FvH4_3g45840

YTH domain family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001378
Physical Location & Seq
Forward (+)
38016374 .. 38020905
4532 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g45840.t2

Sequence Viewer

Length: 2319 bp
ATGAACAAAACCCTCTTTTTCCAAAAACCCAAACCCTTGGCGGCTGTTAGACCCGTTGTCTCTCTCGCTCCAAGTCTTCTCTCTCTCTCATCCGTTTTGCTAAACCCCCCAATTTGGGATTTTAGGGATTTGAGGCTGACTTTGGAGTTTCGAGCGAGGGCTTCTAGAAGATCCAGCTACCAATTCTCGGCCATGGCCACCGTTGCTCCTCCCGCAGATCAAGCAGCAGATTTGCTCCAGAAGCTGTCAATAGATTCGCAGACCAAGACTCTGGAAATTCCAGAGCCTACAAAGAAGCCTTCTGTTAACCAATACGGGTCTATTGATTCTGGCAATGCTGTGAATGGTCAGATCCCATCTGATCGCTCTGTGACTCCACTGTCGACTGACTTCACGGATCAATCTTTCTCCTATCTCCCAAATGGTTATCCATCTGCAGCCTATTACTATGGAGGCTATGATGGGGCTGGCGACTGGGATGAGTACTCGAGATATGTGAATCCAGAGGGAGTAGATATGACTTCGGGGGTTTATGGAGATAACGGGTCTCTTATGTACCACCATGGTTATGGGTATGCACCGTATGGGCCTTATTCACCAGCAGCTTCCCCTGTTCCAACTATGGGAAATGATGGTCAGTTATACGGGCCTCAACATTACCAGTACCCGCCCTATTTCCAGCCGCTGACTCCAACCAGTGGGCCATACACTCCCAGTCCTGTAGCCCCTCAGAATGAGGTATCAACTTCCTTAGGTGCTGACCAAAAGCCTCTGCCAGTGGAAACAGCTAATGGAATTTCTAATGGCATTGCAAATAATGCAAGTGTGAAAGGAAGTAATGGTTCAGCTCCCCTATCGACGTATCAAACCACGTCTTTCAACTCCAATGGTTCATATGGACGAGGTGCTTTGCCTGCACGTGTTCCTACTCCTGGTTACCAGGACCCAAGATATGGTTACGACACAGTACGGTCTCCAATCCCCTGGTTAGATGCCCCACTTTTTTCAGATGGGCAGCATAGACCTATGGCAAATACACCCATTACTTCAAACTCGAATGGCAATAGAATTCCATCTTTGAGGAACCAGAACTACCGTCCAAATTCGCACTACATGGGTTTGCACCACCCCAGACCGCTGTCAGGAATAGGTACAGCTCAAGGGTTTATGAATAGCAGCATGTACCCAAGCAAGCTATTTGGCCAGTATGGAAACACAGTCAGATCTGGTCTGGGATATGGGTCTCATGGTTATGATTCGCGAACCAGTGGACGCACATGGCTGGCTGTTGACAACAAGTATAAACAACCCAGGGGGCGTAATGGTGGTTACTATGGATATGGTAATGAGAACTCGGACGGTTTAAATGAGCTCAACAGAGGACCTCGGGCAAGAGGCTCAAAGAACCAAAAGAGTTTTACCCCTAGTGCATTAGCTATCAAGGGGCAGAATGTGCCAGCAAGTCTTAGTCATGATGAGGAAAAGGATACAAGTACTGTTCCAGACAGAGAGCAATACAATAAAGCAGATTTTCCAGAGGATTATACTGATGCCAAATTCTTTATTATCAAGTCATATAGTGAGGATGATGTCCATAAGAGCATCAAGTATAATGTTTGGGCCAGTACACCAAATGGCAACAAGAAGCTTCATGCAGCATACCAGGAGGCTCAGGAGAAGACTGGTGGCTGCCCTGTATTTCTTTTTTTCTCGGTCAATACCAGTGGGCAATTTGTCGGCCTCGCTGAGATGTTGGGGCCTGTTGATTTCAACAAGAATTTGGAGTACTGGCAGCAAGACAAATGGAATGGCTGTTTCTCTGTCAAGTGGCATTTTGTTAAAGACGTTCCTAACAGTTTGTTGAAGCATATTACTCTTGAAAATAATGAGAACAAACCTGTGACTAATAGTAGGGACACTCAGGAGGTTAAGTTGGAACCAGGGCTTAAAATGATCAAAATATTCAAGGAGCATTCAAGTAAAACATGCATTTTGGATGACTTTGGATTTTATGAGTCCCGCCAGAAGACAATCCAGGAGAAGAAGGCCAAGCAACAGCAGCAGTTTCAGAAGCAGGTATGGGAAGGAAAAACTCTTGATGAGAAGAAAGAGGTAGTGGCAAATGGACAAGTGAAAACACAAAATTCATCGGATGTTCCCTCTGAGATAAACAAGGAATCTATCCCAACAGTGCATGCCAGCGAGGAGCTGAAACTTGCAGAAAATGGATCAATTGCGACTGGCGAAGCCCCAAAGGGTGCTAAACCGGTTGTGGCTGAGAAGAGGGCTGTAGGAAATGGGGTTGCAAACGGTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

