Rw5G050270

YTH domain family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0001378
Physical Location & Seq
Forward (+)
86842167 .. 86846626
4460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G050270.1

Sequence Viewer

Length: 1725 bp
ATGCCCTATCACCCTAATGGTTATGCCTCTTCTGCCTATTACTATGGAGGATATGGTGGACTTGAGTGGGGCAACAATATGAATTCTGTTGTCTATGGTTATGGTTATGCACCCTATAACACATATTCAACAGCAGGGTCTCCAAATGTGGGAAGTGGTCAGCTATATGAACAGCAGTATCAATATCCTCCCTATTTTAAGCAGCTGACTCCTAAAAGTGGTACACCCTACATACCTAATTCAGCTGTTCCTTCCAAGGGGGGTGTTTCCACCACTAAGGATGCTGACCCAAAGTCCTCACCGGTAGGAACAGCTAATGGGATATCTAATGGTATTTTGTCCAGTGTGGGGCTGAAGGAAAATAATCTTTCAGACTTCTCCAAATATCAGAACTCATCTCTGAATGTAAAGGGTTCCTATGAGGGATACCCTGATGCAGTTTATGGTTTTGATGGTTTGATGTCTCCCATACCATGGTTAGAAGGGTCAACATTTTCAAATGGACAGGCTAAGGGGATGACCGGAAATACAGTCAACAGAACTCCGTCTTCTAAGAATCAGATTTCCCGACCAAATTCTCCATACATGGGTTTGCTGCCAAGGTTGGGGTACGGTTTGGATACAGCTCGTGGACTTAGTGGGATGTATGCCAACGATTTATATGGTCATAACTGGAACACATATGGACTTGGTATGGGGTTTGGATCCAATAGTTTTGGTATGGCAAGAAATGGATATGGTTGGACCTCTCTTCAAAACAAGTATAAGTCTAGGGGGCGTGGCAGCACCTTTCGCTATGGTAACCAGGACATAGATGGGTTGGAGGAGTTGAACAAAGGACCTAGAGGTAGGAGTTATAAGGCCGGGGTCAGTGTGGCGTTGAATAAAGCTAATGTTGAGAAGGATACAACTAGCACCATTCCAGAGAGGGAGCAGCACTCCGGAGCAGATATCCATGATTATTACTCAGATGCTAAGTTCTTCATTATAAAGTCATATAGTGAGGATGACGTTCATAAGAGTGTTAAGTATAATGTCTGGGCCAGCACACCAAATGGAAACAAGAAACTTAATGCAGCATACCAGGAGGCTCAGGAGAAAGCTAGTGGCTGCCCTGTATTTCTGCTGTTCTCTGTGAATGCTAGTGGTCAATTCGTTGGCCTAGCGGAGATGGTGGGGCTGGTTGATTTTGACAAGAATGTGGAGTATTGGCAACAAGACAAGTGGACTGGTTGTTTCCCTGTTAAGTGGCACATTGTAAAGGATGTACCCAACAGTTTGCTAAAGCACATTACCCTTGAAAACAATGAAAACAAACCTGTCACAAACAGTAGGGACACTCAAGAGGTCAAGTTAGAGGAGGGGCTTAAATTGATCAAACTATTCAAGGATCATTCTGGTAAAACATGCCTTTTGGATGATTTTGAGTTCTATGAAGATCGGCAAAAGACAATTGAGGAAGTTAAAGCAAAGCGGCAGACTCGGAAGAAGAAGGTATTGGAGGAGAAGCCAACTGATGGAAGAAATGATGGGACAGAAGAGGCACTACTCAAATCACCAGAGTCGTTGGGAACTGCATTGGATTTGGTTAAGGAACCAACACCAATTGATCAGAGTGATGAACAAATGAAGCCTTTGGAGAATGGCTCAGTTGCAGAAGCTGGAGATGACCTGAAGGGTCCACAACCAATTGTTGAAGAGTCCGAGGTGATTGTAACAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

574

Amino Acids

63.25

Weight (kDa)

6.02

Isoelectric Point (pI)

