Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0043081.1

Orthogroup ID

OG0001378

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1405

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0043081.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1114 bp

atgaccttgcagggtttgctgccaaggttggggtacggtttggatacagctcgtggacttagtgggatgtatgccaacgatttatatggtcataactggaacacatatggacttggtatggggtttggatccaatagttttggtatggcaagaaatggatatggttggacctctcttcaaaacaagtataagtctagggggcgtggcagcacctttcgctatggtaaccaggacatagatgggttggaggagttgaacaaaggacctagaggtaggagttataaggccggggtcagtgtggcgttgaataaagctaatgttgagaaggatacaactagcaccattccagagagggagcagcactccggagcagatatccatgattattactcagatgctaagttcttcattataaagtcatatagtgaggatgacgttcataagagtgttaagtataatgtctgggccagcacaccaaatggaaacaagaaacttaatgcagcataccaggaggctcaggagaaagctagtggctgccctgtatttctgctgttctctgtgaatgctagtggtcaattcgttggcctagcggagatggtggggctggttgattttgacaagaatgtggagtattggcaacaagacaagtggactggttgtttccctgttaagtggcaccttgtaaaggatgtacccaacagtttgctaaagcacattacccttgaaaacaatgaaaacaaacctgtcacaaacagtagggacactcaagaggtcaagttagaggaggggcttaaattgatcaaactattcaaggatcattctggtaaaacatgccttttggatgattttgagttctatgaagatcggcaaaagacaattgaggaagttaaagcaaagcggcagactcggaagaagaaggtattggaggagaagccaactgatggaagaaatgatgggacagaagaggcacttctcaaatcaccagagtcgttgggaactgcattggatttggttaaggaaccaacaccaattggtcagagtgatgaacaaatgaagcctttggagaatggctcagttgcagaagctggagatgacctgaagggtccacaaccaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

371

Amino Acids

41.46

Weight (kDa)

6.06

Isoelectric Point (pI)

