MD11G1002400.v1.1

YTH domain family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0001378
Physical Location & Seq
Reverse (-)
219204 .. 223869
4666 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1002400.v1.1.491

Sequence Viewer

Length: 2115 bp
ATGGCCACCGTTGCTCCTCCTGTGGAACAAGCAGCAGATTTGCTACAGAAGATGTCATTAGACTCTCAAACCAAGACTTTGGAAATTCCTGAGCCTACCAAGAAGCCTTCTGGTAACCAATACGGGTCTATTGATTCTGGCAATGCTGCAAATGGACAGATCCCAGCAGAGCGCTCTGTTACCCCATTGTTACCTGATTTCACGGATCCATCTATGTGCTATCTCCCGAACAGTTATCCATCGACTGCCTATTACTATGGAGGTTATGATGGGACTGGCAGCGAGTGGGATGACTACTCGAGATATGTAAATCATGAGGGAGTAGAGATGACTTCTGGTGTTTATGGGGACAACGGGTCTCTGATATACCACCATGGGTACGGGTATGCACCTTATGCCCCATATTCTCCGGCAGGCTCCCCTGTTCCGACTATGGGAAATGATGGTCAGTTATATGGACCTCAGCAGTACCAATACCCTCCCTATTTCCAGCCTCTGACTCCAACCAGTGGACCATACACTCCCAACCCTGCTGCCCCACAAACTGATGTCGCCACCTCTGTAGCTGCTGACCAAAAGCCACTGTCTGTGGAAACAGCTAATGGAATTTCCAACGGCATTGCAAACAGTGGAGGTGTGAAAGGAAATAATGTTTCAGCTCCCTTGTCAACATATCAAAACTCGTCTTTCAACTCTAATGGTTCATATGGAAGGGGTGCTTTGCCAGGACGTGTTCCTACTCCTGGATACCAGGACCCAAGATTTGGTTTTGATGGGTTGCGTTCTCCTCGTCCATGGTTAGATGCCCCACTTTTTTCGGACGGGCAACCTAGACCAGTGACAAATACAATTACTTCGTCAATCTCCAATGGCAATACCAATTTTTCTTCAAGGAATCAGAATTACCGTCCAAATTCTCATTACATGGGTTTGCACCACCCAAGGCCATTGTCAGGAATGGGTGCAGCTCAAGGGTTTATAAATAGGATGTACCCAAGCAAGTTGTATGGTCAGTATGGAAACACAGTTAGATCTGGTATGGGCTTTGGGTCTCATGGTTATGATTCACGAACCAATGGACGCGCATGGCTTGCTGTTGACAACAAGTATAAACCCAGGGGAAGAAATGGTGGCTATTATGGATATAGTAATGAGAACATGGATGGATTAAATGAACTAAACAGGGGACCTCGGGCGAAGAGCTCCAAGAATCAAAAGGGATTTGCCCCTAATGCATTAGCAATCAAGGGGCAAGTACCAACGAATCCTAGTAATGATGAGGAAAACGAAAAAACCAGTGTCCCAGATCGAGAACAATACAACAAAGCAGATTTTCCCGAGGAGTATACTGATGCCAAATTCTTCATCATTAAGTCATACAGTGAGGATGATGTTCATAAGAGCATTAAGTATAATGTTTGGGCTAGTACACCAAATGGCAACAAGAAGCTTCATGCTGCATACCAGGAGGCTCAGGAGAAATCTGGTGGCTGCCCTGTTTTTCTTCTCTTTTCGGTCAATACCAGTGGACAGTTTGTTGGCCTTGCCGAGATGTTGGGCCCTGTTGATTTTAACAAGAACTTGGAGTACTGGCAGCAAGACAAGTGGAATGGCTGTTTCCCTGTCAAGTGGCATATCGTTAAAGATGTTCCCAACAGTTTGCTGAAGCACATTACTCTTGAAAATAATGAGAACAAGCCTGTGACCAACAGTAGGGACACTCAGGAGGTCAAATTGGAGCCAGGGCTTAAAATAATTAAAATCTTCAAGGAACTTATAAGCAAAACTTGCATTCTGGATGACTTTGGGTTCTATGAGGCCCGCCAGAAGACAATTCAGGAGAAGAAGGCTAAGCAACAGCAGTTTCAGAAACAGGTATGGGAAGGAAAAAACAATGATGAGAAGGAGCAGGTGGAAAATGGGCAACTGAAGACTCAAAATTCATTGGAGGTTCCCGCTGAGTTGACCAAGGAATCTGTTCCGGCGGTGAGCGGAAGTGAGGAGCCGAAAGTTGCAGAAAATGGATCAATTGCATCTGGAGATGCCCCAAAGGGTGCTAAGCCAGTTGTGTCAGATAAGAGGGTTGTAGCAAACGGGGTTGCGAATGGTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