773

Amino Acids

84.85

Weight (kDa)

8.53

Isoelectric Point (pI)

33.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 346 - 484 4.9e-49 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 379
Acc36I ACCTGC 1 cut(s) 2065
AccB7I CCANNNNNTGG 2 cut(s) 698, 953
AccI GTMKAC 1 cut(s) 383
AccII CGCG 1 cut(s) 1261
AciI CCGC 6 cut(s) 41, 213, 668, 683, 1136, 2020
AclWI GGATC 4 cut(s) 165, 346, 405, 2236
AcoI YGGCCR 3 cut(s) 189, 195, 1201
AcsI RAATTY 7 cut(s) 276, 795, 1068, 1102, 1556, 1777, 2143
AcvI CACGTG 1 cut(s) 920
AfaI GTAC 9 cut(s) 485, 557, 665, 969, 1153, 1184, 1495, 1627, 1787
AfiI CCNNNNNNNGG 8 cut(s) 114, 115, 187, 623, 698, 932, 953, 1142
AflIII ACRYGT 1 cut(s) 919
AgeI ACCGGT 1 cut(s) 2266
AgsI TTSAA 7 cut(s) 880, 1050, 1771, 1864, 1880, 1966, 1977
AhdI GACNNNNNGTC 1 cut(s) 56
AjiI CACGTC 1 cut(s) 873
AjnI CCWGG 7 cut(s) 931, 939, 983, 1310, 1662, 1939, 2034
Alw21I GWGCWC 1 cut(s) 1374
Alw26I GTCTC 4 cut(s) 64, 552, 978, 1248
AlwI GGATC 4 cut(s) 165, 346, 405, 2236
AlwNI CAGNNNCTG 2 cut(s) 244, 685
Ama87I CYCGRG 2 cut(s) 487, 1386
ApeKI GCWGC 9 cut(s) 224, 437, 602, 1015, 1176, 1655, 1689, 1792, 2059
ApoI RAATTY 7 cut(s) 276, 795, 1068, 1102, 1556, 1777, 2143
AsiGI ACCGGT 1 cut(s) 2266
AspS9I GGNCC 7 cut(s) 587, 647, 701, 943, 1382, 1620, 1757
AsuHPI GGTGA 1 cut(s) 588
AvaI CYCGRG 2 cut(s) 487, 1386
AvaII GGWCC 2 cut(s) 943, 1382
AxyI CCTNAGG 1 cut(s) 751
BalI TGGCCA 2 cut(s) 197, 1203
BanII GRGCYC 1 cut(s) 1374
BbrPI CACGTG 1 cut(s) 920
BbsI GAAGAC 3 cut(s) 68, 1685, 2033
Bbv12I GWGCWC 1 cut(s) 1374
BbvI GCAGC 9 cut(s) 236, 449, 614, 1027, 1188, 1667, 1676, 1804, 2071
BccI CCATC 6 cut(s) 364, 439, 455, 626, 1004, 1081
BciT130I CCWGG 7 cut(s) 933, 941, 985, 1312, 1664, 1941, 2036
BciVI GTATCC 1 cut(s) 1480
BclI TGATCA 1 cut(s) 1953
BcoDI GTCTC 4 cut(s) 64, 552, 978, 1248
BfaI CTAG 3 cut(s) 165, 1425, 2317
BfmI CTRYAG 3 cut(s) 435, 720, 2289
BfuAI ACCTGC 1 cut(s) 2065
BfuI GTATCC 1 cut(s) 1480
