pycom03g00240

YTH domain family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0001378
Physical Location & Seq
Reverse (-)
224010 .. 227799
3790 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g00240.1

Sequence Viewer

Length: 2115 bp
ATGGCCACCGTTGCTCCTCCTGTGGAACAAGCAGCAGATTTGCTACAGAAGATGTCATTAGACTCTCAAACCAAGACTCTGGAAATTCCTGAGCCTACCAAGAAGCCTTCTGTTAACCAATACGGTTCTATTGATTCTGGCAATGCTGCAAATGGACAGATCCCATCAGAGCGCTCTGTTACCCCTTTGTTACCTGATTTTGTGGATCCATCTATGTGCTATCTCCCGAACGGTTATCCGTCTACTGCGTATTACTATGGAGGCTATGATGGGACTGGCAATGAGTGGGATGACTACTCGAGATATGTAAATCCTGAGGGAGTAGAGATGACTTCTGGTGTTTATGGGGACAACGGGTCTCTGTTATACCACCATGGGTATGGGTATGCACCATATGGCCCATATTCTCCGGCGGGTTCCCCTGTTCCGACTATGGGAAATGATGGTCAGTTATATGGACCTCAGCAGTACCAATACCCTCCTTATTTCCAGCCTCTGACTCCAACCAGTGGACCGTACACTCCCAGCCCTGCTGCCCCTCAAACTGATGTCTCCACCTCTGCAGCTGCTGACCAAAAGCCTCTTTCTGTGGAAACAGCAAATGGAATTTCTAACGGCATTTCGAACGGTGGAAGTGTGAAAGGAAATAACGTTTCAGCTCCCTTATCAACATATCAAAACTCATCTTTCAACTCCAATGGTTCATATGGAAGGGGTGCTTTGCCAGGACGTGTTCCTACTCCTGGATACCAAGACCCAAGATTTGGTTTTGATGGCTTGCGTTCTCCCCTTCCATGGTTAGATGCCCCACTTTTTTCAGATGGGCAACCTAGACCAGTGACAAGTACAACAATTACTTCGTCAATCTCCAATGGCAATACCAATTTGTCCTCGAGGAATCAGAATTACCATCCAAATTCTCATTACATGGGTTTGCACCACCCAAGGCCATTGTCAGGAATGGGTACATCTCAAGGGTTTATAAATAGGATGTACCCAAGCAAGCTGTATGGTCACTATGGAAACAAAGATCGATCTGGTATGGGCTTTGGGTCTCATGGTTATGATTCACGAACCAATGGACGCTCATGGCTTGCTGTTGACAACAAGTATAAACCCAGGGGAAGAAATGGTGGCTACTACGGATATGGTAATGAGAACATGGATGGATTAAATGAACTAAACAGGGGACCTCGGGCGAAGAGCACCAAGAATCAAAAGGGATTTGCCCCTAATGCATTAGCAATCAAAGGGCAGGTACCAACAAATCCTAGTAATGATGAGGAAAAGGAAAAAATCAGTGTCCCAGACCGAGAACAATACAACAAAGCAGATTTTCCCGAGGAGTATACCAATGCCAAATTCTTCATCATTAAGTCATACAGTGAGGATGATGTTCATAAGAGCATTAAGTACAATGTTTGGGCCAGTACGCCAAATGGCAACAAGAAGCTTCATGCTGCGTACCAGGAGGCTCAGGAGAAATCTGGTGGCTGCCCTGTTTTTCTTCTCTTTTCGGTCAATACCAGTGGACAGTTTGTTGGCCTTTCCGAGATGTTGGGCCCCGTTGATTTTAACAAGAACTTGGAATACTGGCAGCAAGACAAGTGGAATGGCTGTTTTCCTGTCAAGTGGCATATCGTTAAAGATGTTCCCAACAGTTTGCTGAAGCACATTACTCTTGAAAATAATGAGAACAAGCCTGTTACCAACAGTAGGGACACTCAGGAGGTTAAATTGGAGCCAGGGCTTAAAATAATTAAAATCTTCAAGGAACATATAAGCAAAACTTGCATTCTGGATGACTTTGGGTTCTATGAAGCCCGTCAGAAGACAATCCAGGAGAAGAAGGCTAAGCAACAGCAGTTTCAGAAACAGGTATGGGAAGGAAAAACCAATGATGAGAAGAAAGTGGTGGCAAATGGGCAACTGAAGACTCAAAATTCATTGGAGGTTCCTGCCGAGTTGACCAAGGAATCTGTTCCGGCTGTGAATGGAAGTGAGGACCCGAAAGTTGCAGAAAATGGATCGATTGCATCTGGAGATGCCCCAAAGGGTGCTAAGCCAGTTGTGTCAGAGAAGAGGGTTGTAGCGAACGGGGTTGCGAATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

