Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8176898.1

Orthogroup ID

OG0001378

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 680

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8176898.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 596 bp

ggtttgcaccacccaagaccactgtcaggaataggtacagctcaagggtttatgaatagcagcatgtacccaagcaagttatttggccagtatggaaacacagttagatccggtctgggatttgggtctcatggttatgattcgcgatccaatggacgcacatggctggctgttgacaacaagtataaacaacccaggggacgtaatggtggttactatggatatggtaatgagaactcggatggtttaaatgaactcaacagaggacctcgggcgagaggctcaaagaaccaaaagagttttccccctagtgcattggctatcaagggacagaacgtgccagcaaatcttagtaatgatgaggaaaaggatacaagttctgttccagacagagagcagtacaacaaagcagattttccggaggattatactgatgccaaatttttcatcatcaagtcatatagtgaggatgatgtccataaaagcatcaagtataatgtttgggccagcacaccaaatggcaacaagaaacttcatgcagcatatcaggaggctcaggagaagactggtggctgccctgtatttctttttttctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

199

Amino Acids

22.03

Weight (kDa)

9.16

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55500 AT1G55500 AT1G55500 AT1G55500 AT1G55500 AT1G55500 AT3G13460 AT3G13460 AT3G13460 AT3G13460
fragaria_vesca	FvH4_3g45840 FvH4_3g45840 FvH4_3g45840 FvH4_3g45840 FvH4_3g45841 FvH4_3g45841 FvH4_3g45841
malus_domestica	MD03G1002400.v1.1 MD03G1002500.v1.1 MD11G1002300.v1.1 MD11G1002400.v1.1
prunus_persica	Prupe.6G002200_v2.0.a1 Prupe.6G002200_v2.0.a1
pyrus_communis	pycom03g00230 pycom03g00240 pycom11g00210 pycom11g00220
rosa_chinensis	RchiOBHm_Chr5g0083931 RchiOBHm_Chr5g0083941
rosa_laevigata	RLG00000037065 RLG00000037066
rosa_multiflora	Rmu_co8176898.1_g000001 Rmu_co8377747.1_g000001 Rmu_co8387395.1_g000001 Rmu_sc0001137.1_g000004 Rmu_sc0001137.1_g000005 Rmu_sc0043081.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000680
rosa_rugosa	Rorug05G0487700 Rorug05G0487700 Rorug05G0487700 Rorug05G0487700 Rorug05G0487700
rosa_samantha	Rh5AG540500 Rh5AG540600 Rh5BG565500 Rh5BG565600 Rh5CG587400 Rh5CG587500 Rh5DG574100 Rh5DG574200
rosa_wichuraiana	Rw5G050260 Rw5G050270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	145
AccIII	TCCGGA	1 cut(s)	418
AclWI	GGATC	2 cut(s)	102, 141
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	1 cut(s)	440
AfaI	GTAC	3 cut(s)	37, 68, 401
AfiI	CCNNNNNNNGG	1 cut(s)	26
AjnI	CCWGG	1 cut(s)	194
AjuI	GAANNNNNNNTTGG	2 cut(s)	285, 317
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	2 cut(s)	102, 141
Ama87I	CYCGRG	1 cut(s)	270
Aor13HI	TCCGGA	1 cut(s)	418
AoxI	GGCC	2 cut(s)	85, 504
ApeKI	GCWGC	3 cut(s)	60, 539, 573
ApoI	RAATTY	1 cut(s)	440
AspS9I	GGNCC	2 cut(s)	266, 504
AvaI	CYCGRG	1 cut(s)	270
AvaII	GGWCC	1 cut(s)	266
BalI	TGGCCA	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	569
BbvI	GCAGC	3 cut(s)	72, 551, 560
BccI	CCATC	1 cut(s)	236
BciT130I	CCWGG	1 cut(s)	196
BciVI	GTATCC	1 cut(s)	364
BcoDI	GTCTC	1 cut(s)	132
