pycom03g00230

YTH domain family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0001378
Physical Location & Seq
Reverse (-)
218941 .. 220555
1615 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g00230.2

Sequence Viewer

Length: 963 bp
ATGTGTTCAAATGGACTGGGTAAACCAATGACTGGAAATACAGTCAACAGAACTCCATCTTCCAAGAATCAGACTTCCCGATCAAATTCTCAATTCATGGGTTTGCACCACACGAGGATGGGGTACGGTATGGATACAGCTAACGGACTTGTGAATGGAATGTATACCAATGAATTGTATGGTCAGTATTGGGACCCAATTAGCCTTGGTATGGGATTTGGAGTCAATGGTTTTGGTATGCATAGAAATGGAAGTGGGTGGACAGCTCTTCAAAACAAGTATAAAACCAGCGGGCAAGGCAGTTCCTTTCGCTTTGGTAACCACGACTTAGAAGGCTTGGATGAGTTGAACAAGGGACCTAGAGGTAAAAGTTCAAGAAATCAAAAGGGAAATTCACCTGATGCTGTAGCAGTTAAGGGGAGTAACACACCGCTGAATAAAGCTGATGATGAGAAGGATGCAATTAGCATAGTGGCAGAGCAGGAGCAGTACATCGGGACAGATATCTGTGATCATTATGCTGATGCTAAGTTCTTTGTTATTAAGTCATATAGTGAGGATGATGTCCATAAGTGTGTCAAGTATAATGTTTGGGCCAGCACACCAAATGGAAACAATAAGCTTCATGCGGCATACCAGGAGGCTCAGGAGAAATCAGGTGGCTGCCCTGTGTTTCTGTATTTCTCGGTGAATGCCAGTGGCCAATTTGTTGGCATAGCAGAGATGGTGGGGCTGGTAGATTTTAACAAGAATGTGGAATATTGGCAACAAGACAAGTGGACTGGCTGTTTTCCAGTTAAGTGGCACATTGTAAAGGATGTACCCAACAGTTTGCTAAAGCACATTATCCTAGAGAACAATGAAAACAAACCTGTCGCTAACAGCGGGGACACTCAAGAGGTCAAGCCAGAGCAGGGGCTTAGAATGATCAAGATCTTGGTCCATCAAGGATCATTCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

321

Amino Acids

35.38

Weight (kDa)

7.14

Isoelectric Point (pI)