705

Amino Acids

76.99

Weight (kDa)

7.2

Isoelectric Point (pI)

34.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 453 - 591 3.7e-47 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 983
AbsI CCTCGAGG 1 cut(s) 892
Acc36I ACCTGC 1 cut(s) 1246
Acc65I GGTACC 1 cut(s) 1258
AccB1I GGYRCC 1 cut(s) 1258
AccB7I CCANNNNNTGG 2 cut(s) 509, 764
AccI GTMKAC 2 cut(s) 242, 1349
AciI CCGC 1 cut(s) 413
AclI AACGTT 1 cut(s) 651
AclWI GGATC 4 cut(s) 154, 200, 213, 2035
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 5 cut(s) 84, 606, 916, 1361, 1942
AcuI CTGAAG 2 cut(s) 1688, 1952
AfaI GTAC 9 cut(s) 470, 518, 847, 967, 995, 1260, 1415, 1432, 1466
AfeI AGCGCT 1 cut(s) 173
AfiI CCNNNNNNNGG 7 cut(s) 434, 509, 743, 764, 795, 956, 1716
AflIII ACRYGT 1 cut(s) 730
AgsI TTSAA 3 cut(s) 691, 1685, 1771
AhdI GACNNNNNGTC 1 cut(s) 355
AjiI CACGTC 1 cut(s) 731
AjnI CCWGG 6 cut(s) 724, 742, 1118, 1467, 1744, 1839
AjuI GAANNNNNNNTTGG 2 cut(s) 1346, 1378
AluBI AGCT 4 cut(s) 566, 659, 1006, 1453
AluI AGCT 4 cut(s) 566, 659, 1006, 1453
Alw21I GWGCWC 1 cut(s) 1208
Alw26I GTCTC 3 cut(s) 363, 556, 1059
AlwI GGATC 4 cut(s) 154, 200, 213, 2035
AlwNI CAGNNNCTG 2 cut(s) 496, 569
Ama87I CYCGRG 4 cut(s) 298, 892, 1194, 1340
Aor51HI AGCGCT 1 cut(s) 173
AoxI GGCC 6 cut(s) 3, 397, 947, 1425, 1543, 1561
ApaI GGGCCC 1 cut(s) 1565
ApeKI GCWGC 8 cut(s) 32, 146, 533, 563, 566, 1460, 1494, 1597
ApoI RAATTY 5 cut(s) 84, 606, 916, 1361, 1942
ArsI GACNNNNNNTTYG 2 cut(s) 746, 778
Asp700I GAANNNNTTC 1 cut(s) 1980
Asp718I GGTACC 1 cut(s) 1258
AspLEI GCGC 1 cut(s) 174
AspS9I GGNCC 8 cut(s) 398, 458, 512, 1190, 1425, 1561, 1562, 2005
AsuII TTCGAA 1 cut(s) 623
AvaI CYCGRG 4 cut(s) 298, 892, 1194, 1340
AvaII GGWCC 4 cut(s) 458, 512, 1190, 2005
AxyI CCTNAGG 1 cut(s) 315
BaeGI GKGCMC 1 cut(s) 1565
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 205
BanI GGYRCC 1 cut(s) 1258