BfaI	CTAG	1 cut(s)	309
BfuI	GTATCC	1 cut(s)	364
BisI	GCNGC	3 cut(s)	61, 540, 574
BlsI	GCNGC	3 cut(s)	62, 541, 575
Bme1390I	CCNGG	1 cut(s)	196
Bme18I	GGWCC	1 cut(s)	266
BmeT110I	CYCGRG	1 cut(s)	270
BmgT120I	GGNCC	2 cut(s)	266, 504
BmrFI	CCNGG	1 cut(s)	196
BmsI	GCATC	2 cut(s)	424, 495
BoxI	GACNNNNGTC	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	569
Bpu10I	CCTNAGC	1 cut(s)	555
BpuEI	CTTGAG	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	132
BsaJI	CCNNGG	3 cut(s)	194, 195, 269
BsaWI	WCCGGW	2 cut(s)	110, 418
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	88, 571
BseAI	TCCGGA	1 cut(s)	418
BseBI	CCWGG	1 cut(s)	196
BseDI	CCNNGG	3 cut(s)	194, 195, 269
BseGI	GGATG	2 cut(s)	247, 475
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseMII	CTCAG	1 cut(s)	569
BseNI	ACTGG	2 cut(s)	88, 571
BseXI	GCAGC	3 cut(s)	72, 551, 560
Bsh1236I	CGCG	1 cut(s)	145
BshFI	GGCC	2 cut(s)	87, 506
BsiHKCI	CYCGRG	1 cut(s)	270
BsiSI	CCGG	2 cut(s)	111, 419
BslFI	GGGAC	2 cut(s)	213, 342
BslI	CCNNNNNNNGG	1 cut(s)	26
BsmAI	GTCTC	1 cut(s)	132
BsmFI	GGGAC	2 cut(s)	213, 342
BsnI	GGCC	2 cut(s)	87, 506
Bso31I	GGTCTC	1 cut(s)	132
BsoBI	CYCGRG	1 cut(s)	270
Bsp13I	TCCGGA	1 cut(s)	418
Bsp143I	GATC	2 cut(s)	107, 146
Bsp68I	TCGCGA	1 cut(s)	145
BspANI	GGCC	2 cut(s)	87, 506
BspCNI	CTCAG	1 cut(s)	568
BspEI	TCCGGA	1 cut(s)	418
BspFNI	CGCG	1 cut(s)	145
BspPI	GGATC	2 cut(s)	102, 141
BspTNI	GGTCTC	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	88, 571
BssECI	CCNNGG	3 cut(s)	194, 195, 269
BssMI	GATC	2 cut(s)	107, 146
Bst2UI	CCWGG	1 cut(s)	196
Bst4CI	ACNGT	2 cut(s)	24, 103
BstC8I	GCNNGC	3 cut(s)	168, 342, 508
BstDEI	CTNAG	2 cut(s)	350, 555
BstF5I	GGATG	2 cut(s)	247, 475
BstFNI	CGCG	1 cut(s)	145
BstKTI	GATC	2 cut(s)	110, 149
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	2 cut(s)	107, 146
BstNI	CCWGG	1 cut(s)	196
BstNSI	RCATGY	1 cut(s)	67
BstPAI	GACNNNNGTC	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	194
BstUI	CGCG	1 cut(s)	145
BstV1I	GCAGC	3 cut(s)	72, 551, 560
BstV2I	GAAGAC	1 cut(s)	569
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BsuI	GTATCC	1 cut(s)	364
BsuRI	GGCC	2 cut(s)	87, 506
BtsCI	GGATG	2 cut(s)	247, 475
BtsIMutI	CAGTG	1 cut(s)	20
BtuMI	TCGCGA	1 cut(s)	145
Cac8I	GCNNGC	3 cut(s)	168, 342, 508
Cfr13I	GGNCC	2 cut(s)	266, 504
CseI	GACGC	1 cut(s)	165
Csp6I	GTAC	3 cut(s)	36, 67, 400
CviAII	CATG	4 cut(s)	64, 131, 162, 536
CviJI	RGCY	9 cut(s)	41, 87, 166, 170, 282, 320, 506, 554, 573
CviKI_1	RGCY	9 cut(s)	41, 87, 166, 170, 282, 320, 506, 554, 573
CviQI	GTAC	3 cut(s)	36, 67, 400
DdeI	CTNAG	2 cut(s)	350, 555
DpnI	GATC	2 cut(s)	109, 148
DpnII	GATC	2 cut(s)	107, 146
DraI	TTTAAA	1 cut(s)	249
EaeI	YGGCCR	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	194
FaeI	CATG	4 cut(s)	67, 134, 165, 539
FaqI	GGGAC	2 cut(s)	213, 342
FatI	CATG	4 cut(s)	63, 130, 161, 535