705

Amino Acids

77.05

Weight (kDa)

6.46

Isoelectric Point (pI)

33.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 452 - 590 3.2e-48 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 980, 1778
AarI CACCTGC 1 cut(s) 1900
Acc36I ACCTGC 1 cut(s) 1900
AccB7I CCANNNNNTGG 2 cut(s) 509, 764
AccBSI CCGCTC 1 cut(s) 1992
AccI GTMKAC 1 cut(s) 1346
AccII CGCG 1 cut(s) 1083
AciI CCGC 4 cut(s) 1822, 1956, 1985, 1992
AclWI GGATC 4 cut(s) 154, 200, 213, 2032
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 84, 606, 913, 1358, 1939
AcuI CTGAAG 2 cut(s) 1685, 1949
AfaI GTAC 6 cut(s) 380, 470, 992, 1257, 1429, 1589
AfeI AGCGCT 1 cut(s) 173
AfiI CCNNNNNNNGG 6 cut(s) 434, 509, 743, 764, 953, 1713
AflIII ACRYGT 1 cut(s) 730
AgsI TTSAA 4 cut(s) 691, 891, 1682, 1768
AhdI GACNNNNNGTC 1 cut(s) 355
AjiI CACGTC 1 cut(s) 731
AjnI CCWGG 6 cut(s) 724, 742, 750, 1115, 1464, 1741
AluBI AGCT 6 cut(s) 566, 599, 659, 968, 1203, 1450
AluI AGCT 6 cut(s) 566, 599, 659, 968, 1203, 1450
Alw21I GWGCWC 1 cut(s) 1205
Alw26I GTCTC 2 cut(s) 363, 1056
AlwI GGATC 4 cut(s) 154, 200, 213, 2032
AlwNI CAGNNNCTG 1 cut(s) 496
Ama87I CYCGRG 3 cut(s) 298, 1191, 1337
Aor51HI AGCGCT 1 cut(s) 173
AoxI GGCC 5 cut(s) 3, 944, 1540, 1558, 1818
ApaI GGGCCC 1 cut(s) 1562
ApeKI GCWGC 9 cut(s) 32, 146, 279, 533, 566, 965, 1457, 1491, 1594
ApoI RAATTY 5 cut(s) 84, 606, 913, 1358, 1939
ArsI GACNNNNNNTTYG 2 cut(s) 746, 778
Asp700I GAANNNNTTC 1 cut(s) 1977
AspLEI GCGC 2 cut(s) 174, 1085
AspS9I GGNCC 7 cut(s) 458, 512, 754, 1187, 1558, 1559, 1819
AsuHPI GGTGA 1 cut(s) 1999
AvaI CYCGRG 3 cut(s) 298, 1191, 1337
AvaII GGWCC 4 cut(s) 458, 512, 754, 1187
BaeGI GKGCMC 1 cut(s) 1562
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 205
BanII GRGCYC 2 cut(s) 1205, 1562
BbsI GAAGAC 2 cut(s) 1835, 1937
Bbv12I GWGCWC 1 cut(s) 1205
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 9 cut(s) 44, 133, 291, 520, 553, 977, 1444, 1478, 1606
BccI CCATC 6 cut(s) 217, 247, 263, 437, 767, 1157
BceAI ACGGC 1 cut(s) 631
BciT130I CCWGG 6 cut(s) 726, 744, 752, 1117, 1466, 1743
BciVI GTATCC 1 cut(s) 740
BcoDI GTCTC 2 cut(s) 363, 1056
BfaI CTAG 4 cut(s) 831, 1269, 1425, 2113
BfmI CTRYAG 2 cut(s) 44, 561
BfoI RGCGCY 1 cut(s) 175
BfuAI ACCTGC 1 cut(s) 1900
BfuI GTATCC 1 cut(s) 740
BglII AGATCT 1 cut(s) 1031
BisI GCNGC 9 cut(s) 33, 147, 280, 534, 567, 966, 1458, 1492, 1595