BanII GRGCYC 1 cut(s) 1565
BbsI GAAGAC 2 cut(s) 1838, 1940
Bbv12I GWGCWC 1 cut(s) 1208
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 8 cut(s) 44, 133, 520, 553, 575, 1447, 1481, 1609
BccI CCATC 8 cut(s) 172, 217, 263, 437, 767, 815, 918, 1160
BceAI ACGGC 1 cut(s) 631
BciT130I CCWGG 6 cut(s) 726, 744, 1120, 1469, 1746, 1841
BciVI GTATCC 1 cut(s) 740
BcoDI GTCTC 3 cut(s) 363, 556, 1059
BfaI CTAG 2 cut(s) 831, 1272
BfmI CTRYAG 2 cut(s) 44, 561
BfoI RGCGCY 1 cut(s) 175
BfuAI ACCTGC 1 cut(s) 1246
BfuI GTATCC 1 cut(s) 740
BisI GCNGC 8 cut(s) 33, 147, 534, 564, 567, 1461, 1495, 1598
BlpI GCTNAGC 2 cut(s) 1854, 2061
BlsI GCNGC 8 cut(s) 34, 148, 535, 565, 568, 1462, 1496, 1599
Bme1390I CCNGG 6 cut(s) 726, 744, 1120, 1469, 1746, 1841
Bme18I GGWCC 4 cut(s) 458, 512, 1190, 2005
BmeRI GACNNNNNGTC 1 cut(s) 355
BmeT110I CYCGRG 4 cut(s) 298, 892, 1194, 1340
BmgBI CACGTC 1 cut(s) 731
BmgT120I GGNCC 8 cut(s) 398, 458, 512, 1190, 1425, 1561, 1562, 2005
BmiI GGNNCC 9 cut(s) 207, 418, 1191, 1260, 1563, 1564, 1743, 1956, 2007
BmrFI CCNGG 6 cut(s) 726, 744, 1120, 1469, 1746, 1841
BmsI GCATC 3 cut(s) 793, 2035, 2045
BpiI GAAGAC 2 cut(s) 1838, 1940
BpmI CTGGAG 1 cut(s) 2061
Bpu10I CCTNAGC 3 cut(s) 90, 462, 1476
Bpu1102I GCTNAGC 2 cut(s) 1854, 2061
Bpu14I TTCGAA 1 cut(s) 623
BpuEI CTTGAG 1 cut(s) 957
Bsa29I ATCGAT 2 cut(s) 1033, 2030
BsaI GGTCTC 2 cut(s) 363, 1059
BsaJI CCNNGG 9 cut(s) 373, 794, 944, 1118, 1119, 1193, 1341, 1745, 1971
BsaXI ACNNNNNCTCC 1 cut(s) 28
Bsc4I CCNNNNNNNGG 7 cut(s) 434, 509, 743, 764, 795, 956, 1716
Bse1I ACTGG 7 cut(s) 280, 507, 836, 1428, 1527, 1598, 2066
Bse21I CCTNAGG 1 cut(s) 315
Bse3DI GCAATG 2 cut(s) 148, 286
BseBI CCWGG 6 cut(s) 726, 744, 1120, 1469, 1746, 1841
BseCI ATCGAT 2 cut(s) 1033, 2030
BseDI CCNNGG 9 cut(s) 373, 794, 944, 1118, 1119, 1193, 1341, 1745, 1971
BseGI GGATG 6 cut(s) 295, 910, 996, 1171, 1396, 1807
BseLI CCNNNNNNNGG 7 cut(s) 434, 509, 743, 764, 795, 956, 1716
BseMI GCAATG 2 cut(s) 148, 286
BseMII CTCAG 5 cut(s) 81, 306, 476, 1490, 1739
BseNI ACTGG 7 cut(s) 280, 507, 836, 1428, 1527, 1598, 2066
BseRI GAGGAG 2 cut(s) 6, 1358
BseSI GKGCMC 1 cut(s) 1565