31.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 325 - 463 4.4e-49 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 858, 989
AccB7I CCANNNNNTGG 2 cut(s) 474, 1517
AccIII TCCGGA 1 cut(s) 941
AciI CCGC 2 cut(s) 1166, 1474
AclWI GGATC 3 cut(s) 699, 712, 1398
AcsI RAATTY 2 cut(s) 82, 574
AcuI CTGAAG 2 cut(s) 374, 1694
AfaI GTAC 3 cut(s) 223, 611, 1269
AfiI CCNNNNNNNGG 8 cut(s) 149, 218, 257, 348, 474, 587, 605, 1517
AgeI ACCGGT 1 cut(s) 301
AgsI TTSAA 8 cut(s) 129, 498, 755, 832, 883, 1301, 1387, 1697
AhdI GACNNNNNGTC 1 cut(s) 292
AjnI CCWGG 2 cut(s) 804, 1083
AjuI GAANNNNNNNTTGG 2 cut(s) 1481, 1513
AluBI AGCT 8 cut(s) 163, 205, 245, 314, 626, 890, 1103, 1661
AluI AGCT 8 cut(s) 163, 205, 245, 314, 626, 890, 1103, 1661
Alw26I GTCTC 2 cut(s) 144, 468
AlwI GGATC 3 cut(s) 699, 712, 1398
AlwNI CAGNNNCTG 1 cut(s) 1661
Aor13HI TCCGGA 1 cut(s) 941
AoxI GGCC 3 cut(s) 861, 1041, 1159
ApeKI GCWGC 6 cut(s) 202, 595, 783, 934, 1076, 1110
ApoI RAATTY 2 cut(s) 82, 574
AsiGI ACCGGT 1 cut(s) 301
AspS9I GGNCC 4 cut(s) 744, 839, 1041, 1679
AsuC2I CCSGG 1 cut(s) 865
AsuHPI GGTGA 3 cut(s) 291, 1548, 1720
AvaII GGWCC 3 cut(s) 744, 839, 1679
BaeI ACNNNNGTAYC 2 cut(s) 161, 194
BamHI GGATCC 1 cut(s) 704
BarI GAAGNNNNNNTAC 2 cut(s) 1530, 1562
BauI CACGAG 1 cut(s) 627
BbsI GAAGAC 1 cut(s) 540
BbvI GCAGC 6 cut(s) 214, 582, 795, 946, 1088, 1097
BccI CCATC 5 cut(s) 446, 809, 1165, 1511, 1523
BciT130I CCWGG 2 cut(s) 806, 1085
BciVI GTATCC 3 cut(s) 419, 613, 898
BclI TGATCA 2 cut(s) 1374, 1609
BcnI CCSGG 1 cut(s) 865
BcoDI GTCTC 2 cut(s) 144, 468
BfaI CTAG 6 cut(s) 771, 843, 912, 1104, 1143, 1163
BfuI GTATCC 3 cut(s) 419, 613, 898
BisI GCNGC 7 cut(s) 203, 596, 784, 935, 1077, 1111, 1475
BlsI GCNGC 7 cut(s) 204, 597, 785, 936, 1078, 1112, 1476
Bme1390I CCNGG 3 cut(s) 806, 865, 1085
Bme18I GGWCC 3 cut(s) 744, 839, 1679
BmeRI GACNNNNNGTC 1 cut(s) 292
BmgT120I GGNCC 4 cut(s) 744, 839, 1041, 1679
BmiI GGNNCC 4 cut(s) 415, 706, 1596, 1680
BmrFI CCNGG 3 cut(s) 806, 865, 1085
BmsI GCATC 3 cut(s) 271, 424, 961
BpiI GAAGAC 1 cut(s) 540
BplI GAGNNNNNCTC 4 cut(s) 923, 955, 1631, 1663
BpmI CTGGAG 1 cut(s) 1683
Bpu10I CCTNAGC 2 cut(s) 510, 1092
