Rmu_sc0001137.1_g000004

YTH domain family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001137.1
OG0001378
Physical Location & Seq
Reverse (-)
25612 .. 29209
3598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001137.1_g000004.1.cds

Sequence Viewer

Length: 1914 bp
atggctaccgtcgcttcacttccgccgcctgccgatcaagctgcagacttgctgcagaatttgtcattggattctcaggccacggacgccaaaatttctgagcccgccaagaaggccaatgctgtgactactaagctccagtcaactgaccggactaggactacctccccatcactgaaggattcaaccatgccctatcaccctaatggttatgcctcttctgcctattactatggaggatatggtggacttgagtggggcaacaatatgaattctgttgtctatggttatggttatgcaccctataacacatattcaacagcagggtctccaaatgtgggaagtggtcagctatatgaacagcagtatcaatatcctccctattttaagcagctgactcctaaaagtggtacaccctacatacctaattcagctgttccttccaaggggggtgtttccaccactaaggatgctgaccaaaagtcctcgccggtaggaacagctaatgggatatctaatggtattttgtccagtgtggggctgaaggaaaataatctttcagacttctccaaatatcaaaactcatctctgaatgtaaagggttcctatgagggataccctgatgcagtttatggttttgatggtttgatgtctcccataccatggttagaagggtcaacattttcaaatggacaggctaaggggatgaccggaaatacagtcaacagaactccgtcttctaagaatcagatttcccgaccaaattctccatacatgggtttgctgccaaggttggggtacggtttggatacagctcgtggacttagtgggatgtatgccaacgatttatatggtcataactggaacacatatggacttggtatggggtttggatccaatagttttggtatggcaagaaatggatatggttggacctctcttcaaaacaagtataagtctagggggcgtggcagcacctttcgctatggtaaccaggacatagatgggttggaggagttgaacaaaggacctagaggtaggagttataaggccggggtcagtgtggcgttgaataaagctaatgttgagaaggatacaactagcaccattccagagagggagcagcactccggagcagatatccatgattattactcagatgctaagttcttcattataaagtcatatagtgaggatgacgttcataagagtgttaagtataatgtctgggccagcacaccaaatggaaacaagaaacttaatgcagcataccaggaggctcaggagaaagctagtggctgccctgtatttctgctgttctctgtgaatgctagtggtcaattcgttggcctagcggagatggtggggctggttgattttgacaagaatgtggagtattggcaacaagacaagtggactggttgtttccctgttaagtggcacattgtaaaggatgtacccaacagtttgctaaagcacattacccttgaaaacaatgaaaacaaacctgtcacaaacagtagggacactcaagaggtcaagttagaggaggggcttaaattgatcaaactattcaaggatcattctggtaaaacatgccttttggatgattttgagttctatgaagatcggcaaaagacaattgaggaagttaaagcaaagcggcagactcggaagaagaaggtattggaggagaagccaactgatggaagaaatgatgggacagaagaggcactactcaaatcaccagagtcgttgggaactgcattggatttggttaaggaaccaacaccaattgatcagagtgatgaacaaatgaagcctttggagaatggctcagttgcagaagctggagatgacctgaagggtccacaaccaattgttgaagagtctgaggtgattgtaacaaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