26.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 32
AccI GTMKAC 1 cut(s) 164
AciI CCGC 4 cut(s) 291, 431, 629, 885
AclWI GGATC 1 cut(s) 958
AcoI YGGCCR 1 cut(s) 700
AcsI RAATTY 2 cut(s) 85, 391
AfaI GTAC 3 cut(s) 125, 491, 822
AfiI CCNNNNNNNGG 3 cut(s) 32, 211, 914
AgsI TTSAA 4 cut(s) 9, 272, 349, 375
AjnI CCWGG 1 cut(s) 636
AluBI AGCT 4 cut(s) 140, 266, 443, 622
AluI AGCT 4 cut(s) 140, 266, 443, 622
AlwI GGATC 1 cut(s) 958
AoxI GGCC 2 cut(s) 594, 700
ApeKI GCWGC 1 cut(s) 663
ApoI RAATTY 2 cut(s) 85, 391
AspS9I GGNCC 4 cut(s) 193, 356, 594, 940
AsuHPI GGTGA 2 cut(s) 387, 700
AvaII GGWCC 3 cut(s) 193, 356, 940
BalI TGGCCA 1 cut(s) 702
BauI CACGAG 1 cut(s) 112
BbvI GCAGC 1 cut(s) 650
BccI CCATC 4 cut(s) 64, 112, 718, 951
BciT130I CCWGG 1 cut(s) 638
BciVI GTATCC 1 cut(s) 127
BclI TGATCA 2 cut(s) 511, 927
BfaI CTAG 2 cut(s) 360, 851
BfmI CTRYAG 1 cut(s) 405
BfuI GTATCC 1 cut(s) 127
BglII AGATCT 1 cut(s) 933
BisI GCNGC 2 cut(s) 630, 664
BlsI GCNGC 2 cut(s) 631, 665
Bme1390I CCNGG 1 cut(s) 638
Bme18I GGWCC 3 cut(s) 193, 356, 940
BmgT120I GGNCC 4 cut(s) 193, 356, 594, 940
BmiI GGNNCC 3 cut(s) 194, 195, 357
BmrFI CCNGG 1 cut(s) 638
BmrI ACTGGG 1 cut(s) 26
BmsI GCATC 3 cut(s) 391, 448, 514
BmuI ACTGGG 1 cut(s) 26
Bpu10I CCTNAGC 1 cut(s) 645
BpuEI CTTGAG 1 cut(s) 879
BsaBI GATNNNNATC 1 cut(s) 932
BsaJI CCNNGG 1 cut(s) 205
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 211, 914
Bse1I ACTGG 6 cut(s) 21, 37, 696, 787, 794, 958
Bse8I GATNNNNATC 1 cut(s) 932
BseBI CCWGG 1 cut(s) 638
BseDI CCNNGG 1 cut(s) 205
BseGI GGATG 5 cut(s) 123, 346, 463, 565, 823
BseJI GATNNNNATC 1 cut(s) 932
BseLI CCNNNNNNNGG 3 cut(s) 32, 211, 914
BseMII CTCAG 1 cut(s) 659
BseNI ACTGG 6 cut(s) 21, 37, 696, 787, 794, 958
BseXI GCAGC 1 cut(s) 650
BshFI GGCC 2 cut(s) 596, 702
BslFI GGGAC 4 cut(s) 206, 369, 511, 902
BslI CCNNNNNNNGG 3 cut(s) 32, 211, 914
BsmFI GGGAC 4 cut(s) 206, 369, 511, 902
BsmI GAATGC 1 cut(s) 697
BsnI GGCC 2 cut(s) 596, 702
Bsp143I GATC 5 cut(s) 80, 511, 927, 933, 950
BspACI CCGC 4 cut(s) 291, 431, 629, 885
BspANI GGCC 2 cut(s) 596, 702
BspCNI CTCAG 1 cut(s) 658
BspLI GGNNCC 3 cut(s) 194, 195, 357
BspPI GGATC 1 cut(s) 958
BspQI GCTCTTC 1 cut(s) 273
BsrI ACTGG 6 cut(s) 21, 37, 696, 787, 794, 958
BssECI CCNNGG 1 cut(s) 205
BssMI GATC 5 cut(s) 80, 511, 927, 933, 950
BssNAI GTATAC 1 cut(s) 165
BssSI CACGAG 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 205
Bst1107I GTATAC 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 112
Bst2UI CCWGG 1 cut(s) 638
Bst4CI ACNGT 3 cut(s) 43, 128, 830
Bst6I CTCTTC 1 cut(s) 273
BstC8I GCNNGC 2 cut(s) 293, 598