BlpI GCTNAGC 2 cut(s) 1851, 2058
BlsI GCNGC 9 cut(s) 34, 148, 281, 535, 568, 967, 1459, 1493, 1596
BmcAI AGTACT 1 cut(s) 1589
Bme1390I CCNGG 6 cut(s) 726, 744, 752, 1117, 1466, 1743
Bme18I GGWCC 4 cut(s) 458, 512, 754, 1187
BmeRI GACNNNNNGTC 1 cut(s) 355
BmeT110I CYCGRG 3 cut(s) 298, 1191, 1337
BmgBI CACGTC 1 cut(s) 731
BmgT120I GGNCC 7 cut(s) 458, 512, 754, 1187, 1558, 1559, 1819
BmiI GGNNCC 8 cut(s) 207, 418, 756, 1188, 1560, 1740, 1953, 2004
BmrFI CCNGG 6 cut(s) 726, 744, 752, 1117, 1466, 1743
BmsI GCATC 4 cut(s) 793, 1342, 2032, 2042
BpiI GAAGAC 2 cut(s) 1835, 1937
BpmI CTGGAG 1 cut(s) 2058
Bpu10I CCTNAGC 3 cut(s) 90, 462, 1473
Bpu1102I GCTNAGC 2 cut(s) 1851, 2058
BpuEI CTTGAG 1 cut(s) 954
BsaI GGTCTC 2 cut(s) 363, 1056
BsaJI CCNNGG 9 cut(s) 373, 794, 941, 1115, 1116, 1190, 1338, 1742, 1968
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 6 cut(s) 434, 509, 743, 764, 953, 1713
Bse1I ACTGG 7 cut(s) 280, 507, 836, 1296, 1524, 1595, 2063
Bse3DI GCAATG 2 cut(s) 148, 618
BseBI CCWGG 6 cut(s) 726, 744, 752, 1117, 1466, 1743
BseDI CCNNGG 9 cut(s) 373, 794, 941, 1115, 1116, 1190, 1338, 1742, 1968
BseGI GGATG 5 cut(s) 295, 993, 1168, 1393, 1804
BseLI CCNNNNNNNGG 6 cut(s) 434, 509, 743, 764, 953, 1713
BseMI GCAATG 2 cut(s) 148, 618
BseMII CTCAG 5 cut(s) 81, 476, 1487, 1736, 1950
BseNI ACTGG 7 cut(s) 280, 507, 836, 1296, 1524, 1595, 2063
BseRI GAGGAG 4 cut(s) 6, 777, 1355, 2015
BseSI GKGCMC 1 cut(s) 1562
BseXI GCAGC 9 cut(s) 44, 133, 291, 520, 553, 977, 1444, 1478, 1606
BseYI CCCAGC 1 cut(s) 163
BsgI GTGCAG 1 cut(s) 984
Bsh1236I CGCG 1 cut(s) 1083
BshFI GGCC 5 cut(s) 5, 946, 1542, 1560, 1820
BsiHKAI GWGCWC 1 cut(s) 1205
BsiHKCI CYCGRG 3 cut(s) 298, 1191, 1337
BsiSI CCGG 2 cut(s) 410, 1982
BslFI GGGAC 5 cut(s) 286, 362, 1200, 1286, 1730
BslI CCNNNNNNNGG 6 cut(s) 434, 509, 743, 764, 953, 1713
BsmAI GTCTC 2 cut(s) 363, 1056
BsmFI GGGAC 5 cut(s) 286, 362, 1200, 1286, 1730
BsmI GAATGC 1 cut(s) 1791
BsnI GGCC 5 cut(s) 5, 946, 1542, 1560, 1820
Bso31I GGTCTC 2 cut(s) 363, 1056
BsoBI CYCGRG 3 cut(s) 298, 1191, 1337
Bsp120I GGGCCC 1 cut(s) 1558
Bsp1286I GDGCHC 2 cut(s) 1205, 1562
Bsp143I GATC 5 cut(s) 159, 205, 1031, 1306, 2024
Bsp1720I GCTNAGC 2 cut(s) 1851, 2058
Bsp19I CCATGG 2 cut(s) 373, 794
BspACI CCGC 4 cut(s) 1822, 1956, 1985, 1992
BspANI GGCC 5 cut(s) 5, 946, 1542, 1560, 1820
BspCNI CTCAG 5 cut(s) 82, 475, 1486, 1735, 1951
BspFNI CGCG 1 cut(s) 1083
