Rw5G050260

YTH domain family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001378
Physical Location & Seq
Forward (+)
86835274 .. 86839291
4018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G050260.1

Sequence Viewer

Length: 2133 bp
ATGAACAAAACCCTCTTTTTCCAAAAACCCAAACCCTTGGCGGCTGTTAGACCCGTTGTCTCTCTCTCTCTCCACTCCGGAGTTCAATCCAGGCCGAGTAGAAGATCCAGCTCTCAATTCACGGCCATGGCCACCGTTGCTCCTCCTGCAGATCAAGCAGCAGATTTGCTTCAGAAGTTGTCATTAGATTCTCAGACCAAGACCCTGGAAATTCCAGAGCCTACAAAGAAGCCTTCCGTTAACCAATATGGGTCTATTGATTCTGGCAACGCTGGAAATGGTCAGATCCAATCTGATCGCTCTGTGACTCCACTGTCGACTGATTTCATGGATCAATCTTTCTCCTATCTCCCAAATGGTTATCCATCAACAGCCTATTACTATGGAGGCTATGATGGGACTGGCGACTGGGATGAGTACTCGAGATATGTGAATCCAGAGGGGGTAGATATGACTTCCGGGGTTTATGGAGATAACGGGTCTCTTATGTACCACCATGGTTATGGGTATACACCGTATGGGCCTTATTCACCAGCAGCTTCCCCTGTTCCAACTATGGGAAATGATGGTCAATTATATGGGCCTCAACACTACCAGTATCCGCCCTATTTCCAGCCGCTGACTCCAACCAGTGGGCCATACACTCCCAGTCCTGTAGCCCCTCAGAATGACGTATCCACATCTTTAGCTGCTGACCAAAAGCCTCTGCCTGTGGAAACAGCTAATGGAATCTCTAATGGCATTGCAAATAACGGAAGTGTGAAAGGAAATAACGTTTCAGCTCCCTTATCGACATATCAAACCACATCTTTCAACTCCAATGGTTCATATGGACGAGGTGCTTTACCTGCACGTGTTCCTACTCCTGGGTACCAGGACCCAAGATATGGTTATGACACAGTACGTTCTCCAATTCCTTGGTTAGATGCCCCACTTTTTTCAGATGGGCAGCATAGACCTGGTTTGCACCACCCAAGACCACTGTCAGGAATAGGTACAGCTCAAGGGTTTATGAATAGCAGCATGTACCCAAGCAAGTTATTTGGGCAGTATGGAAACACAGTTAGATCCGGTCTGGGATTTGGGTCTCATGGTTATGATTCGCGATCCAATGGACGCACATGGCTGGCTGTTGACAACAAGTATAAACAACCCAGGGGACGTAATGGTGGTTACTATGGATATGGTAATGAGAACTCGGATGGTTTAAATGAACTCAACAGAGGACCTCGGGCGAGAGGCTCAAAGAACCAAAAGAGTTTTCCCCCTAGTGCATTGGCTATCAAGGGACAGAACGTGCCAGCAAATCTTAGTAATGATGAGGAAAAGGATACAAGTTCTGTTCCAGACAGAGAGCAGTACAACAAAGCAGATTTTCCGGAGGATTATACTGATGCCAAATTTTTCATCATCAAGTCATATAGTGAGGATGATGTCCATAAAAGCATCAAATATAATGTTTGGGCCAGCACACCAAATGGCAACAAGAAGCTTCATGCAGCATATCAGGAGCTCAGGAGAAGACTGGTCAATACCAGTGGGCAATTTGTGGGTGTCGCTGAGATGTTGGGGCCTGTTGATTTTAACAAGAATTTGGAGTACTGGCAGCAAGACAAATGGAATGGCTGTTTCTCTGTCAAGTGGCATGTTGTTAAAGATGTTCCTAACAGTTTGCTGAAGCATATTACTCTTGAAAATAATGAGAACAAGCCTGTGACTAATAGTAGGGACACTCAAGAGGTTAAGTTGGAACCAGGGCTTAAAATGATAAAAATATTCAAGGAGCATTCAAGCAAAACATGCATTTTGGATGACTTTGGATTTTATGAGTCCCGCCAGAAGACAATTCAGGAGAAGAAGGCTAAGCAACAGCAGCAGTTTCAGAAGCAGGTATGGGAAGGAAAAACCCTCGATGAGAAGAAAGAGGTGGTGACAAATGGGCACGTCAAAACACCAAATTCATCGGATGTTCCCTTTGAGATAACTAAGGAGTCCATCTCAATAGTGCATGCCAGCGAGGAGCTGAAACCTGCAGAAAATGGATCAATTGCAACTGGAGAAGCCCCAAAGGGTGCTAAGCCGGTTGTGGCTGAGAAGAAGGTTGTAGCAAATGGGGTTGCAAACGGTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

710

Amino Acids

77.98

Weight (kDa)

8.58

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 466 - 594 6.7e-41 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 313
Acc36I ACCTGC 3 cut(s) 856, 1879, 2038
Acc65I GGTACC 1 cut(s) 870
AccB1I GGYRCC 1 cut(s) 870
AccB7I CCANNNNNTGG 2 cut(s) 632, 887
AccI GTMKAC 2 cut(s) 317, 509
AccII CGCG 1 cut(s) 1105
AccIII TCCGGA 2 cut(s) 77, 1378
AciI CCGC 4 cut(s) 41, 602, 617, 1834
AclI AACGTT 1 cut(s) 774
AclWI GGATC 6 cut(s) 99, 280, 339, 1062, 1101, 2050
AcoI YGGCCR 2 cut(s) 123, 129
AcsI RAATTY 4 cut(s) 210, 1400, 1591, 1957
AcuI CTGAAG 2 cut(s) 155, 1697
AcvI CACGTG 1 cut(s) 854
AfaI GTAC 8 cut(s) 419, 491, 872, 903, 997, 1028, 1361, 1601
AfiI CCNNNNNNNGG 5 cut(s) 557, 632, 866, 887, 986
AflIII ACRYGT 1 cut(s) 853
AgsI TTSAA 5 cut(s) 86, 814, 1694, 1780, 1791
AhdI GACNNNNNGTC 1 cut(s) 56
AjiI CACGTC 1 cut(s) 1945
AjnI CCWGG 7 cut(s) 89, 204, 865, 873, 958, 1154, 1753
AjuI GAANNNNNNNTTGG 2 cut(s) 1245, 1277
AluBI AGCT 9 cut(s) 111, 539, 689, 722, 782, 1001, 1492, 1513, 2023
AluI AGCT 9 cut(s) 111, 539, 689, 722, 782, 1001, 1492, 1513, 2023
Alw21I GWGCWC 1 cut(s) 1515
Alw26I GTCTC 3 cut(s) 64, 486, 1092
AlwI GGATC 6 cut(s) 99, 280, 339, 1062, 1101, 2050
AlwNI CAGNNNCTG 1 cut(s) 619
Ama87I CYCGRG 2 cut(s) 421, 1230
Aor13HI TCCGGA 2 cut(s) 77, 1378
AoxI GGCC 8 cut(s) 92, 123, 129, 521, 581, 635, 1464, 1571
ApeKI GCWGC 8 cut(s) 158, 536, 689, 949, 1020, 1499, 1606, 1873
ApoI RAATTY 4 cut(s) 210, 1400, 1591, 1957
Asp718I GGTACC 1 cut(s) 870
AspS9I GGNCC 7 cut(s) 521, 581, 635, 877, 1226, 1464, 1571
AsuC2I CCSGG 1 cut(s) 460
AsuHPI GGTGA 2 cut(s) 522, 1942
AvaI CYCGRG 2 cut(s) 421, 1230
AvaII GGWCC 2 cut(s) 877, 1226
BaeGI GKGCMC 1 cut(s) 1944
BalI TGGCCA 1 cut(s) 131