637

Amino Acids

69.83

Weight (kDa)

6.03

Isoelectric Point (pI)

34.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1047, 1178
AccB7I CCANNNNNTGG 2 cut(s) 663, 1706
AccIII TCCGGA 1 cut(s) 1130
AciI CCGC 5 cut(s) 23, 26, 105, 1355, 1663
AclWI GGATC 3 cut(s) 888, 901, 1587
AcsI RAATTY 4 cut(s) 58, 93, 271, 763
AcuI CTGAAG 3 cut(s) 197, 563, 1883
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 3 cut(s) 412, 800, 1458
AfiI CCNNNNNNNGG 8 cut(s) 338, 407, 446, 537, 663, 776, 794, 1706
AgsI TTSAA 9 cut(s) 186, 318, 687, 944, 1021, 1072, 1490, 1576, 1886
AhdI GACNNNNNGTC 1 cut(s) 481
AjnI CCWGG 2 cut(s) 993, 1272
AjuI GAANNNNNNNTTGG 4 cut(s) 50, 82, 1670, 1702
Alw26I GTCTC 2 cut(s) 333, 657
AlwI GGATC 3 cut(s) 888, 901, 1587
AlwNI CAGNNNCTG 1 cut(s) 1850
Aor13HI TCCGGA 1 cut(s) 1130
AoxI GGCC 5 cut(s) 78, 114, 1050, 1230, 1348
ApeKI GCWGC 8 cut(s) 41, 52, 391, 784, 972, 1123, 1265, 1299
ApoI RAATTY 4 cut(s) 58, 93, 271, 763
AspS9I GGNCC 4 cut(s) 933, 1028, 1230, 1868
AsuC2I CCSGG 1 cut(s) 1054
AsuHPI GGTGA 3 cut(s) 191, 1737, 1909
AvaII GGWCC 3 cut(s) 933, 1028, 1868
BaeI ACNNNNGTAYC 2 cut(s) 350, 383
BamHI GGATCC 1 cut(s) 893
BanII GRGCYC 1 cut(s) 105
BarI GAAGNNNNNNTAC 2 cut(s) 1719, 1751
BauI CACGAG 1 cut(s) 816
BbsI GAAGAC 1 cut(s) 729
BbvI GCAGC 8 cut(s) 28, 39, 403, 771, 984, 1135, 1277, 1286
BccI CCATC 6 cut(s) 178, 635, 998, 1354, 1700, 1712
BcgI CGANNNNNNTGC 2 cut(s) 23, 57
BciT130I CCWGG 2 cut(s) 995, 1274
BciVI GTATCC 3 cut(s) 608, 802, 1087
BclI TGATCA 2 cut(s) 1563, 1798
BcnI CCSGG 1 cut(s) 1054
BcoDI GTCTC 2 cut(s) 333, 657
BfaI CTAG 7 cut(s) 156, 960, 1032, 1101, 1293, 1332, 1352
BfmI CTRYAG 2 cut(s) 42, 53
BfuI GTATCC 3 cut(s) 608, 802, 1087
BglI GCCNNNNNGGC 1 cut(s) 113
Bme1390I CCNGG 3 cut(s) 995, 1054, 1274
Bme18I GGWCC 3 cut(s) 933, 1028, 1868
BmeRI GACNNNNNGTC 1 cut(s) 481
BmgT120I GGNCC 4 cut(s) 933, 1028, 1230, 1868
BmiI GGNNCC 4 cut(s) 604, 895, 1785, 1869
BmrFI CCNGG 3 cut(s) 995, 1054, 1274
BmsI GCATC 3 cut(s) 460, 613, 1150
BpiI GAAGAC 1 cut(s) 729
BplI GAGNNNNNCTC 4 cut(s) 1112, 1144, 1820, 1852
BpmI CTGGAG 2 cut(s) 122, 1872
Bpu10I CCTNAGC 2 cut(s) 699, 1281
BpuEI CTTGAG 2 cut(s) 272, 1515