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 8 cut(s) 207, 418, 756, 1188, 1560, 1740, 1953, 2004
BspMI ACCTGC 1 cut(s) 1900
BspPI GGATC 4 cut(s) 154, 200, 213, 2032
BspQI GCTCTTC 1 cut(s) 1193
BspTNI GGTCTC 2 cut(s) 363, 1056
BsrBI CCGCTC 1 cut(s) 1992
BsrDI GCAATG 2 cut(s) 148, 618
BsrI ACTGG 7 cut(s) 280, 507, 836, 1296, 1524, 1595, 2063
BssECI CCNNGG 9 cut(s) 373, 794, 941, 1115, 1116, 1190, 1338, 1742, 1968
BssMI GATC 5 cut(s) 159, 205, 1031, 1306, 2024
BssNAI GTATAC 1 cut(s) 1347
BssT1I CCWWGG 4 cut(s) 373, 794, 941, 1968
Bst1107I GTATAC 1 cut(s) 1347
Bst2UI CCWGG 6 cut(s) 726, 744, 752, 1117, 1466, 1743
Bst6I CTCTTC 1 cut(s) 1193
BstAPI GCANNNNNTGC 3 cut(s) 395, 1091, 1788
BstC8I GCNNGC 3 cut(s) 415, 1092, 1822
BstDEI CTNAG 7 cut(s) 90, 462, 1473, 1722, 1851, 1959, 2058
BstDSI CCRYGG 2 cut(s) 373, 794
BstEII GGTNACC 1 cut(s) 113
BstF5I GGATG 5 cut(s) 295, 993, 1168, 1393, 1804
BstFNI CGCG 1 cut(s) 1083
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 2 cut(s) 174, 1085
BstKTI GATC 5 cut(s) 162, 208, 1034, 1309, 2027
BstMAI GTCTC 2 cut(s) 363, 1056
BstMBI GATC 5 cut(s) 159, 205, 1031, 1306, 2024
BstMWI GCNNNNNNNGC 5 cut(s) 11, 395, 1091, 1232, 1788
BstNI CCWGG 6 cut(s) 726, 744, 752, 1117, 1466, 1743
BstPI GGTNACC 1 cut(s) 113
BstSCI CCNGG 6 cut(s) 724, 742, 750, 1115, 1464, 1741
BstSFI CTRYAG 2 cut(s) 44, 561
BstSLI GKGCMC 1 cut(s) 1562
BstUI CGCG 1 cut(s) 1083
BstV1I GCAGC 9 cut(s) 44, 133, 291, 520, 553, 977, 1444, 1478, 1606
BstV2I GAAGAC 2 cut(s) 1835, 1937
BstX2I RGATCY 3 cut(s) 159, 205, 1031
BstXI CCANNNNNNTGG 1 cut(s) 79
BstYI RGATCY 3 cut(s) 159, 205, 1031
BstZ17I GTATAC 1 cut(s) 1347
BsuI GTATCC 1 cut(s) 740
BsuRI GGCC 5 cut(s) 5, 946, 1542, 1560, 1820
BtgI CCRYGG 2 cut(s) 373, 794
BtrI CACGTC 1 cut(s) 731
BtsCI GGATG 5 cut(s) 295, 993, 1168, 1393, 1804
BtsIMutI CAGTG 7 cut(s) 514, 581, 634, 843, 1303, 1387, 1531
BveI ACCTGC 1 cut(s) 1900
Cac8I GCNNGC 3 cut(s) 415, 1092, 1822
CaiI CAGNNNCTG 1 cut(s) 496
CciI TCATGA 1 cut(s) 313
CfoI GCGC 2 cut(s) 174, 1085
Cfr13I GGNCC 7 cut(s) 458, 512, 754, 1187, 1558, 1559, 1819
CseI GACGC 1 cut(s) 1089
Csp6I GTAC 6 cut(s) 379, 469, 991, 1256, 1428, 1588
CspCI CAANNNNNGTGG 4 cut(s) 1507, 1542, 1586, 1621
CviAII CATG 8 cut(s) 314, 374, 795, 925, 1055, 1086, 1159, 1454
CviQI GTAC 6 cut(s) 379, 469, 991, 1256, 1428, 1588
DdeI CTNAG 7 cut(s) 90, 462, 1473, 1722, 1851, 1959, 2058
DpnI GATC 5 cut(s) 161, 207, 1033, 1308, 2026