BstDEI CTNAG 4 cut(s) 328, 528, 645, 920
BstEII GGTNACC 1 cut(s) 317
BstF5I GGATG 5 cut(s) 123, 346, 463, 565, 823
BstKTI GATC 5 cut(s) 83, 514, 930, 936, 953
BstMBI GATC 5 cut(s) 80, 511, 927, 933, 950
BstMWI GCNNNNNNNGC 1 cut(s) 297
BstNI CCWGG 1 cut(s) 638
BstPI GGTNACC 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 636
BstSFI CTRYAG 1 cut(s) 405
BstV1I GCAGC 1 cut(s) 650
BstX2I RGATCY 1 cut(s) 933
BstXI CCANNNNNNTGG 2 cut(s) 710, 801
BstYI RGATCY 1 cut(s) 933
BstZ17I GTATAC 1 cut(s) 165
BsuI GTATCC 1 cut(s) 127
BsuRI GGCC 2 cut(s) 596, 702
BtsCI GGATG 5 cut(s) 123, 346, 463, 565, 823
BtsIMutI CAGTG 1 cut(s) 703
Cac8I GCNNGC 2 cut(s) 293, 598
Cfr13I GGNCC 4 cut(s) 193, 356, 594, 940
Csp6I GTAC 3 cut(s) 124, 490, 821
CspCI CAANNNNNGTGG 2 cut(s) 758, 793
CviAII CATG 2 cut(s) 97, 626
CviQI GTAC 3 cut(s) 124, 490, 821
DdeI CTNAG 4 cut(s) 328, 528, 645, 920
DpnI GATC 5 cut(s) 82, 513, 929, 935, 952
DpnII GATC 5 cut(s) 80, 511, 927, 933, 950
EaeI YGGCCR 1 cut(s) 700
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco130I CCWWGG 1 cut(s) 205
Eco32I GATATC 1 cut(s) 505
Eco47I GGWCC 3 cut(s) 193, 356, 940
Eco91I GGTNACC 1 cut(s) 317
EcoO109I RGGNCCY 2 cut(s) 193, 356
EcoO65I GGTNACC 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 636
EcoRV GATATC 1 cut(s) 505
EcoT14I CCWWGG 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 243
ErhI CCWWGG 1 cut(s) 205
FaeI CATG 2 cut(s) 100, 629
FaqI GGGAC 4 cut(s) 206, 369, 511, 902
FatI CATG 2 cut(s) 96, 625
FauI CCCGC 2 cut(s) 284, 878
FbaI TGATCA 2 cut(s) 511, 927
FblI GTMKAC 1 cut(s) 164
Fnu4HI GCNGC 2 cut(s) 630, 664
FokI GGATG 5 cut(s) 130, 353, 470, 572, 830
Fsp4HI GCNGC 2 cut(s) 630, 664
FspBI CTAG 2 cut(s) 360, 851
GluI GCNGC 2 cut(s) 630, 664
HaeIII GGCC 2 cut(s) 596, 702
Hin1II CATG 2 cut(s) 100, 629
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HindIII AAGCTT 1 cut(s) 620
HinfI GANTC 2 cut(s) 67, 222
HphI GGTGA 2 cut(s) 387, 700
Hpy166II GTNNAC 5 cut(s) 23, 46, 165, 261, 780
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 6 cut(s) 78, 375, 496, 647, 896, 931
Hpy8I GTNNAC 5 cut(s) 23, 46, 165, 261, 780
HpyAV CCTTC 2 cut(s) 326, 448
HpyCH4III ACNGT 3 cut(s) 43, 128, 830
HpyCH4V TGCA 3 cut(s) 106, 241, 461
HpyF10VI GCNNNNNNNGC 1 cut(s) 297
HpyF3I CTNAG 4 cut(s) 328, 528, 645, 920
Hsp92II CATG 2 cut(s) 100, 629
KflI GGGWCCC 1 cut(s) 193
Ksp22I TGATCA 2 cut(s) 511, 927
Kzo9I GATC 5 cut(s) 80, 511, 927, 933, 950
LguI GCTCTTC 1 cut(s) 273
LmnI GCTCC 1 cut(s) 484
Lsp1109I GCAGC 1 cut(s) 650
LweI GCATC 3 cut(s) 391, 448, 514
MaeI CTAG 2 cut(s) 360, 851
MaeIII GTNAC 2 cut(s) 317, 422