BpuMI CCSGG 1 cut(s) 1054
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 333
BsaJI CCNNGG 5 cut(s) 81, 444, 662, 788, 1053
BsaWI WCCGGW 3 cut(s) 150, 710, 1130
Bsc4I CCNNNNNNNGG 8 cut(s) 338, 407, 446, 537, 663, 776, 794, 1706
Bse118I RCCGGY 1 cut(s) 490
Bse1I ACTGG 4 cut(s) 139, 531, 866, 1423
BseAI TCCGGA 1 cut(s) 1130
BseBI CCWGG 2 cut(s) 995, 1274
BseDI CCNNGG 5 cut(s) 81, 444, 662, 788, 1053
BseGI GGATG 6 cut(s) 475, 711, 837, 1201, 1459, 1612
BseLI CCNNNNNNNGG 8 cut(s) 338, 407, 446, 537, 663, 776, 794, 1706
BseMII CTCAG 6 cut(s) 89, 90, 1170, 1295, 1851, 1884
BseNI ACTGG 4 cut(s) 139, 531, 866, 1423
BseRI GAGGAG 3 cut(s) 1028, 1562, 1706
BseXI GCAGC 8 cut(s) 28, 39, 403, 771, 984, 1135, 1277, 1286
BshFI GGCC 5 cut(s) 80, 116, 1052, 1232, 1350
BsiSI CCGG 5 cut(s) 151, 491, 711, 1053, 1131
BslFI GGGAC 2 cut(s) 1538, 1735
BslI CCNNNNNNNGG 8 cut(s) 338, 407, 446, 537, 663, 776, 794, 1706
BsmAI GTCTC 2 cut(s) 333, 657
BsmFI GGGAC 2 cut(s) 1538, 1735
BsmI GAATGC 1 cut(s) 1333
BsnI GGCC 5 cut(s) 80, 116, 1052, 1232, 1350
Bso31I GGTCTC 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 105
Bsp13I TCCGGA 1 cut(s) 1130
Bsp143I GATC 6 cut(s) 34, 893, 1563, 1579, 1627, 1798
Bsp19I CCATGG 1 cut(s) 662
BspACI CCGC 5 cut(s) 23, 26, 105, 1355, 1663
BspANI GGCC 5 cut(s) 80, 116, 1052, 1232, 1350
BspCNI CTCAG 6 cut(s) 88, 91, 1169, 1294, 1850, 1885
BspEI TCCGGA 1 cut(s) 1130
BspLI GGNNCC 4 cut(s) 604, 895, 1785, 1869
BspMAI CTGCAG 2 cut(s) 46, 57
BspPI GGATC 3 cut(s) 888, 901, 1587
BspTNI GGTCTC 1 cut(s) 333
BsrFI RCCGGY 1 cut(s) 490
BsrI ACTGG 4 cut(s) 139, 531, 866, 1423
BssAI RCCGGY 1 cut(s) 490
BssECI CCNNGG 5 cut(s) 81, 444, 662, 788, 1053
BssMI GATC 6 cut(s) 34, 893, 1563, 1579, 1627, 1798
BssNI GRCGYC 1 cut(s) 87
BssSI CACGAG 1 cut(s) 816
BssT1I CCWWGG 3 cut(s) 444, 662, 788
Bst2BI CACGAG 1 cut(s) 816
Bst2UI CCWGG 2 cut(s) 995, 1274
Bst4CI ACNGT 5 cut(s) 10, 721, 803, 1466, 1520
Bst6I CTCTTC 4 cut(s) 223, 945, 1722, 1881
BstACI GRCGYC 1 cut(s) 87
BstC8I GCNNGC 3 cut(s) 30, 105, 1234
BstDSI CCRYGG 2 cut(s) 81, 662
BstEII GGTNACC 1 cut(s) 989
BstF5I GGATG 6 cut(s) 475, 711, 837, 1201, 1459, 1612
BstKTI GATC 6 cut(s) 37, 896, 1566, 1582, 1630, 1801
BstMAI GTCTC 2 cut(s) 333, 657
