Rmu_co8377747.1_g000001

YTH domain family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8377747.1
OG0001378
Physical Location & Seq
Forward (+)
1 .. 822
822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8377747.1_g000001.1.cds

Sequence Viewer

Length: 715 bp
ttttttaggctatgatgggactggcgactgggatgagtactcgagatatgtgaatccagagggggtagatatgacttccggggtttatggagataacgggtctcttatgtaccaccatggttatgggtatacaccgtatgggccttattcaccagcagcttcccctgttccaactatgggaaatgatggtcaattatatgggcctcaacactaccagtatccgccctatttccagccgctgactccaaccagtgggccatacactcccagtcctgtagcccctcagaatgacgtatccacatctttagctgctgaccaaaagcctctgcctgtggaaacagctaatggaatctctaatggcattgcaaataacggaagtgtgaaaggaaataacgtttcagctcccttatcgacatatcaaaccacatctttcaactccaatggttcatatggacgaggtgctttacctgcacgtgttcctactcctgggtaccaggacccaagatatggttatgacacagtacgttctccaattccttggttagatgccccacttttttcagatgggcagcatagacctgtggcaaatacacccattacttcttcaaactcgaatggcaatagaattccatctttgaggaatcagaactaccgtccaaattctcacttcatggtatggttattttcaatatcttgtttcttttcctgtggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

237

Amino Acids

25.67

Weight (kDa)

5.61

Isoelectric Point (pI)