BseXI GCAGC 8 cut(s) 44, 133, 520, 553, 575, 1447, 1481, 1609
BseYI CCCAGC 1 cut(s) 524
BshFI GGCC 6 cut(s) 5, 399, 949, 1427, 1545, 1563
BshNI GGYRCC 1 cut(s) 1258
BshVI ATCGAT 2 cut(s) 1033, 2030
BsiHKAI GWGCWC 1 cut(s) 1208
BsiHKCI CYCGRG 4 cut(s) 298, 892, 1194, 1340
BsiSI CCGG 2 cut(s) 410, 1985
BslFI GGGAC 5 cut(s) 286, 362, 1203, 1289, 1733
BslI CCNNNNNNNGG 7 cut(s) 434, 509, 743, 764, 795, 956, 1716
BsmAI GTCTC 3 cut(s) 363, 556, 1059
BsmFI GGGAC 5 cut(s) 286, 362, 1203, 1289, 1733
BsmI GAATGC 1 cut(s) 1794
BsnI GGCC 6 cut(s) 5, 399, 949, 1427, 1545, 1563
Bso31I GGTCTC 2 cut(s) 363, 1059
BsoBI CYCGRG 4 cut(s) 298, 892, 1194, 1340
Bsp119I TTCGAA 1 cut(s) 623
Bsp120I GGGCCC 1 cut(s) 1561
Bsp1286I GDGCHC 2 cut(s) 1208, 1565
Bsp143I GATC 5 cut(s) 159, 205, 1030, 1034, 2027
Bsp1720I GCTNAGC 2 cut(s) 1854, 2061
Bsp19I CCATGG 2 cut(s) 373, 794
BspACI CCGC 1 cut(s) 413
BspANI GGCC 6 cut(s) 5, 399, 949, 1427, 1545, 1563
BspCNI CTCAG 5 cut(s) 82, 307, 475, 1489, 1738
BspDI ATCGAT 2 cut(s) 1033, 2030
BspLI GGNNCC 9 cut(s) 207, 418, 1191, 1260, 1563, 1564, 1743, 1956, 2007
BspMAI CTGCAG 1 cut(s) 565
BspMI ACCTGC 1 cut(s) 1246
BspPI GGATC 4 cut(s) 154, 200, 213, 2035
BspQI GCTCTTC 1 cut(s) 1196
BspT104I TTCGAA 1 cut(s) 623
BspT107I GGYRCC 1 cut(s) 1258
BspTNI GGTCTC 2 cut(s) 363, 1059
BsrDI GCAATG 2 cut(s) 148, 286
BsrI ACTGG 7 cut(s) 280, 507, 836, 1428, 1527, 1598, 2066
BssECI CCNNGG 9 cut(s) 373, 794, 944, 1118, 1119, 1193, 1341, 1745, 1971
BssMI GATC 5 cut(s) 159, 205, 1030, 1034, 2027
BssNAI GTATAC 1 cut(s) 1350
BssT1I CCWWGG 4 cut(s) 373, 794, 944, 1971
Bst1107I GTATAC 1 cut(s) 1350
Bst2UI CCWGG 6 cut(s) 726, 744, 1120, 1469, 1746, 1841
Bst4CI ACNGT 9 cut(s) 10, 125, 233, 516, 629, 1385, 1536, 1661, 1715
Bst6I CTCTTC 2 cut(s) 1196, 2075
BstAPI GCANNNNNTGC 1 cut(s) 1791
BstBI TTCGAA 1 cut(s) 623
BstC8I GCNNGC 3 cut(s) 779, 1004, 1095
BstDEI CTNAG 7 cut(s) 90, 315, 462, 1476, 1725, 1854, 2061
BstDSI CCRYGG 2 cut(s) 373, 794
BstF5I GGATG 6 cut(s) 295, 910, 996, 1171, 1396, 1807
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 5 cut(s) 162, 208, 1033, 1037, 2030
BstMAI GTCTC 3 cut(s) 363, 556, 1059