BstMBI GATC 6 cut(s) 34, 893, 1563, 1579, 1627, 1798
BstMWI GCNNNNNNNGC 6 cut(s) 11, 38, 86, 113, 221, 981
BstNI CCWGG 2 cut(s) 995, 1274
BstNSI RCATGY 1 cut(s) 1599
BstPI GGTNACC 1 cut(s) 989
BstSCI CCNGG 3 cut(s) 993, 1052, 1272
BstSFI CTRYAG 2 cut(s) 42, 53
BstV1I GCAGC 8 cut(s) 28, 39, 403, 771, 984, 1135, 1277, 1286
BstV2I GAAGAC 1 cut(s) 729
BstX2I RGATCY 1 cut(s) 893
BstYI RGATCY 1 cut(s) 893
BsuI GTATCC 3 cut(s) 608, 802, 1087
BsuRI GGCC 5 cut(s) 80, 116, 1052, 1232, 1350
BtgI CCRYGG 2 cut(s) 81, 662
BtsCI GGATG 6 cut(s) 475, 711, 837, 1201, 1459, 1612
BtsIMutI CAGTG 3 cut(s) 173, 538, 1066
Cac8I GCNNGC 3 cut(s) 30, 105, 1234
CaiI CAGNNNCTG 1 cut(s) 1850
Cfr10I RCCGGY 1 cut(s) 490
Cfr13I GGNCC 4 cut(s) 933, 1028, 1230, 1868
CseI GACGC 1 cut(s) 95
Csp6I GTAC 3 cut(s) 411, 799, 1457
CspCI CAANNNNNGTGG 2 cut(s) 1394, 1429
CviAII CATG 5 cut(s) 190, 663, 775, 1145, 1596
CviQI GTAC 3 cut(s) 411, 799, 1457
DpnI GATC 6 cut(s) 36, 895, 1565, 1581, 1629, 1800
DpnII GATC 6 cut(s) 34, 893, 1563, 1579, 1627, 1798
DriI GACNNNNNGTC 1 cut(s) 481
Eam1104I CTCTTC 4 cut(s) 223, 945, 1722, 1881
Eam1105I GACNNNNNGTC 1 cut(s) 481
EarI CTCTTC 4 cut(s) 223, 945, 1722, 1881
EciI GGCGGA 1 cut(s) 12
Eco130I CCWWGG 3 cut(s) 444, 662, 788
Eco24I GRGCYC 1 cut(s) 105
Eco31I GGTCTC 1 cut(s) 333
Eco32I GATATC 2 cut(s) 513, 1141
Eco47I GGWCC 3 cut(s) 933, 1028, 1868
Eco57I CTGAAG 3 cut(s) 197, 563, 1883
Eco91I GGTNACC 1 cut(s) 989
EcoO109I RGGNCCY 1 cut(s) 1028
EcoO65I GGTNACC 1 cut(s) 989
EcoRI GAATTC 1 cut(s) 271
EcoRII CCWGG 2 cut(s) 993, 1272
EcoRV GATATC 2 cut(s) 513, 1141
EcoT14I CCWWGG 3 cut(s) 444, 662, 788
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 3 cut(s) 444, 662, 788
FaeI CATG 5 cut(s) 193, 666, 778, 1148, 1599
FaqI GGGAC 2 cut(s) 1538, 1735
FatI CATG 5 cut(s) 189, 662, 774, 1144, 1595
FauI CCCGC 1 cut(s) 112
FauNDI CATATG 1 cut(s) 871
FbaI TGATCA 2 cut(s) 1563, 1798
FokI GGATG 6 cut(s) 482, 718, 844, 1208, 1466, 1619
FriOI GRGCYC 1 cut(s) 105
FspBI CTAG 7 cut(s) 156, 960, 1032, 1101, 1293, 1332, 1352
GsuI CTGGAG 2 cut(s) 122, 1872
HaeIII GGCC 5 cut(s) 80, 116, 1052, 1232, 1350
HapII CCGG 5 cut(s) 151, 491, 711, 1053, 1131
HgaI GACGC 1 cut(s) 95