BanI GGYRCC 1 cut(s) 870
BanII GRGCYC 1 cut(s) 1515
BbrPI CACGTG 1 cut(s) 854
BbsI GAAGAC 2 cut(s) 1528, 1847
Bbv12I GWGCWC 1 cut(s) 1515
BbvI GCAGC 8 cut(s) 170, 548, 676, 961, 1032, 1511, 1618, 1885
BccI CCATC 6 cut(s) 373, 389, 560, 938, 1196, 2003
BceAI ACGGC 1 cut(s) 138
BciT130I CCWGG 7 cut(s) 91, 206, 867, 875, 960, 1156, 1755
BciVI GTATCC 3 cut(s) 609, 685, 1324
BcnI CCSGG 1 cut(s) 460
BcoDI GTCTC 3 cut(s) 64, 486, 1092
BfaI CTAG 2 cut(s) 1269, 2131
BfmI CTRYAG 3 cut(s) 147, 654, 2031
BfuAI ACCTGC 3 cut(s) 856, 1879, 2038
BfuI GTATCC 3 cut(s) 609, 685, 1324
BlpI GCTNAGC 2 cut(s) 1863, 2076
BmcAI AGTACT 2 cut(s) 419, 1601
Bme1390I CCNGG 8 cut(s) 91, 206, 460, 867, 875, 960, 1156, 1755
Bme18I GGWCC 2 cut(s) 877, 1226
BmeRI GACNNNNNGTC 1 cut(s) 56
BmeT110I CYCGRG 2 cut(s) 421, 1230
BmgBI CACGTC 1 cut(s) 1945
BmgT120I GGNCC 7 cut(s) 521, 581, 635, 877, 1226, 1464, 1571
BmiI GGNNCC 4 cut(s) 872, 879, 1572, 1752
BmrFI CCNGG 8 cut(s) 91, 206, 460, 867, 875, 960, 1156, 1755
BmrI ACTGGG 2 cut(s) 418, 642
BmsI GCATC 3 cut(s) 916, 1384, 1455
BmuI ACTGGG 2 cut(s) 418, 642
BoxI GACNNNNGTC 1 cut(s) 982
BpiI GAAGAC 2 cut(s) 1528, 1847
BplI GAGNNNNNCTC 2 cut(s) 1982, 2014
BpmI CTGGAG 1 cut(s) 2076
Bpu10I CCTNAGC 1 cut(s) 1514
Bpu1102I GCTNAGC 2 cut(s) 1863, 2076
BpuEI CTTGAG 2 cut(s) 987, 1719
BpuMI CCSGG 1 cut(s) 460
BsaAI YACGTR 1 cut(s) 854
BsaI GGTCTC 2 cut(s) 486, 1092
BsaWI WCCGGW 3 cut(s) 77, 1070, 1378
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 5 cut(s) 557, 632, 866, 887, 986
Bse118I RCCGGY 1 cut(s) 2080
Bse1I ACTGG 9 cut(s) 406, 413, 595, 630, 648, 1530, 1536, 1607, 2059
Bse3DI GCAATG 1 cut(s) 741
BseAI TCCGGA 2 cut(s) 77, 1378
BseBI CCWGG 7 cut(s) 91, 206, 867, 875, 960, 1156, 1755
BseGI GGATG 5 cut(s) 418, 1207, 1435, 1816, 1972
BseLI CCNNNNNNNGG 5 cut(s) 557, 632, 866, 887, 986
BseMI GCAATG 1 cut(s) 741
BseMII CTCAG 5 cut(s) 206, 677, 1528, 1551, 2082
BseNI ACTGG 9 cut(s) 406, 413, 595, 630, 648, 1530, 1536, 1607, 2059
BseRI GAGGAG 2 cut(s) 132, 2033
BseSI GKGCMC 1 cut(s) 1944
BseXI GCAGC 8 cut(s) 170, 548, 676, 961, 1032, 1511, 1618, 1885