BpuEI CTTGAG 2 cut(s) 83, 1326
BpuMI CCSGG 1 cut(s) 865
BsaI GGTCTC 1 cut(s) 144
BsaJI CCNNGG 5 cut(s) 255, 473, 599, 864, 1704
BsaWI WCCGGW 3 cut(s) 301, 521, 941
Bsc4I CCNNNNNNNGG 8 cut(s) 149, 218, 257, 348, 474, 587, 605, 1517
Bse118I RCCGGY 1 cut(s) 301
Bse1I ACTGG 3 cut(s) 342, 677, 1234
BseAI TCCGGA 1 cut(s) 941
BseBI CCWGG 2 cut(s) 806, 1085
BseDI CCNNGG 5 cut(s) 255, 473, 599, 864, 1704
BseGI GGATG 6 cut(s) 286, 522, 648, 1012, 1270, 1423
BseLI CCNNNNNNNGG 8 cut(s) 149, 218, 257, 348, 474, 587, 605, 1517
BseMII CTCAG 3 cut(s) 981, 1106, 1662
BseNI ACTGG 3 cut(s) 342, 677, 1234
BseRI GAGGAG 3 cut(s) 839, 1373, 1517
BseXI GCAGC 6 cut(s) 214, 582, 795, 946, 1088, 1097
BshFI GGCC 3 cut(s) 863, 1043, 1161
BshTI ACCGGT 1 cut(s) 301
BsiSI CCGG 4 cut(s) 302, 522, 864, 942
BslFI GGGAC 2 cut(s) 1349, 1546
BslI CCNNNNNNNGG 8 cut(s) 149, 218, 257, 348, 474, 587, 605, 1517
BsmAI GTCTC 2 cut(s) 144, 468
BsmFI GGGAC 2 cut(s) 1349, 1546
BsmI GAATGC 1 cut(s) 1144
BsnI GGCC 3 cut(s) 863, 1043, 1161
Bso31I GGTCTC 1 cut(s) 144
Bsp13I TCCGGA 1 cut(s) 941
Bsp143I GATC 5 cut(s) 704, 1374, 1390, 1438, 1609
Bsp19I CCATGG 1 cut(s) 473
BspACI CCGC 2 cut(s) 1166, 1474
BspANI GGCC 3 cut(s) 863, 1043, 1161
BspCNI CTCAG 3 cut(s) 980, 1105, 1661
BspEI TCCGGA 1 cut(s) 941
BspLI GGNNCC 4 cut(s) 415, 706, 1596, 1680
BspPI GGATC 3 cut(s) 699, 712, 1398
BspTNI GGTCTC 1 cut(s) 144
BsrFI RCCGGY 1 cut(s) 301
BsrI ACTGG 3 cut(s) 342, 677, 1234
BssAI RCCGGY 1 cut(s) 301
BssECI CCNNGG 5 cut(s) 255, 473, 599, 864, 1704
BssMI GATC 5 cut(s) 704, 1374, 1390, 1438, 1609
BssSI CACGAG 1 cut(s) 627
BssT1I CCWWGG 3 cut(s) 255, 473, 599
Bst2BI CACGAG 1 cut(s) 627
Bst2UI CCWGG 2 cut(s) 806, 1085
Bst4CI ACNGT 4 cut(s) 532, 614, 1277, 1331
Bst6I CTCTTC 4 cut(s) 34, 756, 1533, 1692
BstC8I GCNNGC 1 cut(s) 1045
BstDEI CTNAG 8 cut(s) 276, 510, 552, 635, 967, 975, 1092, 1648
BstDSI CCRYGG 1 cut(s) 473
BstEII GGTNACC 1 cut(s) 800
BstF5I GGATG 6 cut(s) 286, 522, 648, 1012, 1270, 1423
BstKTI GATC 5 cut(s) 707, 1377, 1393, 1441, 1612
BstMAI GTCTC 2 cut(s) 144, 468
BstMBI GATC 5 cut(s) 704, 1374, 1390, 1438, 1609