DpnII GATC 5 cut(s) 159, 205, 1031, 1306, 2024
DriI GACNNNNNGTC 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 1193
Eam1105I GACNNNNNGTC 1 cut(s) 355
EarI CTCTTC 1 cut(s) 1193
Ecl136II GAGCTC 1 cut(s) 1203
Eco130I CCWWGG 4 cut(s) 373, 794, 941, 1968
Eco24I GRGCYC 2 cut(s) 1205, 1562
Eco31I GGTCTC 2 cut(s) 363, 1056
Eco47I GGWCC 4 cut(s) 458, 512, 754, 1187
Eco47III AGCGCT 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 1203
Eco57I CTGAAG 2 cut(s) 1685, 1949
Eco88I CYCGRG 3 cut(s) 298, 1191, 1337
Eco91I GGTNACC 1 cut(s) 113
EcoICRI GAGCTC 1 cut(s) 1203
EcoO109I RGGNCCY 3 cut(s) 754, 1187, 1559
EcoO65I GGTNACC 1 cut(s) 113
EcoRII CCWGG 6 cut(s) 724, 742, 750, 1115, 1464, 1741
EcoT14I CCWWGG 4 cut(s) 373, 794, 941, 1968
EcoT22I ATGCAT 1 cut(s) 1237
EcoT38I GRGCYC 2 cut(s) 1205, 1562
ErhI CCWWGG 4 cut(s) 373, 794, 941, 1968
FaeI CATG 8 cut(s) 317, 377, 798, 928, 1058, 1089, 1162, 1457
FalI AAGNNNNNCTT 4 cut(s) 703, 735, 1771, 1803
FaqI GGGAC 5 cut(s) 286, 362, 1200, 1286, 1730
FatI CATG 8 cut(s) 313, 373, 794, 924, 1054, 1085, 1158, 1453
FauI CCCGC 2 cut(s) 1829, 1963
FauNDI CATATG 1 cut(s) 706
FblI GTMKAC 1 cut(s) 1346
Fnu4HI GCNGC 9 cut(s) 33, 147, 280, 534, 567, 966, 1458, 1492, 1595
FokI GGATG 5 cut(s) 302, 1000, 1175, 1400, 1811
FriOI GRGCYC 2 cut(s) 1205, 1562
Fsp4HI GCNGC 9 cut(s) 33, 147, 280, 534, 567, 966, 1458, 1492, 1595
FspBI CTAG 4 cut(s) 831, 1269, 1425, 2113
GlaI GCGC 2 cut(s) 173, 1084
GluI GCNGC 9 cut(s) 33, 147, 280, 534, 567, 966, 1458, 1492, 1595
GsaI CCCAGC 1 cut(s) 167
GsuI CTGGAG 1 cut(s) 2058
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 5 cut(s) 5, 946, 1542, 1560, 1820
HapII CCGG 2 cut(s) 410, 1982
HgaI GACGC 1 cut(s) 1089
HhaI GCGC 2 cut(s) 174, 1085
Hin1II CATG 8 cut(s) 317, 377, 798, 928, 1058, 1089, 1162, 1457
Hin6I GCGC 2 cut(s) 172, 1083
HinP1I GCGC 2 cut(s) 172, 1083
HincII GTYRAC 3 cut(s) 669, 1099, 1965
HindII GTYRAC 3 cut(s) 669, 1099, 1965
HindIII AAGCTT 1 cut(s) 1448
HinfI GANTC 9 cut(s) 62, 134, 499, 895, 1064, 1210, 1264, 1933, 1973
HpaII CCGG 2 cut(s) 410, 1982
HphI GGTGA 1 cut(s) 1999
Hpy166II GTNNAC 7 cut(s) 512, 669, 1099, 1347, 1430, 1529, 1965
Hpy188I TCNGA 7 cut(s) 363, 429, 498, 820, 900, 1869, 2074
Hpy8I GTNNAC 7 cut(s) 512, 669, 1099, 1347, 1430, 1529, 1965
HpyAV CCTTC 5 cut(s) 117, 705, 1840, 1877, 1897
HpyCH4IV ACGT 1 cut(s) 730