BsgI GTGCAG 1 cut(s) 834
Bsh1236I CGCG 1 cut(s) 1105
BshFI GGCC 8 cut(s) 94, 125, 131, 523, 583, 637, 1466, 1573
BshNI GGYRCC 1 cut(s) 870
BsiHKAI GWGCWC 1 cut(s) 1515
BsiHKCI CYCGRG 2 cut(s) 421, 1230
BsiSI CCGG 5 cut(s) 78, 459, 1071, 1379, 2081
BslFI GGGAC 5 cut(s) 412, 1173, 1302, 1742, 1816
BslI CCNNNNNNNGG 5 cut(s) 557, 632, 866, 887, 986
BsmAI GTCTC 3 cut(s) 64, 486, 1092
BsmFI GGGAC 5 cut(s) 412, 1173, 1302, 1742, 1816
BsmI GAATGC 1 cut(s) 1786
BsnI GGCC 8 cut(s) 94, 125, 131, 523, 583, 637, 1466, 1573
Bso31I GGTCTC 2 cut(s) 486, 1092
BsoBI CYCGRG 2 cut(s) 421, 1230
Bsp1286I GDGCHC 2 cut(s) 1515, 1944
Bsp13I TCCGGA 2 cut(s) 77, 1378
Bsp143I GATC 8 cut(s) 104, 151, 285, 295, 331, 1067, 1106, 2042
Bsp1720I GCTNAGC 2 cut(s) 1863, 2076
Bsp19I CCATGG 2 cut(s) 126, 496
Bsp68I TCGCGA 1 cut(s) 1105
BspACI CCGC 4 cut(s) 41, 602, 617, 1834
BspANI GGCC 8 cut(s) 94, 125, 131, 523, 583, 637, 1466, 1573
BspCNI CTCAG 5 cut(s) 205, 676, 1527, 1552, 2083
BspEI TCCGGA 2 cut(s) 77, 1378
BspFNI CGCG 1 cut(s) 1105
BspLI GGNNCC 4 cut(s) 872, 879, 1572, 1752
BspMAI CTGCAG 2 cut(s) 151, 2035
BspMI ACCTGC 3 cut(s) 856, 1879, 2038
BspPI GGATC 6 cut(s) 99, 280, 339, 1062, 1101, 2050
BspT107I GGYRCC 1 cut(s) 870
BspTNI GGTCTC 2 cut(s) 486, 1092
BsrDI GCAATG 1 cut(s) 741
BsrFI RCCGGY 1 cut(s) 2080
BsrI ACTGG 9 cut(s) 406, 413, 595, 630, 648, 1530, 1536, 1607, 2059
BssAI RCCGGY 1 cut(s) 2080
BssMI GATC 8 cut(s) 104, 151, 285, 295, 331, 1067, 1106, 2042
BssNAI GTATAC 1 cut(s) 510
BssT1I CCWWGG 4 cut(s) 36, 126, 496, 917
Bst1107I GTATAC 1 cut(s) 510
Bst2UI CCWGG 7 cut(s) 91, 206, 867, 875, 960, 1156, 1755
Bst4CI ACNGT 8 cut(s) 136, 315, 516, 901, 984, 1063, 1670, 2126
BstAPI GCANNNNNTGC 1 cut(s) 1800
BstBAI YACGTR 1 cut(s) 854
BstC8I GCNNGC 5 cut(s) 1128, 1302, 1468, 2010, 2014
BstDEI CTNAG 9 cut(s) 192, 663, 1310, 1514, 1560, 1863, 1986, 2076, 2091
BstDSI CCRYGG 2 cut(s) 126, 496
BstF5I GGATG 5 cut(s) 418, 1207, 1435, 1816, 1972
BstFNI CGCG 1 cut(s) 1105
BstKTI GATC 8 cut(s) 107, 154, 288, 298, 334, 1070, 1109, 2045
BstMAI GTCTC 3 cut(s) 64, 486, 1092