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 5 cut(s) 193, 666, 778, 1148, 1599
HincII GTYRAC 3 cut(s) 144, 678, 724
HindII GTYRAC 3 cut(s) 144, 678, 724
HinfI GANTC 7 cut(s) 71, 182, 397, 745, 1669, 1751, 1889
HpaII CCGG 5 cut(s) 151, 491, 711, 1053, 1131
HphI GGTGA 3 cut(s) 191, 1737, 1909
Hpy166II GTNNAC 8 cut(s) 144, 248, 413, 678, 724, 821, 1416, 1871
Hpy188I TCNGA 8 cut(s) 100, 562, 591, 750, 1159, 1674, 1803, 1894
Hpy188III TCNNGA 5 cut(s) 756, 1112, 1131, 1283, 1532
Hpy8I GTNNAC 8 cut(s) 144, 248, 413, 678, 724, 821, 1416, 1871
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 8 cut(s) 106, 172, 450, 538, 665, 1084, 1675, 1858
HpyCH4III ACNGT 5 cut(s) 10, 721, 803, 1466, 1520
HpyCH4IV ACGT 1 cut(s) 1200
HpyCH4V TGCA 7 cut(s) 44, 55, 299, 626, 1265, 1766, 1844
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 38, 86, 113, 221, 981
HpySE526I ACGT 1 cut(s) 1200
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 5 cut(s) 193, 666, 778, 1148, 1599
Kpn2I TCCGGA 1 cut(s) 1130
Ksp22I TGATCA 2 cut(s) 1563, 1798
Kzo9I GATC 6 cut(s) 34, 893, 1563, 1579, 1627, 1798
LmnI GCTCC 3 cut(s) 141, 1120, 1133
Lsp1109I GCAGC 8 cut(s) 28, 39, 403, 771, 984, 1135, 1277, 1286
LweI GCATC 3 cut(s) 460, 613, 1150
MaeI CTAG 7 cut(s) 156, 960, 1032, 1101, 1293, 1332, 1352
MaeII ACGT 1 cut(s) 1200
MaeIII GTNAC 4 cut(s) 124, 989, 1510, 1903
MalI GATC 6 cut(s) 36, 895, 1565, 1581, 1629, 1800
MboI GATC 6 cut(s) 34, 893, 1563, 1579, 1627, 1798
MfeI CAATTG 3 cut(s) 1641, 1794, 1878
MflI RGATCY 1 cut(s) 893
MhlI GDGCHC 1 cut(s) 105
MlyI GAGTC 4 cut(s) 391, 1663, 1760, 1898
MmeI TCCRAC 2 cut(s) 911, 990
MroI TCCGGA 1 cut(s) 1130
MseI TTAA 7 cut(s) 387, 1215, 1260, 1434, 1557, 1653, 1779
MslI CAYNNNNRTG 2 cut(s) 204, 1209
MspA1I CMGCKG 2 cut(s) 394, 434
MspI CCGG 5 cut(s) 151, 491, 711, 1053, 1131
MspR9I CCNGG 3 cut(s) 995, 1054, 1274
MunI CAATTG 3 cut(s) 1641, 1794, 1878
Mva1269I GAATGC 1 cut(s) 1333
MvaI CCWGG 2 cut(s) 995, 1274
MwoI GCNNNNNNNGC 6 cut(s) 11, 38, 86, 113, 221, 981
NciI CCSGG 1 cut(s) 1054
NcoI CCATGG 1 cut(s) 662
NdeI CATATG 1 cut(s) 871
NdeII GATC 6 cut(s) 34, 893, 1563, 1579, 1627, 1798
NlaIII CATG 5 cut(s) 193, 666, 778, 1148, 1599
NlaIV GGNNCC 4 cut(s) 604, 895, 1785, 1869