BstMWI GCNNNNNNNGC 2 cut(s) 32, 792
BstNI CCWGG 2 cut(s) 806, 1085
BstNSI RCATGY 1 cut(s) 1410
BstPI GGTNACC 1 cut(s) 800
BstSCI CCNGG 3 cut(s) 804, 863, 1083
BstV1I GCAGC 6 cut(s) 214, 582, 795, 946, 1088, 1097
BstV2I GAAGAC 1 cut(s) 540
BstX2I RGATCY 1 cut(s) 704
BstYI RGATCY 1 cut(s) 704
BsuI GTATCC 3 cut(s) 419, 613, 898
BsuRI GGCC 3 cut(s) 863, 1043, 1161
BtgI CCRYGG 1 cut(s) 473
BtsCI GGATG 6 cut(s) 286, 522, 648, 1012, 1270, 1423
BtsIMutI CAGTG 2 cut(s) 349, 877
Cac8I GCNNGC 1 cut(s) 1045
CaiI CAGNNNCTG 1 cut(s) 1661
Cfr10I RCCGGY 1 cut(s) 301
Cfr13I GGNCC 4 cut(s) 744, 839, 1041, 1679
Csp6I GTAC 3 cut(s) 222, 610, 1268
CspAI ACCGGT 1 cut(s) 301
CspCI CAANNNNNGTGG 2 cut(s) 1205, 1240
CviAII CATG 4 cut(s) 474, 586, 956, 1407
CviQI GTAC 3 cut(s) 222, 610, 1268
DdeI CTNAG 8 cut(s) 276, 510, 552, 635, 967, 975, 1092, 1648
DpnI GATC 5 cut(s) 706, 1376, 1392, 1440, 1611
DpnII GATC 5 cut(s) 704, 1374, 1390, 1438, 1609
DriI GACNNNNNGTC 1 cut(s) 292
Eam1104I CTCTTC 4 cut(s) 34, 756, 1533, 1692
Eam1105I GACNNNNNGTC 1 cut(s) 292
EarI CTCTTC 4 cut(s) 34, 756, 1533, 1692
Eco130I CCWWGG 3 cut(s) 255, 473, 599
Eco31I GGTCTC 1 cut(s) 144
Eco32I GATATC 2 cut(s) 324, 952
Eco47I GGWCC 3 cut(s) 744, 839, 1679
Eco57I CTGAAG 2 cut(s) 374, 1694
Eco91I GGTNACC 1 cut(s) 800
EcoO109I RGGNCCY 1 cut(s) 839
EcoO65I GGTNACC 1 cut(s) 800
EcoRI GAATTC 1 cut(s) 82
EcoRII CCWGG 2 cut(s) 804, 1083
EcoRV GATATC 2 cut(s) 324, 952
EcoT14I CCWWGG 3 cut(s) 255, 473, 599
ErhI CCWWGG 3 cut(s) 255, 473, 599
FaeI CATG 4 cut(s) 477, 589, 959, 1410
FaqI GGGAC 2 cut(s) 1349, 1546
FatI CATG 4 cut(s) 473, 585, 955, 1406
FauNDI CATATG 1 cut(s) 682
FbaI TGATCA 2 cut(s) 1374, 1609
Fnu4HI GCNGC 7 cut(s) 203, 596, 784, 935, 1077, 1111, 1475
FokI GGATG 6 cut(s) 293, 529, 655, 1019, 1277, 1430
Fsp4HI GCNGC 7 cut(s) 203, 596, 784, 935, 1077, 1111, 1475
FspBI CTAG 6 cut(s) 771, 843, 912, 1104, 1143, 1163
GluI GCNGC 7 cut(s) 203, 596, 784, 935, 1077, 1111, 1475
GsuI CTGGAG 1 cut(s) 1683
HaeIII GGCC 3 cut(s) 863, 1043, 1161
HapII CCGG 4 cut(s) 302, 522, 864, 942
Hin1II CATG 4 cut(s) 477, 589, 959, 1410
HincII GTYRAC 2 cut(s) 489, 535