BstMBI GATC 8 cut(s) 104, 151, 285, 295, 331, 1067, 1106, 2042
BstMWI GCNNNNNNNGC 6 cut(s) 137, 146, 155, 848, 1800, 1873
BstNI CCWGG 7 cut(s) 91, 206, 867, 875, 960, 1156, 1755
BstNSI RCATGY 4 cut(s) 1027, 1649, 1803, 2012
BstPAI GACNNNNGTC 1 cut(s) 982
BstSCI CCNGG 8 cut(s) 89, 204, 458, 865, 873, 958, 1154, 1753
BstSFI CTRYAG 3 cut(s) 147, 654, 2031
BstSLI GKGCMC 1 cut(s) 1944
BstUI CGCG 1 cut(s) 1105
BstV1I GCAGC 8 cut(s) 170, 548, 676, 961, 1032, 1511, 1618, 1885
BstV2I GAAGAC 2 cut(s) 1528, 1847
BstX2I RGATCY 3 cut(s) 104, 285, 1067
BstXI CCANNNNNNTGG 4 cut(s) 37, 205, 503, 918
BstYI RGATCY 3 cut(s) 104, 285, 1067
BstZ17I GTATAC 1 cut(s) 510
BsuI GTATCC 3 cut(s) 609, 685, 1324
BsuRI GGCC 8 cut(s) 94, 125, 131, 523, 583, 637, 1466, 1573
BtgI CCRYGG 2 cut(s) 126, 496
BtrI CACGTC 1 cut(s) 1945
BtsCI GGATG 5 cut(s) 418, 1207, 1435, 1816, 1972
BtsIMutI CAGTG 4 cut(s) 311, 637, 980, 1543
BtuMI TCGCGA 1 cut(s) 1105
BveI ACCTGC 3 cut(s) 856, 1879, 2038
Cac8I GCNNGC 5 cut(s) 1128, 1302, 1468, 2010, 2014
CaiI CAGNNNCTG 1 cut(s) 619
Cfr10I RCCGGY 1 cut(s) 2080
Cfr13I GGNCC 7 cut(s) 521, 581, 635, 877, 1226, 1464, 1571
CseI GACGC 1 cut(s) 1125
CsiI ACCWGGT 1 cut(s) 958
Csp6I GTAC 8 cut(s) 418, 490, 871, 902, 996, 1027, 1360, 1600
CspCI CAANNNNNGTGG 2 cut(s) 1519, 1554
CviQI GTAC 8 cut(s) 418, 490, 871, 902, 996, 1027, 1360, 1600
DdeI CTNAG 9 cut(s) 192, 663, 1310, 1514, 1560, 1863, 1986, 2076, 2091
DpnI GATC 8 cut(s) 106, 153, 287, 297, 333, 1069, 1108, 2044
DpnII GATC 8 cut(s) 104, 151, 285, 295, 331, 1067, 1106, 2042
DraI TTTAAA 1 cut(s) 1209
DrdI GACNNNNNNGTC 1 cut(s) 313
DriI GACNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 313
EaeI YGGCCR 2 cut(s) 123, 129
Eam1105I GACNNNNNGTC 1 cut(s) 56
EciI GGCGGA 1 cut(s) 591
Ecl136II GAGCTC 1 cut(s) 1513
Eco130I CCWWGG 4 cut(s) 36, 126, 496, 917
Eco24I GRGCYC 1 cut(s) 1515
Eco31I GGTCTC 2 cut(s) 486, 1092
Eco47I GGWCC 2 cut(s) 877, 1226
Eco53kI GAGCTC 1 cut(s) 1513
Eco57I CTGAAG 2 cut(s) 155, 1697
Eco72I CACGTG 1 cut(s) 854
Eco88I CYCGRG 2 cut(s) 421, 1230
EcoICRI GAGCTC 1 cut(s) 1513
EcoO109I RGGNCCY 3 cut(s) 877, 1226, 1571