NmuCI GTSAC 2 cut(s) 124, 1510
NspI RCATGY 1 cut(s) 1599
PctI GAATGC 1 cut(s) 1333
PfeI GAWTC 3 cut(s) 71, 182, 745
PflMI CCANNNNNTGG 2 cut(s) 663, 1706
PleI GAGTC 4 cut(s) 391, 1663, 1759, 1897
PpsI GAGTC 4 cut(s) 391, 1663, 1759, 1897
PpuMI RGGWCCY 1 cut(s) 1028
PsiI TTATAA 2 cut(s) 1047, 1178
Psp5II RGGWCCY 1 cut(s) 1028
Psp6I CCWGG 2 cut(s) 993, 1272
PspEI GGTNACC 1 cut(s) 989
PspGI CCWGG 2 cut(s) 993, 1272
PspN4I GGNNCC 4 cut(s) 604, 895, 1785, 1869
PspPI GGNCC 4 cut(s) 933, 1028, 1230, 1868
PspPPI RGGWCCY 1 cut(s) 1028
PstI CTGCAG 2 cut(s) 46, 57
PstNI CAGNNNCTG 1 cut(s) 1850
PsuI RGATCY 1 cut(s) 893
PvuII CAGCTG 2 cut(s) 394, 434
RsaI GTAC 3 cut(s) 412, 800, 1458
RsaNI GTAC 3 cut(s) 411, 799, 1457
RseI CAYNNNNRTG 2 cut(s) 204, 1209
SaqAI TTAA 7 cut(s) 387, 1215, 1260, 1434, 1557, 1653, 1779
Sau3AI GATC 6 cut(s) 34, 893, 1563, 1579, 1627, 1798
Sau96I GGNCC 4 cut(s) 933, 1028, 1230, 1868
SchI GAGTC 4 cut(s) 391, 1663, 1760, 1898
ScrFI CCNGG 3 cut(s) 995, 1054, 1274
SduI GDGCHC 1 cut(s) 105
SfaNI GCATC 3 cut(s) 460, 613, 1150
SfcI CTRYAG 2 cut(s) 42, 53
SinI GGWCC 3 cut(s) 933, 1028, 1868
SmiMI CAYNNNNRTG 2 cut(s) 204, 1209
SmlI CTYRAG 2 cut(s) 251, 1530
SmoI CTYRAG 2 cut(s) 251, 1530
SsiI CCGC 5 cut(s) 23, 26, 105, 1355, 1663
SspMI CTAG 7 cut(s) 156, 960, 1032, 1101, 1293, 1332, 1352
StyD4I CCNGG 3 cut(s) 993, 1052, 1272
StyI CCWWGG 3 cut(s) 444, 662, 788
TaaI ACNGT 5 cut(s) 10, 721, 803, 1466, 1520
TaiI ACGT 1 cut(s) 1203
TauI GCSGC 2 cut(s) 28, 1666
TfiI GAWTC 3 cut(s) 71, 182, 745
Tru1I TTAA 7 cut(s) 387, 1215, 1260, 1434, 1557, 1653, 1779
Tru9I TTAA 7 cut(s) 387, 1215, 1260, 1434, 1557, 1653, 1779
TscAI CASTG 3 cut(s) 180, 538, 1066
TseFI GTSAC 2 cut(s) 124, 1510
TseI GCWGC 8 cut(s) 41, 52, 391, 784, 972, 1123, 1265, 1299
Tsp45I GTSAC 2 cut(s) 124, 1510
TspDTI ATGAA 8 cut(s) 284, 372, 1162, 1193, 1512, 1638, 1824, 1832
TspGWI ACGGA 2 cut(s) 98, 723
TspRI CASTG 3 cut(s) 180, 538, 1066
Van91I CCANNNNNTGG 2 cut(s) 663, 1706
VpaK11BI GGWCC 3 cut(s) 933, 1028, 1868
XapI RAATTY 4 cut(s) 58, 93, 271, 763
XceI RCATGY 1 cut(s) 1599
XcmI CCANNNNNNNNNTGG 1 cut(s) 1001
XspI CTAG 7 cut(s) 156, 960, 1032, 1101, 1293, 1332, 1352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.