BglII AGATCT 1 cut(s) 1223
BmcAI AGTACT 3 cut(s) 485, 1495, 1787
Bme1390I CCNGG 7 cut(s) 933, 941, 985, 1312, 1664, 1941, 2036
Bme18I GGWCC 2 cut(s) 943, 1382
BmeRI GACNNNNNGTC 1 cut(s) 56
BmeT110I CYCGRG 2 cut(s) 487, 1386
BmgBI CACGTC 1 cut(s) 873
BmgT120I GGNCC 7 cut(s) 587, 647, 701, 943, 1382, 1620, 1757
BmiI GGNNCC 4 cut(s) 945, 1085, 1758, 1938
BmrFI CCNGG 7 cut(s) 933, 941, 985, 1312, 1664, 1941, 2036
BmrI ACTGGG 2 cut(s) 484, 708
BmsI GCATC 3 cut(s) 982, 1540, 1611
BmuI ACTGGG 2 cut(s) 484, 708
BoxI GACNNNNGTC 1 cut(s) 1138
BpiI GAAGAC 3 cut(s) 68, 1685, 2033
BpmI CTGGAG 1 cut(s) 221
Bpu10I CCTNAGC 1 cut(s) 1671
BpuEI CTTGAG 1 cut(s) 1143
BsaAI YACGTR 1 cut(s) 920
BsaI GGTCTC 3 cut(s) 552, 978, 1248
BsaJI CCNNGG 8 cut(s) 36, 192, 562, 983, 1310, 1311, 1385, 1940
BsaWI WCCGGW 1 cut(s) 2266
BsaXI ACNNNNNCTCC 4 cut(s) 190, 220, 1916, 1946
Bsc4I CCNNNNNNNGG 8 cut(s) 114, 115, 187, 623, 698, 932, 953, 1142
Bse118I RCCGGY 1 cut(s) 2266
Bse21I CCTNAGG 1 cut(s) 751
Bse3DI GCAATG 2 cut(s) 340, 807
BseBI CCWGG 7 cut(s) 933, 941, 985, 1312, 1664, 1941, 2036
BseDI CCNNGG 8 cut(s) 36, 192, 562, 983, 1310, 1311, 1385, 1940
BseGI GGATG 5 cut(s) 89, 484, 1591, 2002, 2158
BseLI CCNNNNNNNGG 8 cut(s) 114, 115, 187, 623, 698, 932, 953, 1142
BseMI GCAATG 2 cut(s) 340, 807
BseMII CTCAG 6 cut(s) 743, 1685, 1737, 1934, 2154, 2268
BseRI GAGGAG 2 cut(s) 198, 2219
BseXI GCAGC 9 cut(s) 236, 449, 614, 1027, 1188, 1667, 1676, 1804, 2071
BsgI GTGCAG 1 cut(s) 900
Bsh1236I CGCG 1 cut(s) 1261
BshTI ACCGGT 1 cut(s) 2266
BsiHKAI GWGCWC 1 cut(s) 1374
BsiHKCI CYCGRG 2 cut(s) 487, 1386
BsiSI CCGG 1 cut(s) 2267
BslFI GGGAC 2 cut(s) 1928, 2002
BslI CCNNNNNNNGG 8 cut(s) 114, 115, 187, 623, 698, 932, 953, 1142
BsmAI GTCTC 4 cut(s) 64, 552, 978, 1248
BsmFI GGGAC 2 cut(s) 1928, 2002
BsmI GAATGC 1 cut(s) 1972
Bso31I GGTCTC 3 cut(s) 552, 978, 1248
BsoBI CYCGRG 2 cut(s) 487, 1386
Bsp1286I GDGCHC 1 cut(s) 1374
Bsp143I GATC 8 cut(s) 170, 217, 351, 361, 397, 1223, 1953, 2228
Bsp19I CCATGG 2 cut(s) 192, 562
Bsp68I TCGCGA 1 cut(s) 1261
BspACI CCGC 6 cut(s) 41, 213, 668, 683, 1136, 2020
BspCNI CTCAG 6 cut(s) 742, 1684, 1738, 1933, 2155, 2269
BspFNI CGCG 1 cut(s) 1261
BspHI TCATGA 1 cut(s) 1471
BspLI GGNNCC 4 cut(s) 945, 1085, 1758, 1938
BspMAI CTGCAG 1 cut(s) 439
BspMI ACCTGC 1 cut(s) 2065
