Rroxscaffold_1G00000680

YTH domain family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001378
Physical Location & Seq
Reverse (-)
1094834 .. 1100862
6029 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00000680.1

Sequence Viewer

Length: 2598 bp
ATGTTGGGGCCTGTTGATTTTAACAAGAATTTGGAGTACTGGCAGCAAGACAAATGGAATGGCTGTTTCTCTGTCAAGTGGCATATTGTTAAAGACGTTCCTAACAGTTTGCTGAAGCATATTACTCTTGAAAATAATGAGAACAAGCCTGTGACTAATAGTAGGGACACTCAAGAGGTTAAGTTAGAACCAGGACTTAAAATGATCAAAATATTCAAGGAGCATTCAAGCAAAACATGCATTTTGGATGACTTTGGATTTTATGAGTCCCGCCAGAAGACAATTCAGGAGAAGAAGGCTAAGCAACAGCTGCAGTTTCAGAAGCAGGTATGGGAAGGAAAAACCCTCGATGAGAAGAAAGAGGTGGTGACAAATGGGCAAGTCAAAACACAAAATTCATCGGATGTTCCCTCTGAGATAACTAAGGAGTCTATCTCAATAGTGCATGCCAGCGAGGAGCTGAAACCTGCAGAAAATGGATCAATTGCGACTGGAGAAGCCCCAAAGGGTGCTAAGCCGGTTGTGGCTGAGAAGAGGGTTGTAGCAAATGGGGTTGCAAACGCTAAGCTTGTGGAGGCCGGCCGCTCTTCCCCTCTCTCTCTGACTCTCTTCAATCTCCTGAGTCTCCTCAGCCTCAGCCTCAGCCATGGCTACCGTCGCTTCACTTCCGCCGCCTGCCGATCACTGTTGTATCTCCTTGACCGTCTCGATTTTTCCTTAGAAGCTGCAGACTTGCTGCAGAATTTGTCATTGGATTCTCAGGCCACGGAGACCAAAATTTCTGAGCCCGCCAAGAAGGTCAATGCTGTGACTACTAAGCTCCAGTCAACTGACCGGACTAGGACTACCACCCCATCACTGAAGGATTCAACCATGCCCTATCACCCTAATGGTTACGCTTCTTCTGCCTATTACTATGGAGGATATGGAGGACTTGAGTGGGGCAACAATATGAATTCTGTTGTCTATGGTTATGGTTATGCACCCTATAACACATATTCAACAGCAGGGTCTCCAACTGTGGGAAGTGGTCAGCTATATGAACAGCACTGTTCCTTCCAAGGGGGTGTTTCCACCACTAAGGATGCTGACCAAAAGTCCTCACCGGTAGGAACAGCTAATGGGATATCTAATGGTATTTTGTCCAGTGTGGGGCTGAAGGAAAATAATCTTTCAGACTTCTCCAAATATCAAAACTCATCTCTAAATGTAAAGGGTTCCTATGAGGGATACCCTGATGCAGTTTATGGTTTTGATGGTTTGATGTCTCCCATACCATGGTTAGAAGGGTCAACGTTTTCAAATGGACAGGCTAAGGGGATGACCGGAAATACAGTCAACAGAACTCCGTCTTCTAAGAATCAGATTTCCCGACCAAATTCTCCATACATGGATGATCAGAATCCAATTGATTGTTCTTTAAGGTGGCCTCTCAAGAATTTCTATTCTATGACCTTGCAGGGTTTGCTGCCAAGGTTGGGGTACGGTTTGGATACAGCTCGTGGACTTAGTGGGATGTATGCCAACGATTTATATGGTCATAACTGGAACACATATGGACTTGGTATGGGGTTTGGATCCAATAGTTTTGGTATGGCAAGAAATGGATATGGTTGGACCTCTCTTCAAAACAAGTATAAGTCTAGGGGGCGTGGCAGCACCTTTCGCTATGGTAACCAGGACATAGATGGGTTGGAGGAGTTGAACAAAGGACCTAGAGGTAAGAGTTACAAAGCTGGGGTCAGTGTGGCGTTGAATAAAGCTAATGATGAGAAGGATACAACTAGCACCATTCCAGAGAGGGAGCAGCACTCCGGAGCAGATATCCATGATAATTACTCAGATGCTAAGTTCTTCATTATAAAGTCATATAGTGAGGATGACGTTCATAAGAGTGTTAAGTATAATGTCTGGGCCAGCACACCAAATGGAAACAAGAAACTTAATGCAGCATACCAGGAGGCTCAGGAGAAAGCTAGTGGCTGCCCTGTGAATGCTAGTGGTCAATTCGTTGGCCTAGCGGAGATGGTGGGGCTGGTTGATTTTGACAAGAATGTGGAGTATTGGCAACAAGACAAGTGGACTGGTTGTTTCCCTGTTAAGTGGCACATTGTAAAGGATGTACCCAACAGTTTGCTAAAGCACATTACCCTTGAAAACAATGAAAACAAACCTGTGACAAACAGTAGGGACACTCAAGAGGTCAAGTTAGAGGAGGGGCTTAAATTGATCAAACTATTCAAGGATCATTCCGGTAAAACATGCCTTTTGGATGATTTTGAGTTCTATGAAGATCGGCAAAAGACAATTGAGGAAGTTAAAGCAAAGCGGCAGACTCGGAAGAAGGCAAGATTTTTTCCTTCAAAGGTATTGGAGGAGAAGCCAACTGATGGAAGAAATGATGGGACAGAAGAGGCACTACTCAAATCACCAGAGTCATTGGGAACTGCATTGGATTTGGTTAAGGAACCAACACCAATTGATCAGAGTGATGAACAAGTGAAGCCTTTGGAGAATGGCTCAGTTGCAGAAGCTGGAGATGACCTGAAGGGTCCACAACCAGTTGTTGAAGAGTCTGAGGTGATTGTAACAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