BstMBI GATC 5 cut(s) 159, 205, 1030, 1034, 2027
BstMWI GCNNNNNNNGC 3 cut(s) 11, 1235, 1791
BstNI CCWGG 6 cut(s) 726, 744, 1120, 1469, 1746, 1841
BstSCI CCNGG 6 cut(s) 724, 742, 1118, 1467, 1744, 1839
BstSFI CTRYAG 2 cut(s) 44, 561
BstSLI GKGCMC 1 cut(s) 1565
BstV1I GCAGC 8 cut(s) 44, 133, 520, 553, 575, 1447, 1481, 1609
BstV2I GAAGAC 2 cut(s) 1838, 1940
BstX2I RGATCY 2 cut(s) 159, 205
BstXI CCANNNNNNTGG 2 cut(s) 79, 380
BstYI RGATCY 2 cut(s) 159, 205
BstZ17I GTATAC 1 cut(s) 1350
Bsu15I ATCGAT 2 cut(s) 1033, 2030
Bsu36I CCTNAGG 1 cut(s) 315
BsuI GTATCC 1 cut(s) 740
BsuRI GGCC 6 cut(s) 5, 399, 949, 1427, 1545, 1563
BsuTUI ATCGAT 2 cut(s) 1033, 2030
BtgI CCRYGG 2 cut(s) 373, 794
BtrI CACGTC 1 cut(s) 731
BtsCI GGATG 6 cut(s) 295, 910, 996, 1171, 1396, 1807
BtsIMutI CAGTG 5 cut(s) 514, 843, 1306, 1390, 1534
BveI ACCTGC 1 cut(s) 1246
Cac8I GCNNGC 3 cut(s) 779, 1004, 1095
CaiI CAGNNNCTG 2 cut(s) 496, 569
CfoI GCGC 1 cut(s) 174
Cfr13I GGNCC 8 cut(s) 398, 458, 512, 1190, 1425, 1561, 1562, 2005
ClaI ATCGAT 2 cut(s) 1033, 2030
CseI GACGC 1 cut(s) 1092
Csp6I GTAC 9 cut(s) 469, 517, 846, 966, 994, 1259, 1414, 1431, 1465
CspCI CAANNNNNGTGG 4 cut(s) 1510, 1545, 1589, 1624
CviAII CATG 7 cut(s) 374, 795, 928, 1058, 1089, 1162, 1457
CviQI GTAC 9 cut(s) 469, 517, 846, 966, 994, 1259, 1414, 1431, 1465
DdeI CTNAG 7 cut(s) 90, 315, 462, 1476, 1725, 1854, 2061
DpnI GATC 5 cut(s) 161, 207, 1032, 1036, 2029
DpnII GATC 5 cut(s) 159, 205, 1030, 1034, 2027
DriI GACNNNNNGTC 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 1196, 2075
Eam1105I GACNNNNNGTC 1 cut(s) 355
EarI CTCTTC 2 cut(s) 1196, 2075
Eco130I CCWWGG 4 cut(s) 373, 794, 944, 1971
Eco24I GRGCYC 1 cut(s) 1565
Eco31I GGTCTC 2 cut(s) 363, 1059
Eco47I GGWCC 4 cut(s) 458, 512, 1190, 2005
Eco47III AGCGCT 1 cut(s) 173
Eco57I CTGAAG 2 cut(s) 1688, 1952
Eco81I CCTNAGG 1 cut(s) 315
Eco88I CYCGRG 4 cut(s) 298, 892, 1194, 1340
EcoO109I RGGNCCY 3 cut(s) 1190, 1562, 2005
EcoRII CCWGG 6 cut(s) 724, 742, 1118, 1467, 1744, 1839
EcoT14I CCWWGG 4 cut(s) 373, 794, 944, 1971
EcoT22I ATGCAT 1 cut(s) 1240
EcoT38I GRGCYC 1 cut(s) 1565
ErhI CCWWGG 4 cut(s) 373, 794, 944, 1971
FaeI CATG 7 cut(s) 377, 798, 931, 1061, 1092, 1165, 1460