EcoRII CCWGG 7 cut(s) 89, 204, 865, 873, 958, 1154, 1753
EcoT14I CCWWGG 4 cut(s) 36, 126, 496, 917
EcoT22I ATGCAT 1 cut(s) 1805
EcoT38I GRGCYC 1 cut(s) 1515
ErhI CCWWGG 4 cut(s) 36, 126, 496, 917
FaqI GGGAC 5 cut(s) 412, 1173, 1302, 1742, 1816
FauI CCCGC 1 cut(s) 1841
FauNDI CATATG 1 cut(s) 829
FblI GTMKAC 2 cut(s) 317, 509
FokI GGATG 5 cut(s) 425, 1214, 1442, 1823, 1979
FriOI GRGCYC 1 cut(s) 1515
FspBI CTAG 2 cut(s) 1269, 2131
GsuI CTGGAG 1 cut(s) 2076
HaeIII GGCC 8 cut(s) 94, 125, 131, 523, 583, 637, 1466, 1573
HapII CCGG 5 cut(s) 78, 459, 1071, 1379, 2081
HgaI GACGC 1 cut(s) 1125
HincII GTYRAC 3 cut(s) 241, 318, 1135
HindII GTYRAC 3 cut(s) 241, 318, 1135
HindIII AAGCTT 1 cut(s) 1490
HinfI GANTC 9 cut(s) 188, 260, 307, 433, 622, 729, 1100, 1829, 1991
HpaI GTTAAC 1 cut(s) 241
HpaII CCGG 5 cut(s) 78, 459, 1071, 1379, 2081
HphI GGTGA 2 cut(s) 522, 1942
Hpy166II GTNNAC 4 cut(s) 241, 318, 510, 1135
Hpy188I TCNGA 9 cut(s) 174, 195, 285, 295, 666, 943, 1201, 1884, 1966
Hpy8I GTNNAC 4 cut(s) 241, 318, 510, 1135
HpyAV CCTTC 4 cut(s) 243, 1852, 1892, 2092
HpyCH4III ACNGT 8 cut(s) 136, 315, 516, 901, 984, 1063, 1670, 2126
HpyCH4IV ACGT 7 cut(s) 672, 774, 853, 904, 1162, 1296, 1944
HpyF10VI GCNNNNNNNGC 6 cut(s) 137, 146, 155, 848, 1800, 1873
HpyF3I CTNAG 9 cut(s) 192, 663, 1310, 1514, 1560, 1863, 1986, 2076, 2091
HpySE526I ACGT 7 cut(s) 672, 774, 853, 904, 1162, 1296, 1944
Kpn2I TCCGGA 2 cut(s) 77, 1378
KpnI GGTACC 1 cut(s) 874
KspAI GTTAAC 1 cut(s) 241
Kzo9I GATC 8 cut(s) 104, 151, 285, 295, 331, 1067, 1106, 2042
LmnI GCTCC 5 cut(s) 145, 787, 1510, 1783, 2020
Lsp1109I GCAGC 8 cut(s) 170, 548, 676, 961, 1032, 1511, 1618, 1885
LweI GCATC 3 cut(s) 916, 1384, 1455
MabI ACCWGGT 1 cut(s) 958
MaeI CTAG 2 cut(s) 1269, 2131
MaeII ACGT 7 cut(s) 672, 774, 853, 904, 1162, 1296, 1944
MaeIII GTNAC 4 cut(s) 304, 1172, 1714, 1930
MalI GATC 8 cut(s) 106, 153, 287, 297, 333, 1069, 1108, 2044
MboI GATC 8 cut(s) 104, 151, 285, 295, 331, 1067, 1106, 2042
MboII GAAGA 6 cut(s) 114, 1533, 1852, 1867, 1930, 2107
MfeI CAATTG 1 cut(s) 2046
MflI RGATCY 3 cut(s) 104, 285, 1067