865

Amino Acids

95.81

Weight (kDa)

6.45

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 1 - 73 6.7e-19 YT521-B-like domain
YTH PF04146 616 - 748 3.3e-42 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1862
Acc36I ACCTGC 2 cut(s) 316, 475
AccB7I CCANNNNNTGG 2 cut(s) 1278, 2390
AccBSI CCGCTC 1 cut(s) 585
AccIII TCCGGA 1 cut(s) 1814
AciI CCGC 7 cut(s) 271, 583, 669, 672, 789, 2021, 2329
AclI AACGTT 1 cut(s) 1295
AclWI GGATC 4 cut(s) 487, 1572, 1585, 2253
AcoI YGGCCR 1 cut(s) 580
AcsI RAATTY 7 cut(s) 28, 394, 742, 777, 955, 1378, 1438
AcuI CTGAAG 4 cut(s) 134, 881, 1178, 2567
AfaI GTAC 3 cut(s) 38, 1484, 2124
AfiI CCNNNNNNNGG 6 cut(s) 1022, 1062, 1152, 1278, 1478, 2390
AgeI ACCGGT 1 cut(s) 1105
AhdI GACNNNNNGTC 1 cut(s) 1096
AjnI CCWGG 3 cut(s) 190, 1677, 1956
AjuI GAANNNNNNNTTGG 4 cut(s) 734, 766, 1399, 1431
Alw26I GTCTC 5 cut(s) 629, 710, 764, 1017, 1272
AlwI GGATC 4 cut(s) 487, 1572, 1585, 2253
AlwNI CAGNNNCTG 1 cut(s) 2534
Aor13HI TCCGGA 1 cut(s) 1814
AoxI GGCC 7 cut(s) 8, 576, 580, 762, 1427, 1914, 2014
ApeKI GCWGC 9 cut(s) 43, 310, 725, 736, 1468, 1656, 1807, 1949, 1983
ApoI RAATTY 7 cut(s) 28, 394, 742, 777, 955, 1378, 1438
ArsI GACNNNNNNTTYG 2 cut(s) 1725, 1757
AsiGI ACCGGT 1 cut(s) 1105
AspS9I GGNCC 5 cut(s) 8, 1617, 1712, 1914, 2552
AsuHPI GGTGA 5 cut(s) 379, 875, 1095, 2421, 2593
AvaII GGWCC 3 cut(s) 1617, 1712, 2552
BaeI ACNNNNGTAYC 2 cut(s) 674, 707
BamHI GGATCC 1 cut(s) 1577
BanII GRGCYC 1 cut(s) 789
BarI GAAGNNNNNNTAC 2 cut(s) 2403, 2435
BauI CACGAG 1 cut(s) 1500
BbsI GAAGAC 2 cut(s) 284, 1344
BbvCI CCTCAGC 3 cut(s) 629, 635, 641
BbvI GCAGC 9 cut(s) 55, 297, 712, 723, 1455, 1668, 1819, 1961, 1970
BccI CCATC 6 cut(s) 862, 1250, 1682, 2020, 2384, 2396
BciT130I CCWGG 3 cut(s) 192, 1679, 1958
BciVI GTATCC 3 cut(s) 1223, 1486, 1771
BclI TGATCA 4 cut(s) 204, 1396, 2229, 2482
BcoDI GTCTC 5 cut(s) 629, 710, 764, 1017, 1272