FalI AAGNNNNNCTT 4 cut(s) 703, 735, 1774, 1806
FaqI GGGAC 5 cut(s) 286, 362, 1203, 1289, 1733
FatI CATG 7 cut(s) 373, 794, 927, 1057, 1088, 1161, 1456
FauI CCCGC 1 cut(s) 406
FauNDI CATATG 2 cut(s) 394, 706
FblI GTMKAC 2 cut(s) 242, 1349
Fnu4HI GCNGC 8 cut(s) 33, 147, 534, 564, 567, 1461, 1495, 1598
FokI GGATG 6 cut(s) 302, 897, 1003, 1178, 1403, 1814
FriOI GRGCYC 1 cut(s) 1565
Fsp4HI GCNGC 8 cut(s) 33, 147, 534, 564, 567, 1461, 1495, 1598
FspBI CTAG 2 cut(s) 831, 1272
GlaI GCGC 1 cut(s) 173
GluI GCNGC 8 cut(s) 33, 147, 534, 564, 567, 1461, 1495, 1598
GsaI CCCAGC 1 cut(s) 528
GsuI CTGGAG 1 cut(s) 2061
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 6 cut(s) 5, 399, 949, 1427, 1545, 1563
HapII CCGG 2 cut(s) 410, 1985
HgaI GACGC 1 cut(s) 1092
HhaI GCGC 1 cut(s) 174
Hin1II CATG 7 cut(s) 377, 798, 931, 1061, 1092, 1165, 1460
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HincII GTYRAC 3 cut(s) 115, 1102, 1968
HindII GTYRAC 3 cut(s) 115, 1102, 1968
HindIII AAGCTT 1 cut(s) 1451
HinfI GANTC 9 cut(s) 62, 76, 134, 499, 898, 1067, 1213, 1936, 1976
HpaI GTTAAC 1 cut(s) 115
HpaII CCGG 2 cut(s) 410, 1985
Hpy166II GTNNAC 8 cut(s) 115, 243, 512, 519, 1102, 1350, 1532, 1968
Hpy188I TCNGA 9 cut(s) 169, 429, 498, 820, 903, 1552, 1830, 1872, 2077
Hpy8I GTNNAC 8 cut(s) 115, 243, 512, 519, 1102, 1350, 1532, 1968
HpyAV CCTTC 5 cut(s) 117, 705, 800, 1843, 1880
HpyCH4III ACNGT 9 cut(s) 10, 125, 233, 516, 629, 1385, 1536, 1661, 1715
HpyCH4IV ACGT 2 cut(s) 651, 730
HpyCH4V TGCA 8 cut(s) 149, 389, 563, 937, 1238, 1794, 2018, 2036
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 1235, 1791
HpyF3I CTNAG 7 cut(s) 90, 315, 462, 1476, 1725, 1854, 2061
HpySE526I ACGT 2 cut(s) 651, 730
Hsp92II CATG 7 cut(s) 377, 798, 931, 1061, 1092, 1165, 1460
HspAI GCGC 1 cut(s) 172
KpnI GGTACC 1 cut(s) 1262
KspAI GTTAAC 1 cut(s) 115
Kzo9I GATC 5 cut(s) 159, 205, 1030, 1034, 2027
LguI GCTCTTC 1 cut(s) 1196
LmnI GCTCC 3 cut(s) 19, 664, 1741
Lsp1109I GCAGC 8 cut(s) 44, 133, 520, 553, 575, 1447, 1481, 1609
LweI GCATC 3 cut(s) 793, 2035, 2045
MaeI CTAG 2 cut(s) 831, 1272
MaeII ACGT 2 cut(s) 651, 730