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 395, 1091, 1232, 1788
HpyF3I CTNAG 7 cut(s) 90, 462, 1473, 1722, 1851, 1959, 2058
HpySE526I ACGT 1 cut(s) 730
Hsp92II CATG 8 cut(s) 317, 377, 798, 928, 1058, 1089, 1162, 1457
HspAI GCGC 2 cut(s) 172, 1083
Kzo9I GATC 5 cut(s) 159, 205, 1031, 1306, 2024
LguI GCTCTTC 1 cut(s) 1193
LmnI GCTCC 7 cut(s) 19, 422, 664, 1208, 1738, 1906, 2002
Lsp1109I GCAGC 9 cut(s) 44, 133, 291, 520, 553, 977, 1444, 1478, 1606
LweI GCATC 4 cut(s) 793, 1342, 2032, 2042
MaeI CTAG 4 cut(s) 831, 1269, 1425, 2113
MaeII ACGT 1 cut(s) 730
MaeIII GTNAC 5 cut(s) 113, 178, 189, 838, 1702
MalI GATC 5 cut(s) 161, 207, 1033, 1308, 2026
MbiI CCGCTC 1 cut(s) 1992
MboI GATC 5 cut(s) 159, 205, 1031, 1306, 2024
MfeI CAATTG 1 cut(s) 2028
MflI RGATCY 3 cut(s) 159, 205, 1031
MhlI GDGCHC 2 cut(s) 1205, 1562
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 56, 493, 1927
MmeI TCCRAC 3 cut(s) 452, 527, 636
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 1237
MroXI GAANNNNTTC 1 cut(s) 1977
MscI TGGCCA 1 cut(s) 5
MseI TTAA 7 cut(s) 1169, 1371, 1407, 1572, 1641, 1749, 1758
MslI CAYNNNNRTG 2 cut(s) 214, 1059
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 1958
MspI CCGG 2 cut(s) 410, 1982
MspR9I CCNGG 6 cut(s) 726, 744, 752, 1117, 1466, 1743
MunI CAATTG 1 cut(s) 2028
Mva1269I GAATGC 1 cut(s) 1791
MvaI CCWGG 6 cut(s) 726, 744, 752, 1117, 1466, 1743
MvnI CGCG 1 cut(s) 1083
MwoI GCNNNNNNNGC 5 cut(s) 11, 395, 1091, 1232, 1788
NcoI CCATGG 2 cut(s) 373, 794
NdeI CATATG 1 cut(s) 706
NdeII GATC 5 cut(s) 159, 205, 1031, 1306, 2024
NlaIII CATG 8 cut(s) 317, 377, 798, 928, 1058, 1089, 1162, 1457
NlaIV GGNNCC 8 cut(s) 207, 418, 756, 1188, 1560, 1740, 1953, 2004
NmeAIII GCCGAG 1 cut(s) 1573
NmuCI GTSAC 2 cut(s) 838, 1702
NsiI ATGCAT 1 cut(s) 1237
PaeR7I CTCGAG 1 cut(s) 298
PagI TCATGA 1 cut(s) 313
PaqCI CACCTGC 1 cut(s) 1900
PasI CCCWGGG 1 cut(s) 1116
PciSI GCTCTTC 1 cut(s) 1193
PctI GAATGC 1 cut(s) 1791
PdmI GAANNNNTTC 1 cut(s) 1977
PfeI GAWTC 6 cut(s) 134, 895, 1064, 1210, 1264, 1973
PflMI CCANNNNNTGG 2 cut(s) 509, 764
PfoI TCCNGGA 1 cut(s) 742
PkrI GCNGC 9 cut(s) 34, 148, 281, 535, 568, 967, 1459, 1493, 1596
PleI GAGTC 3 cut(s) 56, 493, 1927
PpsI GAGTC 3 cut(s) 56, 493, 1927
PpuMI RGGWCCY 2 cut(s) 754, 1187
PsiI TTATAA 2 cut(s) 980, 1778
Psp124BI GAGCTC 1 cut(s) 1205
Psp5II RGGWCCY 2 cut(s) 754, 1187
Psp6I CCWGG 6 cut(s) 724, 742, 750, 1115, 1464, 1741
PspEI GGTNACC 1 cut(s) 113