BfaI CTAG 7 cut(s) 840, 1644, 1716, 1785, 1977, 1998, 2018
BfmI CTRYAG 4 cut(s) 311, 468, 726, 737
BfuAI ACCTGC 2 cut(s) 316, 475
BfuI GTATCC 3 cut(s) 1223, 1486, 1771
BlpI GCTNAGC 3 cut(s) 300, 513, 564
BmcAI AGTACT 1 cut(s) 38
Bme1390I CCNGG 3 cut(s) 192, 1679, 1958
Bme18I GGWCC 3 cut(s) 1617, 1712, 2552
BmeRI GACNNNNNGTC 1 cut(s) 1096
BmgT120I GGNCC 5 cut(s) 8, 1617, 1712, 1914, 2552
BmiI GGNNCC 5 cut(s) 9, 1219, 1579, 2469, 2553
BmrFI CCNGG 3 cut(s) 192, 1679, 1958
BmsI GCATC 3 cut(s) 1075, 1228, 1834
BpiI GAAGAC 2 cut(s) 284, 1344
BplI GAGNNNNNCTC 6 cut(s) 419, 451, 1796, 1828, 2504, 2536
BpmI CTGGAG 3 cut(s) 513, 806, 2556
Bpu10I CCTNAGC 5 cut(s) 629, 635, 641, 1314, 1965
Bpu1102I GCTNAGC 3 cut(s) 300, 513, 564
BpuEI CTTGAG 4 cut(s) 156, 956, 1418, 2181
BsaBI GATNNNNATC 1 cut(s) 1401
BsaI GGTCTC 2 cut(s) 764, 1017
BsaJI CCNNGG 5 cut(s) 646, 765, 1060, 1277, 1472
BsaWI WCCGGW 5 cut(s) 834, 1105, 1325, 1814, 2252
Bsc4I CCNNNNNNNGG 6 cut(s) 1022, 1062, 1152, 1278, 1478, 2390
Bse118I RCCGGY 3 cut(s) 517, 578, 1105
Bse1I ACTGG 7 cut(s) 44, 496, 823, 1146, 1550, 2089, 2561
Bse8I GATNNNNATC 1 cut(s) 1401
BseAI TCCGGA 1 cut(s) 1814
BseBI CCWGG 3 cut(s) 192, 1679, 1958
BseDI CCNNGG 5 cut(s) 646, 765, 1060, 1277, 1472
BseGI GGATG 9 cut(s) 253, 409, 1090, 1326, 1399, 1521, 1885, 2125, 2278
BseJI GATNNNNATC 1 cut(s) 1401
BseLI CCNNNNNNNGG 6 cut(s) 1022, 1062, 1152, 1278, 1478, 2390
BseNI ACTGG 7 cut(s) 44, 496, 823, 1146, 1550, 2089, 2561
BseRI GAGGAG 5 cut(s) 470, 617, 1712, 2228, 2390
BseX3I CGGCCG 1 cut(s) 580
BseXI GCAGC 9 cut(s) 55, 297, 712, 723, 1455, 1668, 1819, 1961, 1970
BseYI CCCAGC 1 cut(s) 1736
Bsh1285I CGRYCG 1 cut(s) 583
BshFI GGCC 7 cut(s) 10, 578, 582, 764, 1429, 1916, 2016
BshTI ACCGGT 1 cut(s) 1105
BsiEI CGRYCG 1 cut(s) 583
BsiSI CCGG 7 cut(s) 518, 579, 835, 1106, 1326, 1815, 2253
BslFI GGGAC 4 cut(s) 179, 253, 2204, 2419
BslI CCNNNNNNNGG 6 cut(s) 1022, 1062, 1152, 1278, 1478, 2390