MaeIII GTNAC 5 cut(s) 178, 189, 838, 1013, 1705
MalI GATC 5 cut(s) 161, 207, 1032, 1036, 2029
MboI GATC 5 cut(s) 159, 205, 1030, 1034, 2027
MflI RGATCY 2 cut(s) 159, 205
MhlI GDGCHC 2 cut(s) 1208, 1565
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 4 cut(s) 56, 70, 493, 1930
MmeI TCCRAC 2 cut(s) 452, 527
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 1240
MroXI GAANNNNTTC 1 cut(s) 1980
MscI TGGCCA 1 cut(s) 5
MseI TTAA 9 cut(s) 114, 1172, 1374, 1410, 1575, 1644, 1734, 1752, 1761
MslI CAYNNNNRTG 3 cut(s) 214, 378, 1062
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 566
MspI CCGG 2 cut(s) 410, 1985
MspR9I CCNGG 6 cut(s) 726, 744, 1120, 1469, 1746, 1841
Mva1269I GAATGC 1 cut(s) 1794
MvaI CCWGG 6 cut(s) 726, 744, 1120, 1469, 1746, 1841
MwoI GCNNNNNNNGC 3 cut(s) 11, 1235, 1791
NcoI CCATGG 2 cut(s) 373, 794
NdeI CATATG 2 cut(s) 394, 706
NdeII GATC 5 cut(s) 159, 205, 1030, 1034, 2027
NlaIII CATG 7 cut(s) 377, 798, 931, 1061, 1092, 1165, 1460
NlaIV GGNNCC 9 cut(s) 207, 418, 1191, 1260, 1563, 1564, 1743, 1956, 2007
NmeAIII GCCGAG 1 cut(s) 1987
NmuCI GTSAC 2 cut(s) 838, 1013
NsiI ATGCAT 1 cut(s) 1240
NspV TTCGAA 1 cut(s) 623
PaeR7I CTCGAG 2 cut(s) 298, 892
PasI CCCWGGG 1 cut(s) 1119
PciSI GCTCTTC 1 cut(s) 1196
PctI GAATGC 1 cut(s) 1794
PdmI GAANNNNTTC 1 cut(s) 1980
PfeI GAWTC 5 cut(s) 134, 898, 1067, 1213, 1976
PflMI CCANNNNNTGG 2 cut(s) 509, 764
PfoI TCCNGGA 2 cut(s) 742, 1839
PkrI GCNGC 8 cut(s) 34, 148, 535, 565, 568, 1462, 1496, 1599
PleI GAGTC 4 cut(s) 56, 70, 493, 1930
PpsI GAGTC 4 cut(s) 56, 70, 493, 1930
PpuMI RGGWCCY 2 cut(s) 1190, 2005
PsiI TTATAA 1 cut(s) 983
Psp1406I AACGTT 1 cut(s) 651
Psp5II RGGWCCY 2 cut(s) 1190, 2005
Psp6I CCWGG 6 cut(s) 724, 742, 1118, 1467, 1744, 1839
PspFI CCCAGC 1 cut(s) 524
PspGI CCWGG 6 cut(s) 724, 742, 1118, 1467, 1744, 1839
PspN4I GGNNCC 9 cut(s) 207, 418, 1191, 1260, 1563, 1564, 1743, 1956, 2007
PspOMI GGGCCC 1 cut(s) 1561
PspPI GGNCC 8 cut(s) 398, 458, 512, 1190, 1425, 1561, 1562, 2005
PspPPI RGGWCCY 2 cut(s) 1190, 2005
PspXI VCTCGAGB 1 cut(s) 892
PsrI GAACNNNNNNTAC 2 cut(s) 1574, 1606
PstI CTGCAG 1 cut(s) 565
PstNI CAGNNNCTG 2 cut(s) 496, 569
PsuI RGATCY 2 cut(s) 159, 205