MhlI GDGCHC 2 cut(s) 1515, 1944
MlsI TGGCCA 1 cut(s) 131
MluNI TGGCCA 1 cut(s) 131
MlyI GAGTC 4 cut(s) 301, 616, 1838, 2000
MmeI TCCRAC 3 cut(s) 575, 650, 1728
Mox20I TGGCCA 1 cut(s) 131
Mph1103I ATGCAT 1 cut(s) 1805
MroI TCCGGA 2 cut(s) 77, 1378
MscI TGGCCA 1 cut(s) 131
MseI TTAA 6 cut(s) 240, 1208, 1584, 1653, 1743, 1761
MslI CAYNNNNRTG 3 cut(s) 125, 501, 1095
Msp20I TGGCCA 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 619
MspI CCGG 5 cut(s) 78, 459, 1071, 1379, 2081
MspR9I CCNGG 8 cut(s) 91, 206, 460, 867, 875, 960, 1156, 1755
MunI CAATTG 1 cut(s) 2046
Mva1269I GAATGC 1 cut(s) 1786
MvaI CCWGG 7 cut(s) 91, 206, 867, 875, 960, 1156, 1755
MvnI CGCG 1 cut(s) 1105
MwoI GCNNNNNNNGC 6 cut(s) 137, 146, 155, 848, 1800, 1873
NciI CCSGG 1 cut(s) 460
NcoI CCATGG 2 cut(s) 126, 496
NdeI CATATG 1 cut(s) 829
NdeII GATC 8 cut(s) 104, 151, 285, 295, 331, 1067, 1106, 2042
NlaIV GGNNCC 4 cut(s) 872, 879, 1572, 1752
NmeAIII GCCGAG 1 cut(s) 120
NmuCI GTSAC 3 cut(s) 304, 1714, 1930
NruI TCGCGA 1 cut(s) 1105
NsiI ATGCAT 1 cut(s) 1805
NspI RCATGY 4 cut(s) 1027, 1649, 1803, 2012
PaeI GCATGC 1 cut(s) 2012
PaeR7I CTCGAG 1 cut(s) 421
PasI CCCWGGG 1 cut(s) 1155
PctI GAATGC 1 cut(s) 1786
PfeI GAWTC 5 cut(s) 188, 260, 433, 729, 1100
PflMI CCANNNNNTGG 2 cut(s) 632, 887
PleI GAGTC 4 cut(s) 301, 616, 1837, 1999
PmaCI CACGTG 1 cut(s) 854
PmlI CACGTG 1 cut(s) 854
PpsI GAGTC 4 cut(s) 301, 616, 1837, 1999
Ppu21I YACGTR 1 cut(s) 854
PpuMI RGGWCCY 2 cut(s) 877, 1226
PshAI GACNNNNGTC 1 cut(s) 982
Psp124BI GAGCTC 1 cut(s) 1515
Psp1406I AACGTT 1 cut(s) 774
Psp5II RGGWCCY 2 cut(s) 877, 1226
Psp6I CCWGG 7 cut(s) 89, 204, 865, 873, 958, 1154, 1753
PspCI CACGTG 1 cut(s) 854
PspGI CCWGG 7 cut(s) 89, 204, 865, 873, 958, 1154, 1753
PspN4I GGNNCC 4 cut(s) 872, 879, 1572, 1752
PspPI GGNCC 7 cut(s) 521, 581, 635, 877, 1226, 1464, 1571
PspPPI RGGWCCY 2 cut(s) 877, 1226
PstI CTGCAG 2 cut(s) 151, 2035
PstNI CAGNNNCTG 1 cut(s) 619
PsuI RGATCY 3 cut(s) 104, 285, 1067
RruI TCGCGA 1 cut(s) 1105
RsaI GTAC 8 cut(s) 419, 491, 872, 903, 997, 1028, 1361, 1601
RsaNI GTAC 8 cut(s) 418, 490, 871, 902, 996, 1027, 1360, 1600