31.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 476
Acc65I GGTACC 1 cut(s) 490
AccB1I GGYRCC 1 cut(s) 490
AccB7I CCANNNNNTGG 2 cut(s) 252, 507
AccI GTMKAC 1 cut(s) 129
AciI CCGC 2 cut(s) 222, 237
AclI AACGTT 1 cut(s) 394
AcsI RAATTY 2 cut(s) 625, 659
AcvI CACGTG 1 cut(s) 474
AfaI GTAC 4 cut(s) 39, 111, 492, 523
AfiI CCNNNNNNNGG 4 cut(s) 177, 252, 486, 507
AflIII ACRYGT 1 cut(s) 473
AgsI TTSAA 3 cut(s) 434, 607, 688
AjnI CCWGG 2 cut(s) 485, 493
AluBI AGCT 4 cut(s) 159, 309, 342, 402
AluI AGCT 4 cut(s) 159, 309, 342, 402
Alw26I GTCTC 1 cut(s) 106
AlwNI CAGNNNCTG 1 cut(s) 239
Ama87I CYCGRG 1 cut(s) 41
AoxI GGCC 3 cut(s) 141, 201, 255
ApeKI GCWGC 3 cut(s) 156, 309, 569
ApoI RAATTY 2 cut(s) 625, 659
Asp718I GGTACC 1 cut(s) 490
AspS9I GGNCC 4 cut(s) 141, 201, 255, 497
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 142
AvaI CYCGRG 1 cut(s) 41
AvaII GGWCC 1 cut(s) 497
BanI GGYRCC 1 cut(s) 490
BbrPI CACGTG 1 cut(s) 474
BbvI GCAGC 3 cut(s) 168, 296, 581
BccI CCATC 4 cut(s) 9, 180, 558, 638
BciT130I CCWGG 2 cut(s) 487, 495
BciVI GTATCC 2 cut(s) 229, 305
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 106
BfmI CTRYAG 1 cut(s) 274
BfuAI ACCTGC 1 cut(s) 476
BfuI GTATCC 2 cut(s) 229, 305
BisI GCNGC 4 cut(s) 157, 237, 310, 570
BlsI GCNGC 4 cut(s) 158, 238, 311, 571
BmcAI AGTACT 1 cut(s) 39
Bme1390I CCNGG 3 cut(s) 80, 487, 495
Bme18I GGWCC 1 cut(s) 497
BmeT110I CYCGRG 1 cut(s) 41
BmgT120I GGNCC 4 cut(s) 141, 201, 255, 497
BmiI GGNNCC 2 cut(s) 492, 499
BmrFI CCNGG 3 cut(s) 80, 487, 495
BmrI ACTGGG 2 cut(s) 38, 262
BmsI GCATC 1 cut(s) 536
BmuI ACTGGG 2 cut(s) 38, 262
BpuMI CCSGG 1 cut(s) 80
BsaAI YACGTR 1 cut(s) 474
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 4 cut(s) 79, 116, 486, 537
Bsc4I CCNNNNNNNGG 4 cut(s) 177, 252, 486, 507
Bse1I ACTGG 5 cut(s) 26, 33, 215, 250, 268
Bse3DI GCAATG 1 cut(s) 361
BseBI CCWGG 2 cut(s) 487, 495
BseDI CCNNGG 4 cut(s) 79, 116, 486, 537
BseGI GGATG 1 cut(s) 38
BseLI CCNNNNNNNGG 4 cut(s) 177, 252, 486, 507
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 5 cut(s) 26, 33, 215, 250, 268
BseXI GCAGC 3 cut(s) 168, 296, 581
BsgI GTGCAG 1 cut(s) 454
BshFI GGCC 3 cut(s) 143, 203, 257
BshNI GGYRCC 1 cut(s) 490
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 1 cut(s) 79
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 4 cut(s) 177, 252, 486, 507
BsmAI GTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 32
BsnI GGCC 3 cut(s) 143, 203, 257
Bso31I GGTCTC 1 cut(s) 106
BsoBI CYCGRG 1 cut(s) 41
Bsp19I CCATGG 1 cut(s) 116
BspACI CCGC 2 cut(s) 222, 237
BspANI GGCC 3 cut(s) 143, 203, 257
BspCNI CTCAG 1 cut(s) 296
BspLI GGNNCC 2 cut(s) 492, 499
BspMI ACCTGC 1 cut(s) 476
BspT107I GGYRCC 1 cut(s) 490
BspTNI GGTCTC 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 361
BsrI ACTGG 5 cut(s) 26, 33, 215, 250, 268
BssECI CCNNGG 4 cut(s) 79, 116, 486, 537
BssNAI GTATAC 1 cut(s) 130
BssT1I CCWWGG 2 cut(s) 116, 537
Bst1107I GTATAC 1 cut(s) 130
Bst2UI CCWGG 2 cut(s) 487, 495
Bst4CI ACNGT 3 cut(s) 136, 521, 654
BstBAI YACGTR 1 cut(s) 474
BstDEI CTNAG 1 cut(s) 283
BstDSI CCRYGG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 38
BstMAI GTCTC 1 cut(s) 106
BstMWI GCNNNNNNNGC 1 cut(s) 468
BstNI CCWGG 2 cut(s) 487, 495
BstSCI CCNGG 3 cut(s) 78, 485, 493
BstSFI CTRYAG 1 cut(s) 274
BstV1I GCAGC 3 cut(s) 168, 296, 581
BstXI CCANNNNNNTGG 2 cut(s) 123, 538
BstZ17I GTATAC 1 cut(s) 130
BsuI GTATCC 2 cut(s) 229, 305
BsuRI GGCC 3 cut(s) 143, 203, 257
BtgI CCRYGG 1 cut(s) 116
BtsCI GGATG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 257
BveI ACCTGC 1 cut(s) 476
CaiI CAGNNNCTG 1 cut(s) 239
Cfr13I GGNCC 4 cut(s) 141, 201, 255, 497
Csp6I GTAC 4 cut(s) 38, 110, 491, 522