PvuII CAGCTG 1 cut(s) 566
RsaI GTAC 9 cut(s) 470, 518, 847, 967, 995, 1260, 1415, 1432, 1466
RsaNI GTAC 9 cut(s) 469, 517, 846, 966, 994, 1259, 1414, 1431, 1465
RseI CAYNNNNRTG 3 cut(s) 214, 378, 1062
SapI GCTCTTC 1 cut(s) 1196
SaqAI TTAA 9 cut(s) 114, 1172, 1374, 1410, 1575, 1644, 1734, 1752, 1761
SatI GCNGC 8 cut(s) 33, 147, 534, 564, 567, 1461, 1495, 1598
Sau3AI GATC 5 cut(s) 159, 205, 1030, 1034, 2027
Sau96I GGNCC 8 cut(s) 398, 458, 512, 1190, 1425, 1561, 1562, 2005
SchI GAGTC 4 cut(s) 56, 70, 493, 1930
ScrFI CCNGG 6 cut(s) 726, 744, 1120, 1469, 1746, 1841
SduI GDGCHC 2 cut(s) 1208, 1565
SfaNI GCATC 3 cut(s) 793, 2035, 2045
SfcI CTRYAG 2 cut(s) 44, 561
Sfr274I CTCGAG 2 cut(s) 298, 892
SfuI TTCGAA 1 cut(s) 623
SinI GGWCC 4 cut(s) 458, 512, 1190, 2005
SlaI CTCGAG 2 cut(s) 298, 892
SmiMI CAYNNNNRTG 3 cut(s) 214, 378, 1062
SmlI CTYRAG 3 cut(s) 298, 892, 972
SmoI CTYRAG 3 cut(s) 298, 892, 972
SsiI CCGC 1 cut(s) 413
SspMI CTAG 2 cut(s) 831, 1272
StyD4I CCNGG 6 cut(s) 724, 742, 1118, 1467, 1744, 1839
StyI CCWWGG 4 cut(s) 373, 794, 944, 1971
TaaI ACNGT 9 cut(s) 10, 125, 233, 516, 629, 1385, 1536, 1661, 1715
TaiI ACGT 2 cut(s) 654, 733
TaqI TCGA 5 cut(s) 299, 623, 893, 1033, 2030
TaqII GACCGA 2 cut(s) 1326, 1507
TatI WGTACW 2 cut(s) 845, 1413
TfiI GAWTC 5 cut(s) 134, 898, 1067, 1213, 1976
Tru1I TTAA 9 cut(s) 114, 1172, 1374, 1410, 1575, 1644, 1734, 1752, 1761
Tru9I TTAA 9 cut(s) 114, 1172, 1374, 1410, 1575, 1644, 1734, 1752, 1761
TscAI CASTG 5 cut(s) 514, 843, 1306, 1390, 1534
TseFI GTSAC 2 cut(s) 838, 1013
TseI GCWGC 8 cut(s) 32, 146, 533, 563, 566, 1460, 1494, 1597
Tsp45I GTSAC 2 cut(s) 838, 1013
TspDTI ATGAA 7 cut(s) 693, 1191, 1357, 1388, 1445, 1833, 1935
TspGWI ACGGA 2 cut(s) 228, 1158
TspRI CASTG 5 cut(s) 514, 843, 1306, 1390, 1534
Van91I CCANNNNNTGG 2 cut(s) 509, 764
VpaK11BI GGWCC 4 cut(s) 458, 512, 1190, 2005
XapI RAATTY 5 cut(s) 84, 606, 916, 1361, 1942
XcmI CCANNNNNNNNNTGG 1 cut(s) 377
XhoI CTCGAG 2 cut(s) 298, 892
XmiI GTMKAC 2 cut(s) 242, 1349
XmnI GAANNNNTTC 1 cut(s) 1980
XspI CTAG 2 cut(s) 831, 1272
Zsp2I ATGCAT 1 cut(s) 1240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.