MalI GATC 5 cut(s) 82, 513, 929, 935, 952
MboI GATC 5 cut(s) 80, 511, 927, 933, 950
MboII GAAGA 2 cut(s) 51, 260
MflI RGATCY 1 cut(s) 933
MlsI TGGCCA 1 cut(s) 702
MluCI AATT 7 cut(s) 85, 92, 173, 198, 391, 462, 704
MluNI TGGCCA 1 cut(s) 702
MlyI GAGTC 1 cut(s) 231
MnlI CCTC 5 cut(s) 108, 356, 550, 634, 892
Mox20I TGGCCA 1 cut(s) 702
Mph1103I ATGCAT 1 cut(s) 243
MscI TGGCCA 1 cut(s) 702
MseI TTAA 4 cut(s) 414, 543, 744, 798
MslI CAYNNNNRTG 3 cut(s) 116, 246, 573
Msp20I TGGCCA 1 cut(s) 702
MspA1I CMGCKG 3 cut(s) 291, 433, 885
MspR9I CCNGG 1 cut(s) 638
Mva1269I GAATGC 1 cut(s) 697
MvaI CCWGG 1 cut(s) 638
MwoI GCNNNNNNNGC 1 cut(s) 297
NdeII GATC 5 cut(s) 80, 511, 927, 933, 950
NlaIII CATG 2 cut(s) 100, 629
NlaIV GGNNCC 3 cut(s) 194, 195, 357
NsiI ATGCAT 1 cut(s) 243
PciSI GCTCTTC 1 cut(s) 273
PctI GAATGC 1 cut(s) 697
PfeI GAWTC 1 cut(s) 67
PflMI CCANNNNNTGG 1 cut(s) 32
PkrI GCNGC 2 cut(s) 631, 665
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PpuMI RGGWCCY 2 cut(s) 193, 356
Psp5II RGGWCCY 2 cut(s) 193, 356
Psp6I CCWGG 1 cut(s) 636
PspEI GGTNACC 1 cut(s) 317
PspGI CCWGG 1 cut(s) 636
PspN4I GGNNCC 3 cut(s) 194, 195, 357
PspPI GGNCC 4 cut(s) 193, 356, 594, 940
PspPPI RGGWCCY 2 cut(s) 193, 356
PsuI RGATCY 1 cut(s) 933
RsaI GTAC 3 cut(s) 125, 491, 822
RsaNI GTAC 3 cut(s) 124, 490, 821
RseI CAYNNNNRTG 3 cut(s) 116, 246, 573
SapI GCTCTTC 1 cut(s) 273
SaqAI TTAA 4 cut(s) 414, 543, 744, 798
SatI GCNGC 2 cut(s) 630, 664
Sau3AI GATC 5 cut(s) 80, 511, 927, 933, 950
Sau96I GGNCC 4 cut(s) 193, 356, 594, 940
SchI GAGTC 1 cut(s) 231
ScrFI CCNGG 1 cut(s) 638
SfaNI GCATC 3 cut(s) 391, 448, 514
SfcI CTRYAG 1 cut(s) 405
SinI GGWCC 3 cut(s) 193, 356, 940
SmiMI CAYNNNNRTG 3 cut(s) 116, 246, 573
SmlI CTYRAG 1 cut(s) 894
SmoI CTYRAG 1 cut(s) 894
Sse9I AATT 7 cut(s) 85, 92, 173, 198, 391, 462, 704
SsiI CCGC 4 cut(s) 291, 431, 629, 885
SspI AATATT 1 cut(s) 761
SspMI CTAG 2 cut(s) 360, 851
StyD4I CCNGG 1 cut(s) 636
StyI CCWWGG 1 cut(s) 205
TaaI ACNGT 3 cut(s) 43, 128, 830
TasI AATT 7 cut(s) 85, 92, 173, 198, 391, 462, 704
TatI WGTACW 1 cut(s) 489
TauI GCSGC 1 cut(s) 632
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 4 cut(s) 414, 543, 744, 798
Tru9I TTAA 4 cut(s) 414, 543, 744, 798
TscAI CASTG 1 cut(s) 703
TseI GCWGC 1 cut(s) 663
TspDTI ATGAA 4 cut(s) 85, 186, 614, 876
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 1 cut(s) 703
Van91I CCANNNNNTGG 1 cut(s) 32
VpaK11BI GGWCC 3 cut(s) 193, 356, 940
XapI RAATTY 2 cut(s) 85, 391
XmiI GTMKAC 1 cut(s) 164
XspI CTAG 2 cut(s) 360, 851
Zsp2I ATGCAT 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.