BspPI GGATC 4 cut(s) 165, 346, 405, 2236
BspTNI GGTCTC 3 cut(s) 552, 978, 1248
BsrDI GCAATG 2 cut(s) 340, 807
BsrFI RCCGGY 1 cut(s) 2266
BssAI RCCGGY 1 cut(s) 2266
BssECI CCNNGG 8 cut(s) 36, 192, 562, 983, 1310, 1311, 1385, 1940
BssMI GATC 8 cut(s) 170, 217, 351, 361, 397, 1223, 1953, 2228
BssT1I CCWWGG 3 cut(s) 36, 192, 562
Bst2UI CCWGG 7 cut(s) 933, 941, 985, 1312, 1664, 1941, 2036
Bst6I CTCTTC 1 cut(s) 2276
BstAPI GCANNNNNTGC 2 cut(s) 818, 1453
BstBAI YACGTR 1 cut(s) 920
BstC8I GCNNGC 7 cut(s) 469, 915, 1193, 1284, 1458, 2196, 2200
BstDEI CTNAG 8 cut(s) 729, 751, 1466, 1671, 1746, 1920, 2163, 2277
BstDSI CCRYGG 2 cut(s) 192, 562
BstEII GGTNACC 1 cut(s) 935
BstF5I GGATG 5 cut(s) 89, 484, 1591, 2002, 2158
BstFNI CGCG 1 cut(s) 1261
BstKTI GATC 8 cut(s) 173, 220, 354, 364, 400, 1226, 1956, 2231
BstMAI GTCTC 4 cut(s) 64, 552, 978, 1248
BstMBI GATC 8 cut(s) 170, 217, 351, 361, 397, 1223, 1953, 2228
BstMWI GCNNNNNNNGC 8 cut(s) 203, 212, 221, 241, 818, 914, 1453, 2059
BstNI CCWGG 7 cut(s) 933, 941, 985, 1312, 1664, 1941, 2036
BstNSI RCATGY 3 cut(s) 1183, 1989, 2198
BstPAI GACNNNNGTC 1 cut(s) 1138
BstPI GGTNACC 1 cut(s) 935
BstSCI CCNGG 7 cut(s) 931, 939, 983, 1310, 1662, 1939, 2034
BstSFI CTRYAG 3 cut(s) 435, 720, 2289
BstUI CGCG 1 cut(s) 1261
BstV1I GCAGC 9 cut(s) 236, 449, 614, 1027, 1188, 1667, 1676, 1804, 2071
BstV2I GAAGAC 3 cut(s) 68, 1685, 2033
BstX2I RGATCY 3 cut(s) 170, 351, 1223
BstXI CCANNNNNNTGG 4 cut(s) 37, 271, 569, 984
BstYI RGATCY 3 cut(s) 170, 351, 1223
Bsu36I CCTNAGG 1 cut(s) 751
BsuI GTATCC 1 cut(s) 1480
BtgI CCRYGG 2 cut(s) 192, 562
BtrI CACGTC 1 cut(s) 873
BtsCI GGATG 5 cut(s) 89, 484, 1591, 2002, 2158
BtsIMutI CAGTG 6 cut(s) 377, 703, 783, 1273, 1729, 2196
BtuMI TCGCGA 1 cut(s) 1261
BveI ACCTGC 1 cut(s) 2065
Cac8I GCNNGC 7 cut(s) 469, 915, 1193, 1284, 1458, 2196, 2200
CaiI CAGNNNCTG 2 cut(s) 244, 685
CciI TCATGA 1 cut(s) 1471
Cfr10I RCCGGY 1 cut(s) 2266
Cfr13I GGNCC 7 cut(s) 587, 647, 701, 943, 1382, 1620, 1757
CseI GACGC 1 cut(s) 1281
Csp6I GTAC 9 cut(s) 484, 556, 664, 968, 1152, 1183, 1494, 1626, 1786
CspAI ACCGGT 1 cut(s) 2266
CspCI CAANNNNNGTGG 2 cut(s) 1705, 1740
CviQI GTAC 9 cut(s) 484, 556, 664, 968, 1152, 1183, 1494, 1626, 1786
DdeI CTNAG 8 cut(s) 729, 751, 1466, 1671, 1746, 1920, 2163, 2277