HindII GTYRAC 2 cut(s) 489, 535
HinfI GANTC 5 cut(s) 208, 556, 1480, 1562, 1700
HpaII CCGG 4 cut(s) 302, 522, 864, 942
HphI GGTGA 3 cut(s) 291, 1548, 1720
Hpy166II GTNNAC 7 cut(s) 59, 224, 489, 535, 632, 1227, 1682
Hpy188I TCNGA 8 cut(s) 373, 390, 402, 561, 970, 1485, 1614, 1705
Hpy188III TCNNGA 5 cut(s) 567, 923, 942, 1094, 1343
Hpy8I GTNNAC 7 cut(s) 59, 224, 489, 535, 632, 1227, 1682
HpyAV CCTTC 6 cut(s) 261, 349, 476, 895, 1486, 1669
HpyCH4III ACNGT 4 cut(s) 532, 614, 1277, 1331
HpyCH4IV ACGT 1 cut(s) 1011
HpyCH4V TGCA 5 cut(s) 110, 437, 1076, 1577, 1655
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 792
HpyF3I CTNAG 8 cut(s) 276, 510, 552, 635, 967, 975, 1092, 1648
HpySE526I ACGT 1 cut(s) 1011
Hsp92II CATG 4 cut(s) 477, 589, 959, 1410
Kpn2I TCCGGA 1 cut(s) 941
Ksp22I TGATCA 2 cut(s) 1374, 1609
Kzo9I GATC 5 cut(s) 704, 1374, 1390, 1438, 1609
LmnI GCTCC 2 cut(s) 931, 944
Lsp1109I GCAGC 6 cut(s) 214, 582, 795, 946, 1088, 1097
LweI GCATC 3 cut(s) 271, 424, 961
MaeI CTAG 6 cut(s) 771, 843, 912, 1104, 1143, 1163
MaeII ACGT 1 cut(s) 1011
MaeIII GTNAC 3 cut(s) 800, 1321, 1714
MalI GATC 5 cut(s) 706, 1376, 1392, 1440, 1611
MboI GATC 5 cut(s) 704, 1374, 1390, 1438, 1609
MfeI CAATTG 3 cut(s) 1452, 1605, 1689
MflI RGATCY 1 cut(s) 704
MluCI AATT 8 cut(s) 82, 238, 574, 1151, 1370, 1452, 1605, 1689
MlyI GAGTC 4 cut(s) 202, 1474, 1571, 1709
MmeI TCCRAC 2 cut(s) 722, 801
MroI TCCGGA 1 cut(s) 941
MseI TTAA 7 cut(s) 198, 1026, 1071, 1245, 1368, 1464, 1590
MslI CAYNNNNRTG 2 cut(s) 15, 1020
MspA1I CMGCKG 2 cut(s) 205, 245
MspI CCGG 4 cut(s) 302, 522, 864, 942
MspR9I CCNGG 3 cut(s) 806, 865, 1085
MunI CAATTG 3 cut(s) 1452, 1605, 1689
Mva1269I GAATGC 1 cut(s) 1144
MvaI CCWGG 2 cut(s) 806, 1085
MwoI GCNNNNNNNGC 2 cut(s) 32, 792
NciI CCSGG 1 cut(s) 865
NcoI CCATGG 1 cut(s) 473
NdeI CATATG 1 cut(s) 682
NdeII GATC 5 cut(s) 704, 1374, 1390, 1438, 1609
NlaIII CATG 4 cut(s) 477, 589, 959, 1410
NlaIV GGNNCC 4 cut(s) 415, 706, 1596, 1680
NmuCI GTSAC 1 cut(s) 1321
NspI RCATGY 1 cut(s) 1410
PctI GAATGC 1 cut(s) 1144
PfeI GAWTC 1 cut(s) 556
PflMI CCANNNNNTGG 2 cut(s) 474, 1517
PinAI ACCGGT 1 cut(s) 301