31.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55500 AT1G55500 AT1G55500 AT1G55500 AT1G55500 AT1G55500 AT3G13460 AT3G13460 AT3G13460 AT3G13460
fragaria_vesca	FvH4_3g45840 FvH4_3g45840 FvH4_3g45840 FvH4_3g45840 FvH4_3g45841 FvH4_3g45841 FvH4_3g45841
malus_domestica	MD03G1002400.v1.1 MD03G1002500.v1.1 MD11G1002300.v1.1 MD11G1002400.v1.1
prunus_persica	Prupe.6G002200_v2.0.a1 Prupe.6G002200_v2.0.a1
pyrus_communis	pycom03g00230 pycom03g00240 pycom11g00210 pycom11g00220
rosa_chinensis	RchiOBHm_Chr5g0083931 RchiOBHm_Chr5g0083941
rosa_laevigata	RLG00000037065 RLG00000037066
rosa_multiflora	Rmu_co8176898.1_g000001 Rmu_co8377747.1_g000001 Rmu_co8387395.1_g000001 Rmu_sc0001137.1_g000004 Rmu_sc0001137.1_g000005 Rmu_sc0043081.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000680
rosa_rugosa	Rorug05G0487700 Rorug05G0487700 Rorug05G0487700 Rorug05G0487700 Rorug05G0487700
rosa_samantha	Rh5AG540500 Rh5AG540600 Rh5BG565500 Rh5BG565600 Rh5CG587400 Rh5CG587500 Rh5DG574100 Rh5DG574200
rosa_wichuraiana	Rw5G050260 Rw5G050270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	282, 413
AccB1I	GGYRCC	1 cut(s)	675
AccB7I	CCANNNNNTGG	1 cut(s)	941
AccIII	TCCGGA	1 cut(s)	365
AciI	CCGC	2 cut(s)	590, 898
AclWI	GGATC	3 cut(s)	123, 136, 822
AfaI	GTAC	2 cut(s)	35, 693
AfiI	CCNNNNNNNGG	3 cut(s)	29, 685, 941
AgsI	TTSAA	5 cut(s)	179, 256, 307, 725, 811
AjnI	CCWGG	2 cut(s)	228, 507
AjuI	GAANNNNNNNTTGG	2 cut(s)	905, 937
AluBI	AGCT	4 cut(s)	50, 314, 527, 1085
AluI	AGCT	4 cut(s)	50, 314, 527, 1085
AlwI	GGATC	3 cut(s)	123, 136, 822
AlwNI	CAGNNNCTG	1 cut(s)	1085
Aor13HI	TCCGGA	1 cut(s)	365
AoxI	GGCC	3 cut(s)	285, 465, 583
ApeKI	GCWGC	5 cut(s)	19, 207, 358, 500, 534
AspS9I	GGNCC	4 cut(s)	168, 263, 465, 1103
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	972
AvaII	GGWCC	3 cut(s)	168, 263, 1103
BamHI	GGATCC	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	675
BauI	CACGAG	1 cut(s)	51
BbvI	GCAGC	5 cut(s)	6, 219, 370, 512, 521
BccI	CCATC	4 cut(s)	233, 589, 935, 947
BciT130I	CCWGG	2 cut(s)	230, 509
BciVI	GTATCC	2 cut(s)	37, 322
BclI	TGATCA	1 cut(s)	798
BcnI	CCSGG	1 cut(s)	289
BfaI	CTAG	6 cut(s)	195, 267, 336, 528, 567, 587
BfuI	GTATCC	2 cut(s)	37, 322
BisI	GCNGC	6 cut(s)	20, 208, 359, 501, 535, 899
BlsI	GCNGC	6 cut(s)	21, 209, 360, 502, 536, 900
Bme1390I	CCNGG	3 cut(s)	230, 289, 509
Bme18I	GGWCC	3 cut(s)	168, 263, 1103
BmgT120I	GGNCC	4 cut(s)	168, 263, 465, 1103
BmiI	GGNNCC	4 cut(s)	130, 677, 1020, 1104
BmrFI	CCNGG	3 cut(s)	230, 289, 509
BmsI	GCATC	1 cut(s)	385
BplI	GAGNNNNNCTC	4 cut(s)	347, 379, 1055, 1087
BpmI	CTGGAG	1 cut(s)	1107
Bpu10I	CCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	750
BpuMI	CCSGG	1 cut(s)	289
BsaJI	CCNNGG	2 cut(s)	23, 288
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	3 cut(s)	29, 685, 941
Bse1I	ACTGG	2 cut(s)	101, 658
BseAI	TCCGGA	1 cut(s)	365
BseBI	CCWGG	2 cut(s)	230, 509
BseDI	CCNNGG	2 cut(s)	23, 288
BseGI	GGATG	4 cut(s)	72, 436, 694, 847
BseLI	CCNNNNNNNGG	3 cut(s)	29, 685, 941
BseMII	CTCAG	3 cut(s)	405, 530, 1086
BseNI	ACTGG	2 cut(s)	101, 658
BseRI	GAGGAG	3 cut(s)	263, 797, 941
BseXI	GCAGC	5 cut(s)	6, 219, 370, 512, 521
BshFI	GGCC	3 cut(s)	287, 467, 585
BshNI	GGYRCC	1 cut(s)	675