RseI CAYNNNNRTG 3 cut(s) 125, 501, 1095
SacI GAGCTC 1 cut(s) 1515
SalI GTCGAC 1 cut(s) 316
SaqAI TTAA 6 cut(s) 240, 1208, 1584, 1653, 1743, 1761
Sau3AI GATC 8 cut(s) 104, 151, 285, 295, 331, 1067, 1106, 2042
Sau96I GGNCC 7 cut(s) 521, 581, 635, 877, 1226, 1464, 1571
ScaI AGTACT 2 cut(s) 419, 1601
SchI GAGTC 4 cut(s) 301, 616, 1838, 2000
ScrFI CCNGG 8 cut(s) 91, 206, 460, 867, 875, 960, 1156, 1755
SduI GDGCHC 2 cut(s) 1515, 1944
SexAI ACCWGGT 1 cut(s) 958
SfaNI GCATC 3 cut(s) 916, 1384, 1455
SfcI CTRYAG 3 cut(s) 147, 654, 2031
Sfr274I CTCGAG 1 cut(s) 421
SinI GGWCC 2 cut(s) 877, 1226
SlaI CTCGAG 1 cut(s) 421
SmiMI CAYNNNNRTG 3 cut(s) 125, 501, 1095
SmlI CTYRAG 3 cut(s) 421, 1002, 1734
SmoI CTYRAG 3 cut(s) 421, 1002, 1734
SphI GCATGC 1 cut(s) 2012
SsiI CCGC 4 cut(s) 41, 602, 617, 1834
SspI AATATT 1 cut(s) 1776
SspMI CTAG 2 cut(s) 1269, 2131
SstI GAGCTC 1 cut(s) 1515
StyD4I CCNGG 8 cut(s) 89, 204, 458, 865, 873, 958, 1154, 1753
StyI CCWWGG 4 cut(s) 36, 126, 496, 917
TaaI ACNGT 8 cut(s) 136, 315, 516, 901, 984, 1063, 1670, 2126
TaiI ACGT 7 cut(s) 675, 777, 856, 907, 1165, 1299, 1947
TaqI TCGA 4 cut(s) 317, 422, 791, 1911
TatI WGTACW 3 cut(s) 417, 1359, 1599
TauI GCSGC 2 cut(s) 44, 619
TfiI GAWTC 5 cut(s) 188, 260, 433, 729, 1100
Tru1I TTAA 6 cut(s) 240, 1208, 1584, 1653, 1743, 1761
Tru9I TTAA 6 cut(s) 240, 1208, 1584, 1653, 1743, 1761
TscAI CASTG 4 cut(s) 318, 637, 987, 1543
TseFI GTSAC 3 cut(s) 304, 1714, 1930
TseI GCWGC 8 cut(s) 158, 536, 689, 949, 1020, 1499, 1606, 1873
Tsp45I GTSAC 3 cut(s) 304, 1714, 1930
TspDTI ATGAA 8 cut(s) 17, 316, 816, 1028, 1227, 1396, 1484, 1950
TspGWI ACGGA 2 cut(s) 226, 768
TspRI CASTG 4 cut(s) 318, 637, 987, 1543
Van91I CCANNNNNTGG 2 cut(s) 632, 887
VpaK11BI GGWCC 2 cut(s) 877, 1226
XapI RAATTY 4 cut(s) 210, 1400, 1591, 1957
XceI RCATGY 4 cut(s) 1027, 1649, 1803, 2012
XcmI CCANNNNNNNNNTGG 1 cut(s) 500
XhoI CTCGAG 1 cut(s) 421
XmiI GTMKAC 2 cut(s) 317, 509
XspI CTAG 2 cut(s) 1269, 2131
ZrmI AGTACT 2 cut(s) 419, 1601
Zsp2I ATGCAT 1 cut(s) 1805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.