1702
TseI GCWGC 7 cut(s) 32, 146, 530, 823, 1457, 1594, 2033
Tsp45I GTSAC 2 cut(s) 178, 1702
TspDTI ATGAA 8 cut(s) 190, 690, 913, 1188, 1354, 1385, 1442, 1932
TspGWI ACGGA 4 cut(s) 166, 174, 198, 780
TspRI CASTG 6 cut(s) 511, 600, 1081, 1387, 1531, 1992
Van91I CCANNNNNTGG 2 cut(s) 506, 761
VpaK11BI GGWCC 4 cut(s) 395, 509, 751, 1187
XapI RAATTY 5 cut(s) 84, 913, 1358, 1761, 1939
XbaI TCTAGA 1 cut(s) 1582
XceI RCATGY 2 cut(s) 1791, 1994
XcmI CCANNNNNNNNNTGG 1 cut(s) 374
XhoI CTCGAG 1 cut(s) 295
XmiI GTMKAC 1 cut(s) 515
XmnI GAANNNNTTC 1 cut(s) 1977
XspI CTAG 3 cut(s) 828, 1583, 2113
ZrmI AGTACT 1 cut(s) 1589
Zsp2I ATGCAT 2 cut(s) 1237, 1793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.