BsiSI	CCGG	2 cut(s)	288, 366
BslFI	GGGAC	2 cut(s)	773, 970
BslI	CCNNNNNNNGG	3 cut(s)	29, 685, 941
BsmFI	GGGAC	2 cut(s)	773, 970
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	3 cut(s)	287, 467, 585
Bsp13I	TCCGGA	1 cut(s)	365
Bsp143I	GATC	4 cut(s)	128, 798, 814, 862
BspACI	CCGC	2 cut(s)	590, 898
BspANI	GGCC	3 cut(s)	287, 467, 585
BspCNI	CTCAG	3 cut(s)	404, 529, 1085
BspEI	TCCGGA	1 cut(s)	365
BspLI	GGNNCC	4 cut(s)	130, 677, 1020, 1104
BspPI	GGATC	3 cut(s)	123, 136, 822
BspT107I	GGYRCC	1 cut(s)	675
BsrI	ACTGG	2 cut(s)	101, 658
BssECI	CCNNGG	2 cut(s)	23, 288
BssMI	GATC	4 cut(s)	128, 798, 814, 862
BssSI	CACGAG	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	23
Bst2BI	CACGAG	1 cut(s)	51
Bst2UI	CCWGG	2 cut(s)	230, 509
Bst4CI	ACNGT	3 cut(s)	38, 701, 755
Bst6I	CTCTTC	2 cut(s)	180, 957
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	469
BstDEI	CTNAG	5 cut(s)	59, 391, 399, 516, 1072
BstEII	GGTNACC	1 cut(s)	224
BstENI	CCTNNNNNAGG	1 cut(s)	683
BstF5I	GGATG	4 cut(s)	72, 436, 694, 847
BstKTI	GATC	4 cut(s)	131, 801, 817, 865
BstMBI	GATC	4 cut(s)	128, 798, 814, 862
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 216
BstNI	CCWGG	2 cut(s)	230, 509
BstNSI	RCATGY	1 cut(s)	834
BstPI	GGTNACC	1 cut(s)	224
BstSCI	CCNGG	3 cut(s)	228, 287, 507
BstV1I	GCAGC	5 cut(s)	6, 219, 370, 512, 521
BstX2I	RGATCY	1 cut(s)	128
BstYI	RGATCY	1 cut(s)	128
BsuI	GTATCC	2 cut(s)	37, 322
BsuRI	GGCC	3 cut(s)	287, 467, 585
BtsCI	GGATG	4 cut(s)	72, 436, 694, 847
BtsIMutI	CAGTG	1 cut(s)	301
Cac8I	GCNNGC	1 cut(s)	469
CaiI	CAGNNNCTG	1 cut(s)	1085
Cfr13I	GGNCC	4 cut(s)	168, 263, 465, 1103
Csp6I	GTAC	2 cut(s)	34, 692
CspCI	CAANNNNNGTGG	2 cut(s)	629, 664
CviAII	CATG	2 cut(s)	380, 831
CviQI	GTAC	2 cut(s)	34, 692
DdeI	CTNAG	5 cut(s)	59, 391, 399, 516, 1072
DpnI	GATC	4 cut(s)	130, 800, 816, 864
DpnII	GATC	4 cut(s)	128, 798, 814, 862
Eam1104I	CTCTTC	2 cut(s)	180, 957
EarI	CTCTTC	2 cut(s)	180, 957
Eco130I	CCWWGG	1 cut(s)	23
Eco32I	GATATC	1 cut(s)	376
Eco47I	GGWCC	3 cut(s)	168, 263, 1103
Eco91I	GGTNACC	1 cut(s)	224
EcoNI	CCTNNNNNAGG	1 cut(s)	683
EcoO109I	RGGNCCY	1 cut(s)	263
EcoO65I	GGTNACC	1 cut(s)	224
EcoRII	CCWGG	2 cut(s)	228, 507
EcoRV	GATATC	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	23
FaeI	CATG	2 cut(s)	383, 834
FalI	AAGNNNNNCTT	2 cut(s)	954, 986
FaqI	GGGAC	2 cut(s)	773, 970
FatI	CATG	2 cut(s)	379, 830
FauNDI	CATATG	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	798
Fnu4HI	GCNGC	6 cut(s)	20, 208, 359, 501, 535, 899
FokI	GGATG	4 cut(s)	79, 443, 701, 854
Fsp4HI	GCNGC	6 cut(s)	20, 208, 359, 501, 535, 899
FspBI	CTAG	6 cut(s)	195, 267, 336, 528, 567, 587
GluI	GCNGC	6 cut(s)	20, 208, 359, 501, 535, 899
GsuI	CTGGAG	1 cut(s)	1107
HaeIII	GGCC	3 cut(s)	287, 467, 585
HapII	CCGG	2 cut(s)	288, 366
Hin1II	CATG	2 cut(s)	383, 834
HinfI	GANTC	2 cut(s)	904, 986
HpaII	CCGG	2 cut(s)	288, 366
HphI	GGTGA	1 cut(s)	972
Hpy166II	GTNNAC	3 cut(s)	56, 651, 1106
Hpy188I	TCNGA	3 cut(s)	394, 909, 1038
Hpy188III	TCNNGA	4 cut(s)	347, 366, 518, 767
Hpy8I	GTNNAC	3 cut(s)	56, 651, 1106
HpyAV	CCTTC	3 cut(s)	319, 910, 1093
HpyCH4III	ACNGT	3 cut(s)	38, 701, 755
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	4 cut(s)	10, 500, 1001, 1079