PkrI GCNGC 7 cut(s) 204, 597, 785, 936, 1078, 1112, 1476
PleI GAGTC 4 cut(s) 202, 1474, 1570, 1708
PpsI GAGTC 4 cut(s) 202, 1474, 1570, 1708
PpuMI RGGWCCY 1 cut(s) 839
PsiI TTATAA 2 cut(s) 858, 989
Psp5II RGGWCCY 1 cut(s) 839
Psp6I CCWGG 2 cut(s) 804, 1083
PspEI GGTNACC 1 cut(s) 800
PspGI CCWGG 2 cut(s) 804, 1083
PspN4I GGNNCC 4 cut(s) 415, 706, 1596, 1680
PspPI GGNCC 4 cut(s) 744, 839, 1041, 1679
PspPPI RGGWCCY 1 cut(s) 839
PstNI CAGNNNCTG 1 cut(s) 1661
PsuI RGATCY 1 cut(s) 704
PvuII CAGCTG 2 cut(s) 205, 245
RsaI GTAC 3 cut(s) 223, 611, 1269
RsaNI GTAC 3 cut(s) 222, 610, 1268
RseI CAYNNNNRTG 2 cut(s) 15, 1020
SaqAI TTAA 7 cut(s) 198, 1026, 1071, 1245, 1368, 1464, 1590
SatI GCNGC 7 cut(s) 203, 596, 784, 935, 1077, 1111, 1475
Sau3AI GATC 5 cut(s) 704, 1374, 1390, 1438, 1609
Sau96I GGNCC 4 cut(s) 744, 839, 1041, 1679
SchI GAGTC 4 cut(s) 202, 1474, 1571, 1709
ScrFI CCNGG 3 cut(s) 806, 865, 1085
SfaNI GCATC 3 cut(s) 271, 424, 961
SinI GGWCC 3 cut(s) 744, 839, 1679
SmiMI CAYNNNNRTG 2 cut(s) 15, 1020
SmlI CTYRAG 2 cut(s) 62, 1341
SmoI CTYRAG 2 cut(s) 62, 1341
Sse9I AATT 8 cut(s) 82, 238, 574, 1151, 1370, 1452, 1605, 1689
SsiI CCGC 2 cut(s) 1166, 1474
SspMI CTAG 6 cut(s) 771, 843, 912, 1104, 1143, 1163
StyD4I CCNGG 3 cut(s) 804, 863, 1083
StyI CCWWGG 3 cut(s) 255, 473, 599
TaaI ACNGT 4 cut(s) 532, 614, 1277, 1331
TaiI ACGT 1 cut(s) 1014
TasI AATT 8 cut(s) 82, 238, 574, 1151, 1370, 1452, 1605, 1689
TauI GCSGC 1 cut(s) 1477
TfiI GAWTC 1 cut(s) 556
Tru1I TTAA 7 cut(s) 198, 1026, 1071, 1245, 1368, 1464, 1590
Tru9I TTAA 7 cut(s) 198, 1026, 1071, 1245, 1368, 1464, 1590
TscAI CASTG 2 cut(s) 349, 877
TseFI GTSAC 1 cut(s) 1321
TseI GCWGC 6 cut(s) 202, 595, 783, 934, 1076, 1110
Tsp45I GTSAC 1 cut(s) 1321
TspDTI ATGAA 8 cut(s) 95, 183, 973, 1004, 1323, 1449, 1635, 1643
TspGWI ACGGA 1 cut(s) 534
TspRI CASTG 2 cut(s) 349, 877
Van91I CCANNNNNTGG 2 cut(s) 474, 1517
VpaK11BI GGWCC 3 cut(s) 744, 839, 1679
XapI RAATTY 2 cut(s) 82, 574
XceI RCATGY 1 cut(s) 1410
XcmI CCANNNNNNNNNTGG 1 cut(s) 812
XspI CTAG 6 cut(s) 771, 843, 912, 1104, 1143, 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.