DpnI GATC 8 cut(s) 172, 219, 353, 363, 399, 1225, 1955, 2230
DpnII GATC 8 cut(s) 170, 217, 351, 361, 397, 1223, 1953, 2228
DraI TTTAAA 1 cut(s) 1365
DrdI GACNNNNNNGTC 1 cut(s) 379
DriI GACNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 379
EaeI YGGCCR 3 cut(s) 189, 195, 1201
Eam1104I CTCTTC 1 cut(s) 2276
Eam1105I GACNNNNNGTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 2276
Ecl136II GAGCTC 1 cut(s) 1372
Eco130I CCWWGG 3 cut(s) 36, 192, 562
Eco24I GRGCYC 1 cut(s) 1374
Eco31I GGTCTC 3 cut(s) 552, 978, 1248
Eco47I GGWCC 2 cut(s) 943, 1382
Eco53kI GAGCTC 1 cut(s) 1372
Eco72I CACGTG 1 cut(s) 920
Eco81I CCTNAGG 1 cut(s) 751
Eco88I CYCGRG 2 cut(s) 487, 1386
Eco91I GGTNACC 1 cut(s) 935
EcoICRI GAGCTC 1 cut(s) 1372
EcoO109I RGGNCCY 3 cut(s) 943, 1382, 1757
EcoO65I GGTNACC 1 cut(s) 935
EcoRI GAATTC 1 cut(s) 1068
EcoRII CCWGG 7 cut(s) 931, 939, 983, 1310, 1662, 1939, 2034
EcoT14I CCWWGG 3 cut(s) 36, 192, 562
EcoT22I ATGCAT 1 cut(s) 1991
EcoT38I GRGCYC 1 cut(s) 1374
ErhI CCWWGG 3 cut(s) 36, 192, 562
FaqI GGGAC 2 cut(s) 1928, 2002
FauI CCCGC 3 cut(s) 220, 675, 2027
FauNDI CATATG 1 cut(s) 895
FbaI TGATCA 1 cut(s) 1953
FblI GTMKAC 1 cut(s) 383
FokI GGATG 5 cut(s) 76, 491, 1598, 2009, 2165
FriOI GRGCYC 1 cut(s) 1374
FspBI CTAG 3 cut(s) 165, 1425, 2317
GsuI CTGGAG 1 cut(s) 221
HapII CCGG 1 cut(s) 2267
HgaI GACGC 1 cut(s) 1281
HincII GTYRAC 3 cut(s) 307, 384, 1291
HindII GTYRAC 3 cut(s) 307, 384, 1291
HindIII AAGCTT 1 cut(s) 1646
HinfI GANTC 9 cut(s) 254, 268, 326, 373, 499, 688, 1256, 2015, 2177
HpaI GTTAAC 1 cut(s) 307
HpaII CCGG 1 cut(s) 2267
HphI GGTGA 1 cut(s) 588
Hpy166II GTNNAC 5 cut(s) 307, 384, 1271, 1291, 1628
Hpy188I TCNGA 9 cut(s) 351, 361, 732, 1009, 1223, 1357, 2070, 2152, 2164
Hpy8I GTNNAC 5 cut(s) 307, 384, 1271, 1291, 1628
Hpy99I CGWCG 1 cut(s) 862
HpyAV CCTTC 3 cut(s) 309, 2038, 2078
HpyCH4IV ACGT 4 cut(s) 860, 872, 919, 1845
HpyF10VI GCNNNNNNNGC 8 cut(s) 203, 212, 221, 241, 818, 914, 1453, 2059
HpyF3I CTNAG 8 cut(s) 729, 751, 1466, 1671, 1746, 1920, 2163, 2277
HpySE526I ACGT 4 cut(s) 860, 872, 919, 1845
Ksp22I TGATCA 1 cut(s) 1953
KspAI GTTAAC 1 cut(s) 307
Kzo9I GATC 8 cut(s) 170, 217, 351, 361, 397, 1223, 1953, 2228
LmnI GCTCC 6 cut(s) 73, 211, 240, 853, 1969, 2206
Lsp1109I GCAGC 9 cut(s) 236, 449, 614, 1027, 1188, 1667, 1676, 1804, 2071