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 216
HpyF3I	CTNAG	5 cut(s)	59, 391, 399, 516, 1072
HpySE526I	ACGT	1 cut(s)	435
Hsp92II	CATG	2 cut(s)	383, 834
Kpn2I	TCCGGA	1 cut(s)	365
Ksp22I	TGATCA	1 cut(s)	798
Kzo9I	GATC	4 cut(s)	128, 798, 814, 862
LmnI	GCTCC	2 cut(s)	355, 368
Lsp1109I	GCAGC	5 cut(s)	6, 219, 370, 512, 521
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	6 cut(s)	195, 267, 336, 528, 567, 587
MaeII	ACGT	1 cut(s)	435
MaeIII	GTNAC	2 cut(s)	224, 745
MalI	GATC	4 cut(s)	130, 800, 816, 864
MboI	GATC	4 cut(s)	128, 798, 814, 862
MboII	GAAGA	7 cut(s)	167, 397, 872, 922, 925, 957, 974
MfeI	CAATTG	2 cut(s)	876, 1029
MflI	RGATCY	1 cut(s)	128
MluCI	AATT	4 cut(s)	575, 794, 876, 1029
MlyI	GAGTC	2 cut(s)	898, 995
MmeI	TCCRAC	2 cut(s)	146, 225
MroI	TCCGGA	1 cut(s)	365
MseI	TTAA	6 cut(s)	450, 495, 669, 792, 888, 1014
MslI	CAYNNNNRTG	1 cut(s)	444
MspI	CCGG	2 cut(s)	288, 366
MspR9I	CCNGG	3 cut(s)	230, 289, 509
MunI	CAATTG	2 cut(s)	876, 1029
Mva1269I	GAATGC	1 cut(s)	568
MvaI	CCWGG	2 cut(s)	230, 509
MwoI	GCNNNNNNNGC	2 cut(s)	16, 216
NciI	CCSGG	1 cut(s)	289
NdeI	CATATG	1 cut(s)	106
NdeII	GATC	4 cut(s)	128, 798, 814, 862
NlaIII	CATG	2 cut(s)	383, 834
NlaIV	GGNNCC	4 cut(s)	130, 677, 1020, 1104
NmuCI	GTSAC	1 cut(s)	745
NspI	RCATGY	1 cut(s)	834
PctI	GAATGC	1 cut(s)	568
PflMI	CCANNNNNTGG	1 cut(s)	941
PkrI	GCNGC	6 cut(s)	21, 209, 360, 502, 536, 900
PleI	GAGTC	2 cut(s)	898, 994
PpsI	GAGTC	2 cut(s)	898, 994
PpuMI	RGGWCCY	1 cut(s)	263
PsiI	TTATAA	2 cut(s)	282, 413
Psp5II	RGGWCCY	1 cut(s)	263
Psp6I	CCWGG	2 cut(s)	228, 507
PspEI	GGTNACC	1 cut(s)	224
PspGI	CCWGG	2 cut(s)	228, 507
PspN4I	GGNNCC	4 cut(s)	130, 677, 1020, 1104
PspPI	GGNCC	4 cut(s)	168, 263, 465, 1103
PspPPI	RGGWCCY	1 cut(s)	263
PstNI	CAGNNNCTG	1 cut(s)	1085
PsuI	RGATCY	1 cut(s)	128
RsaI	GTAC	2 cut(s)	35, 693
RsaNI	GTAC	2 cut(s)	34, 692
RseI	CAYNNNNRTG	1 cut(s)	444
SaqAI	TTAA	6 cut(s)	450, 495, 669, 792, 888, 1014
SatI	GCNGC	6 cut(s)	20, 208, 359, 501, 535, 899
Sau3AI	GATC	4 cut(s)	128, 798, 814, 862
Sau96I	GGNCC	4 cut(s)	168, 263, 465, 1103
SchI	GAGTC	2 cut(s)	898, 995
ScrFI	CCNGG	3 cut(s)	230, 289, 509
SfaNI	GCATC	1 cut(s)	385
SinI	GGWCC	3 cut(s)	168, 263, 1103
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	765
SmoI	CTYRAG	1 cut(s)	765
Sse9I	AATT	4 cut(s)	575, 794, 876, 1029
SsiI	CCGC	2 cut(s)	590, 898
SspMI	CTAG	6 cut(s)	195, 267, 336, 528, 567, 587
StyD4I	CCNGG	3 cut(s)	228, 287, 507
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	3 cut(s)	38, 701, 755
TaiI	ACGT	1 cut(s)	438
TasI	AATT	4 cut(s)	575, 794, 876, 1029
TauI	GCSGC	1 cut(s)	901
Tru1I	TTAA	6 cut(s)	450, 495, 669, 792, 888, 1014
Tru9I	TTAA	6 cut(s)	450, 495, 669, 792, 888, 1014
TscAI	CASTG	1 cut(s)	301
TseFI	GTSAC	1 cut(s)	745
TseI	GCWGC	5 cut(s)	19, 207, 358, 500, 534
Tsp45I	GTSAC	1 cut(s)	745
TspDTI	ATGAA	6 cut(s)	397, 428, 747, 873, 1059, 1067
TspRI	CASTG	1 cut(s)	301
Van91I	CCANNNNNTGG	1 cut(s)	941
VpaK11BI	GGWCC	3 cut(s)	168, 263, 1103
XagI	CCTNNNNNAGG	1 cut(s)	683
XceI	RCATGY	1 cut(s)	834
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XspI	CTAG	6 cut(s)	195, 267, 336, 528, 567, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.