CviAII CATG 2 cut(s) 117, 671
CviQI GTAC 4 cut(s) 38, 110, 491, 522
DdeI CTNAG 1 cut(s) 283
EciI GGCGGA 1 cut(s) 211
Eco130I CCWWGG 2 cut(s) 116, 537
Eco31I GGTCTC 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 497
Eco72I CACGTG 1 cut(s) 474
Eco88I CYCGRG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 497
EcoRI GAATTC 1 cut(s) 625
EcoRII CCWGG 2 cut(s) 485, 493
EcoT14I CCWWGG 2 cut(s) 116, 537
ErhI CCWWGG 2 cut(s) 116, 537
FaeI CATG 2 cut(s) 120, 674
FaqI GGGAC 1 cut(s) 32
FatI CATG 2 cut(s) 116, 670
FauNDI CATATG 1 cut(s) 449
FblI GTMKAC 1 cut(s) 129
Fnu4HI GCNGC 4 cut(s) 157, 237, 310, 570
FokI GGATG 1 cut(s) 45
Fsp4HI GCNGC 4 cut(s) 157, 237, 310, 570
GluI GCNGC 4 cut(s) 157, 237, 310, 570
HaeIII GGCC 3 cut(s) 143, 203, 257
HapII CCGG 1 cut(s) 79
Hin1II CATG 2 cut(s) 120, 674
HinfI GANTC 4 cut(s) 53, 242, 349, 641
HpaII CCGG 1 cut(s) 79
HphI GGTGA 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 3 cut(s) 286, 563, 646
Hpy188III TCNNGA 2 cut(s) 43, 57
Hpy8I GTNNAC 1 cut(s) 130
HpyCH4III ACNGT 3 cut(s) 136, 521, 654
HpyCH4IV ACGT 4 cut(s) 292, 394, 473, 524
HpyCH4V TGCA 2 cut(s) 366, 471
HpyF10VI GCNNNNNNNGC 1 cut(s) 468
HpyF3I CTNAG 1 cut(s) 283
HpySE526I ACGT 4 cut(s) 292, 394, 473, 524
Hsp92II CATG 2 cut(s) 120, 674
KpnI GGTACC 1 cut(s) 494
LmnI GCTCC 1 cut(s) 407
Lsp1109I GCAGC 3 cut(s) 168, 296, 581
LweI GCATC 1 cut(s) 536
MaeII ACGT 4 cut(s) 292, 394, 473, 524
MboII GAAGA 1 cut(s) 595
MluCI AATT 4 cut(s) 192, 532, 625, 659
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 2 cut(s) 195, 270
MnlI CCTC 6 cut(s) 53, 214, 292, 334, 450, 631
MslI CAYNNNNRTG 1 cut(s) 121
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 3 cut(s) 80, 487, 495
MvaI CCWGG 2 cut(s) 487, 495
MwoI GCNNNNNNNGC 1 cut(s) 468
NciI CCSGG 1 cut(s) 80
NcoI CCATGG 1 cut(s) 116
NdeI CATATG 1 cut(s) 449
NlaIII CATG 2 cut(s) 120, 674
NlaIV GGNNCC 2 cut(s) 492, 499
PaeR7I CTCGAG 1 cut(s) 41
PfeI GAWTC 3 cut(s) 53, 349, 641
PflMI CCANNNNNTGG 2 cut(s) 252, 507
PkrI GCNGC 4 cut(s) 158, 238, 311, 571
PleI GAGTC 1 cut(s) 236
PmaCI CACGTG 1 cut(s) 474
PmlI CACGTG 1 cut(s) 474
PpsI GAGTC 1 cut(s) 236
Ppu21I YACGTR 1 cut(s) 474
PpuMI RGGWCCY 1 cut(s) 497
Psp1406I AACGTT 1 cut(s) 394
Psp5II RGGWCCY 1 cut(s) 497
Psp6I CCWGG 2 cut(s) 485, 493
PspCI CACGTG 1 cut(s) 474
PspGI CCWGG 2 cut(s) 485, 493
PspN4I GGNNCC 2 cut(s) 492, 499
PspPI GGNCC 4 cut(s) 141, 201, 255, 497
PspPPI RGGWCCY 1 cut(s) 497
PstNI CAGNNNCTG 1 cut(s) 239
RsaI GTAC 4 cut(s) 39, 111, 492, 523
RsaNI GTAC 4 cut(s) 38, 110, 491, 522
RseI CAYNNNNRTG 1 cut(s) 121
SatI GCNGC 4 cut(s) 157, 237, 310, 570
Sau96I GGNCC 4 cut(s) 141, 201, 255, 497
ScaI AGTACT 1 cut(s) 39
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 3 cut(s) 80, 487, 495
SfaNI GCATC 1 cut(s) 536
SfcI CTRYAG 1 cut(s) 274
Sfr274I CTCGAG 1 cut(s) 41
SinI GGWCC 1 cut(s) 497
SlaI CTCGAG 1 cut(s) 41
SmiMI CAYNNNNRTG 1 cut(s) 121
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 4 cut(s) 192, 532, 625, 659
SsiI CCGC 2 cut(s) 222, 237
StyD4I CCNGG 3 cut(s) 78, 485, 493
StyI CCWWGG 2 cut(s) 116, 537
TaaI ACNGT 3 cut(s) 136, 521, 654
TaiI ACGT 4 cut(s) 295, 397, 476, 527
TaqI TCGA 3 cut(s) 42, 411, 612
TasI AATT 4 cut(s) 192, 532, 625, 659
TatI WGTACW 1 cut(s) 37
TauI GCSGC 1 cut(s) 239
TfiI GAWTC 3 cut(s) 53, 349, 641
TscAI CASTG 1 cut(s) 257
TseI GCWGC 3 cut(s) 156, 309, 569
TspDTI ATGAA 2 cut(s) 436, 659
TspGWI ACGGA 1 cut(s) 388
TspRI CASTG 1 cut(s) 257
Van91I CCANNNNNTGG 2 cut(s) 252, 507
VpaK11BI GGWCC 1 cut(s) 497
XapI RAATTY 2 cut(s) 625, 659
XcmI CCANNNNNNNNNTGG 1 cut(s) 120
XhoI CTCGAG 1 cut(s) 41
XmiI GTMKAC 1 cut(s) 129
ZrmI AGTACT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.