LweI GCATC 3 cut(s) 982, 1540, 1611
MaeI CTAG 3 cut(s) 165, 1425, 2317
MaeII ACGT 4 cut(s) 860, 872, 919, 1845
MaeIII GTNAC 5 cut(s) 370, 935, 956, 1328, 1900
MalI GATC 8 cut(s) 172, 219, 353, 363, 399, 1225, 1955, 2230
MboI GATC 8 cut(s) 170, 217, 351, 361, 397, 1223, 1953, 2228
MboII GAAGA 7 cut(s) 68, 180, 1690, 2038, 2053, 2116, 2293
MfeI CAATTG 1 cut(s) 2232
MflI RGATCY 3 cut(s) 170, 351, 1223
MhlI GDGCHC 1 cut(s) 1374
MlsI TGGCCA 2 cut(s) 197, 1203
MluNI TGGCCA 2 cut(s) 197, 1203
MlyI GAGTC 4 cut(s) 262, 367, 682, 2024
MmeI TCCRAC 3 cut(s) 641, 716, 1914
Mox20I TGGCCA 2 cut(s) 197, 1203
Mph1103I ATGCAT 1 cut(s) 1991
MscI TGGCCA 2 cut(s) 197, 1203
MseI TTAA 5 cut(s) 306, 1364, 1839, 1929, 1947
MslI CAYNNNNRTG 2 cut(s) 567, 1251
Msp20I TGGCCA 2 cut(s) 197, 1203
MspA1I CMGCKG 2 cut(s) 685, 1138
MspI CCGG 1 cut(s) 2267
MspR9I CCNGG 7 cut(s) 933, 941, 985, 1312, 1664, 1941, 2036
MunI CAATTG 1 cut(s) 2232
Mva1269I GAATGC 1 cut(s) 1972
MvaI CCWGG 7 cut(s) 933, 941, 985, 1312, 1664, 1941, 2036
MvnI CGCG 1 cut(s) 1261
MwoI GCNNNNNNNGC 8 cut(s) 203, 212, 221, 241, 818, 914, 1453, 2059
NcoI CCATGG 2 cut(s) 192, 562
NdeI CATATG 1 cut(s) 895
NdeII GATC 8 cut(s) 170, 217, 351, 361, 397, 1223, 1953, 2228
NlaIV GGNNCC 4 cut(s) 945, 1085, 1758, 1938
NmeAIII GCCGAG 1 cut(s) 167
NmuCI GTSAC 2 cut(s) 370, 1900
NruI TCGCGA 1 cut(s) 1261
NsiI ATGCAT 1 cut(s) 1991
NspI RCATGY 3 cut(s) 1183, 1989, 2198
PaeI GCATGC 1 cut(s) 2198
PaeR7I CTCGAG 1 cut(s) 487
PagI TCATGA 1 cut(s) 1471
PasI CCCWGGG 1 cut(s) 1311
PctI GAATGC 1 cut(s) 1972
PfeI GAWTC 5 cut(s) 254, 326, 499, 1256, 2177
PflMI CCANNNNNTGG 2 cut(s) 698, 953
PfoI TCCNGGA 1 cut(s) 2034
PinAI ACCGGT 1 cut(s) 2266
PleI GAGTC 4 cut(s) 262, 367, 682, 2023
PmaCI CACGTG 1 cut(s) 920
PmlI CACGTG 1 cut(s) 920
PpsI GAGTC 4 cut(s) 262, 367, 682, 2023
Ppu21I YACGTR 1 cut(s) 920
PpuMI RGGWCCY 2 cut(s) 943, 1382
PshAI GACNNNNGTC 1 cut(s) 1138
Psp124BI GAGCTC 1 cut(s) 1374
Psp5II RGGWCCY 2 cut(s) 943, 1382
Psp6I CCWGG 7 cut(s) 931, 939, 983, 1310, 1662, 1939, 2034
PspCI CACGTG 1 cut(s) 920
PspEI GGTNACC 1 cut(s) 935
PspGI CCWGG 7 cut(s) 931, 939, 983, 1310, 1662, 1939, 2034
PspN4I GGNNCC 4 cut(s) 945, 1085, 1758, 1938
PspPI GGNCC 7 cut(s) 587, 647, 701, 943, 1382, 1620, 1757
PspPPI RGGWCCY 2 cut(s) 943, 1382