PspFI CCCAGC 1 cut(s) 163
PspGI CCWGG 6 cut(s) 724, 742, 750, 1115, 1464, 1741
PspN4I GGNNCC 8 cut(s) 207, 418, 756, 1188, 1560, 1740, 1953, 2004
PspOMI GGGCCC 1 cut(s) 1558
PspPI GGNCC 7 cut(s) 458, 512, 754, 1187, 1558, 1559, 1819
PspPPI RGGWCCY 2 cut(s) 754, 1187
PsrI GAACNNNNNNTAC 2 cut(s) 1571, 1603
PstNI CAGNNNCTG 1 cut(s) 496
PsuI RGATCY 3 cut(s) 159, 205, 1031
RsaI GTAC 6 cut(s) 380, 470, 992, 1257, 1429, 1589
RsaNI GTAC 6 cut(s) 379, 469, 991, 1256, 1428, 1588
RseI CAYNNNNRTG 2 cut(s) 214, 1059
SacI GAGCTC 1 cut(s) 1205
SapI GCTCTTC 1 cut(s) 1193
SaqAI TTAA 7 cut(s) 1169, 1371, 1407, 1572, 1641, 1749, 1758
SatI GCNGC 9 cut(s) 33, 147, 280, 534, 567, 966, 1458, 1492, 1595
Sau3AI GATC 5 cut(s) 159, 205, 1031, 1306, 2024
Sau96I GGNCC 7 cut(s) 458, 512, 754, 1187, 1558, 1559, 1819
ScaI AGTACT 1 cut(s) 1589
SchI GAGTC 3 cut(s) 56, 493, 1927
ScrFI CCNGG 6 cut(s) 726, 744, 752, 1117, 1466, 1743
SduI GDGCHC 2 cut(s) 1205, 1562
SfaNI GCATC 4 cut(s) 793, 1342, 2032, 2042
SfcI CTRYAG 2 cut(s) 44, 561
Sfr274I CTCGAG 1 cut(s) 298
SinI GGWCC 4 cut(s) 458, 512, 754, 1187
SlaI CTCGAG 1 cut(s) 298
SmiMI CAYNNNNRTG 2 cut(s) 214, 1059
SmlI CTYRAG 2 cut(s) 298, 969
SmoI CTYRAG 2 cut(s) 298, 969
SsiI CCGC 4 cut(s) 1822, 1956, 1985, 1992
SspMI CTAG 4 cut(s) 831, 1269, 1425, 2113
SstI GAGCTC 1 cut(s) 1205
StyD4I CCNGG 6 cut(s) 724, 742, 750, 1115, 1464, 1741
StyI CCWWGG 4 cut(s) 373, 794, 941, 1968
TaiI ACGT 1 cut(s) 733
TaqI TCGA 3 cut(s) 242, 299, 1309
TaqII GACCGA 1 cut(s) 1504
TatI WGTACW 2 cut(s) 1427, 1587
TfiI GAWTC 6 cut(s) 134, 895, 1064, 1210, 1264, 1973
Tru1I TTAA 7 cut(s) 1169, 1371, 1407, 1572, 1641, 1749, 1758
Tru9I TTAA 7 cut(s) 1169, 1371, 1407, 1572, 1641, 1749, 1758
TscAI CASTG 7 cut(s) 514, 588, 634, 843, 1303, 1387, 1531
TseFI GTSAC 2 cut(s) 838, 1702
TseI GCWGC 9 cut(s) 32, 146, 279, 533, 566, 965, 1457, 1491, 1594
Tsp45I GTSAC 2 cut(s) 838, 1702
TspDTI ATGAA 6 cut(s) 693, 1188, 1354, 1385, 1442, 1932
TspGWI ACGGA 1 cut(s) 218
TspRI CASTG 7 cut(s) 514, 588, 634, 843, 1303, 1387, 1531
Van91I CCANNNNNTGG 2 cut(s) 509, 764
VpaK11BI GGWCC 4 cut(s) 458, 512, 754, 1187
XapI RAATTY 5 cut(s) 84, 606, 913, 1358, 1939
XhoI CTCGAG 1 cut(s) 298
XmiI GTMKAC 1 cut(s) 1346
XmnI GAANNNNTTC 1 cut(s) 1977
XspI CTAG 4 cut(s) 831, 1269, 1425, 2113
ZrmI AGTACT 1 cut(s) 1589
Zsp2I ATGCAT 1 cut(s) 1237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.