Fnu4HI	GCNGC	3 cut(s)	61, 540, 574
FokI	GGATG	2 cut(s)	254, 482
Fsp4HI	GCNGC	3 cut(s)	61, 540, 574
FspBI	CTAG	1 cut(s)	309
GluI	GCNGC	3 cut(s)	61, 540, 574
HaeIII	GGCC	2 cut(s)	87, 506
HapII	CCGG	2 cut(s)	111, 419
HgaI	GACGC	1 cut(s)	165
Hin1II	CATG	4 cut(s)	67, 134, 165, 539
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	1 cut(s)	140
HpaII	CCGG	2 cut(s)	111, 419
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	6 cut(s)	27, 144, 386, 419, 548, 557
Hpy8I	GTNNAC	1 cut(s)	175
HpyCH4III	ACNGT	2 cut(s)	24, 103
HpyCH4IV	ACGT	2 cut(s)	202, 336
HpyCH4V	TGCA	3 cut(s)	7, 314, 539
HpyF3I	CTNAG	2 cut(s)	350, 555
HpySE526I	ACGT	2 cut(s)	202, 336
Hsp92II	CATG	4 cut(s)	67, 134, 165, 539
Kpn2I	TCCGGA	1 cut(s)	418
Kzo9I	GATC	2 cut(s)	107, 146
Lsp1109I	GCAGC	3 cut(s)	72, 551, 560
LweI	GCATC	2 cut(s)	424, 495
MaeI	CTAG	1 cut(s)	309
MaeII	ACGT	2 cut(s)	202, 336
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	2 cut(s)	109, 148
MboI	GATC	2 cut(s)	107, 146
MboII	GAAGA	1 cut(s)	574
MflI	RGATCY	1 cut(s)	107
MlsI	TGGCCA	1 cut(s)	87
MluCI	AATT	1 cut(s)	440
MluNI	TGGCCA	1 cut(s)	87
MnlI	CCTC	7 cut(s)	257, 272, 279, 355, 415, 460, 544
Mox20I	TGGCCA	1 cut(s)	87
MroI	TCCGGA	1 cut(s)	418
MscI	TGGCCA	1 cut(s)	87
MseI	TTAA	1 cut(s)	248
MslI	CAYNNNNRTG	1 cut(s)	135
Msp20I	TGGCCA	1 cut(s)	87
MspI	CCGG	2 cut(s)	111, 419
MspR9I	CCNGG	1 cut(s)	196
MvaI	CCWGG	1 cut(s)	196
MvnI	CGCG	1 cut(s)	145
NdeII	GATC	2 cut(s)	107, 146
NlaIII	CATG	4 cut(s)	67, 134, 165, 539
NruI	TCGCGA	1 cut(s)	145
NspI	RCATGY	1 cut(s)	67
PasI	CCCWGGG	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	140
PkrI	GCNGC	3 cut(s)	62, 541, 575
PpuMI	RGGWCCY	1 cut(s)	266
PshAI	GACNNNNGTC	1 cut(s)	22
Psp5II	RGGWCCY	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	194
PspPI	GGNCC	2 cut(s)	266, 504
PspPPI	RGGWCCY	1 cut(s)	266
PsuI	RGATCY	1 cut(s)	107
RruI	TCGCGA	1 cut(s)	145
RsaI	GTAC	3 cut(s)	37, 68, 401
RsaNI	GTAC	3 cut(s)	36, 67, 400
RseI	CAYNNNNRTG	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	248
SatI	GCNGC	3 cut(s)	61, 540, 574
Sau3AI	GATC	2 cut(s)	107, 146
Sau96I	GGNCC	2 cut(s)	266, 504
ScrFI	CCNGG	1 cut(s)	196
SetI	ASST	5 cut(s)	37, 43, 205, 271, 339
SfaNI	GCATC	2 cut(s)	424, 495
SinI	GGWCC	1 cut(s)	266
SmiMI	CAYNNNNRTG	1 cut(s)	135
SmlI	CTYRAG	1 cut(s)	42
SmoI	CTYRAG	1 cut(s)	42
Sse9I	AATT	1 cut(s)	440
SspMI	CTAG	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	194
TaaI	ACNGT	2 cut(s)	24, 103
TaiI	ACGT	2 cut(s)	205, 339
TasI	AATT	1 cut(s)	440
TatI	WGTACW	1 cut(s)	399
TfiI	GAWTC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TscAI	CASTG	1 cut(s)	27
TseI	GCWGC	3 cut(s)	60, 539, 573
TspDTI	ATGAA	4 cut(s)	68, 267, 436, 524
TspRI	CASTG	1 cut(s)	27
VpaK11BI	GGWCC	1 cut(s)	266
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	1 cut(s)	67
XspI	CTAG	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.