PsrI GAACNNNNNNTAC 2 cut(s) 1076, 1108
PstI CTGCAG 1 cut(s) 439
PstNI CAGNNNCTG 2 cut(s) 244, 685
PsuI RGATCY 3 cut(s) 170, 351, 1223
RruI TCGCGA 1 cut(s) 1261
RsaI GTAC 9 cut(s) 485, 557, 665, 969, 1153, 1184, 1495, 1627, 1787
RsaNI GTAC 9 cut(s) 484, 556, 664, 968, 1152, 1183, 1494, 1626, 1786
RseI CAYNNNNRTG 2 cut(s) 567, 1251
SacI GAGCTC 1 cut(s) 1374
SalI GTCGAC 1 cut(s) 382
SaqAI TTAA 5 cut(s) 306, 1364, 1839, 1929, 1947
Sau3AI GATC 8 cut(s) 170, 217, 351, 361, 397, 1223, 1953, 2228
Sau96I GGNCC 7 cut(s) 587, 647, 701, 943, 1382, 1620, 1757
ScaI AGTACT 3 cut(s) 485, 1495, 1787
SchI GAGTC 4 cut(s) 262, 367, 682, 2024
ScrFI CCNGG 7 cut(s) 933, 941, 985, 1312, 1664, 1941, 2036
SduI GDGCHC 1 cut(s) 1374
SfaNI GCATC 3 cut(s) 982, 1540, 1611
SfcI CTRYAG 3 cut(s) 435, 720, 2289
Sfr274I CTCGAG 1 cut(s) 487
SinI GGWCC 2 cut(s) 943, 1382
SlaI CTCGAG 1 cut(s) 487
SmiMI CAYNNNNRTG 2 cut(s) 567, 1251
SmlI CTYRAG 2 cut(s) 487, 1158
SmoI CTYRAG 2 cut(s) 487, 1158
SphI GCATGC 1 cut(s) 2198
SsiI CCGC 6 cut(s) 41, 213, 668, 683, 1136, 2020
SspI AATATT 1 cut(s) 1962
SspMI CTAG 3 cut(s) 165, 1425, 2317
SstI GAGCTC 1 cut(s) 1374
StyD4I CCNGG 7 cut(s) 931, 939, 983, 1310, 1662, 1939, 2034
StyI CCWWGG 3 cut(s) 36, 192, 562
TaiI ACGT 4 cut(s) 863, 875, 922, 1848
TaqI TCGA 5 cut(s) 151, 383, 488, 857, 1055
TaqII GACCGA 1 cut(s) 1702
TatI WGTACW 4 cut(s) 483, 1493, 1625, 1785
TauI GCSGC 2 cut(s) 44, 685
TfiI GAWTC 5 cut(s) 254, 326, 499, 1256, 2177
Tru1I TTAA 5 cut(s) 306, 1364, 1839, 1929, 1947
Tru9I TTAA 5 cut(s) 306, 1364, 1839, 1929, 1947
TscAI CASTG 6 cut(s) 384, 703, 783, 1273, 1729, 2196
TseFI GTSAC 2 cut(s) 370, 1900
TseI GCWGC 9 cut(s) 224, 437, 602, 1015, 1176, 1655, 1689, 1792, 2059
Tsp45I GTSAC 2 cut(s) 370, 1900
TspDTI ATGAA 5 cut(s) 17, 882, 1184, 1640, 2136
TspGWI ACGGA 2 cut(s) 82, 410
TspRI CASTG 6 cut(s) 384, 703, 783, 1273, 1729, 2196
Van91I CCANNNNNTGG 2 cut(s) 698, 953
VpaK11BI GGWCC 2 cut(s) 943, 1382
XapI RAATTY 7 cut(s) 276, 795, 1068, 1102, 1556, 1777, 2143
XbaI TCTAGA 1 cut(s) 164
XceI RCATGY 3 cut(s) 1183, 1989, 2198
XcmI CCANNNNNNNNNTGG 1 cut(s) 566
XhoI CTCGAG 1 cut(s) 487
XmiI GTMKAC 1 cut(s) 383
XspI CTAG 3 cut(s) 165, 1425, 2317
ZrmI AGTACT 3 cut(s) 485, 1495, 1787
Zsp2I ATGCAT 1 cut(s) 1991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.