BsmAI GTCTC 5 cut(s) 629, 710, 764, 1017, 1272
BsmBI CGTCTC 1 cut(s) 710
BsmFI GGGAC 4 cut(s) 179, 253, 2204, 2419
BsmI GAATGC 2 cut(s) 223, 1999
BsnI GGCC 7 cut(s) 10, 578, 582, 764, 1429, 1916, 2016
Bso31I GGTCTC 2 cut(s) 764, 1017
Bsp1286I GDGCHC 1 cut(s) 789
Bsp13I TCCGGA 1 cut(s) 1814
Bsp143I GATC 9 cut(s) 204, 479, 680, 1396, 1577, 2229, 2245, 2293, 2482
Bsp1720I GCTNAGC 3 cut(s) 300, 513, 564
Bsp19I CCATGG 2 cut(s) 646, 1277
BspACI CCGC 7 cut(s) 271, 583, 669, 672, 789, 2021, 2329
BspANI GGCC 7 cut(s) 10, 578, 582, 764, 1429, 1916, 2016
BspEI TCCGGA 1 cut(s) 1814
BspLI GGNNCC 5 cut(s) 9, 1219, 1579, 2469, 2553
BspMAI CTGCAG 4 cut(s) 315, 472, 730, 741
BspMI ACCTGC 2 cut(s) 316, 475
BspPI GGATC 4 cut(s) 487, 1572, 1585, 2253
BspQI GCTCTTC 1 cut(s) 592
BspTNI GGTCTC 2 cut(s) 764, 1017
BsrBI CCGCTC 1 cut(s) 585
BsrFI RCCGGY 3 cut(s) 517, 578, 1105
BsrI ACTGG 7 cut(s) 44, 496, 823, 1146, 1550, 2089, 2561
BssAI RCCGGY 3 cut(s) 517, 578, 1105
BssECI CCNNGG 5 cut(s) 646, 765, 1060, 1277, 1472
BssMI GATC 9 cut(s) 204, 479, 680, 1396, 1577, 2229, 2245, 2293, 2482
BssSI CACGAG 1 cut(s) 1500
BssT1I CCWWGG 4 cut(s) 646, 1060, 1277, 1472
Bst2BI CACGAG 1 cut(s) 1500
Bst2UI CCWGG 3 cut(s) 192, 1679, 1958
Bst6I CTCTTC 6 cut(s) 527, 592, 614, 1629, 2406, 2565
BstAPI GCANNNNNTGC 3 cut(s) 237, 310, 1465
BstC8I GCNNGC 6 cut(s) 447, 451, 580, 676, 789, 1918
BstDSI CCRYGG 3 cut(s) 646, 765, 1277
BstEII GGTNACC 1 cut(s) 1673
BstF5I GGATG 9 cut(s) 253, 409, 1090, 1326, 1399, 1521, 1885, 2125, 2278
BstKTI GATC 9 cut(s) 207, 482, 683, 1399, 1580, 2232, 2248, 2296, 2485
BstMAI GTCTC 5 cut(s) 629, 710, 764, 1017, 1272
BstMBI GATC 9 cut(s) 204, 479, 680, 1396, 1577, 2229, 2245, 2293, 2482
BstMCI CGRYCG 1 cut(s) 583
BstMWI GCNNNNNNNGC 6 cut(s) 237, 310, 657, 905, 1465, 1665
BstNI CCWGG 3 cut(s) 192, 1679, 1958
BstNSI RCATGY 3 cut(s) 240, 449, 2265
BstPI GGTNACC 1 cut(s) 1673
BstSCI CCNGG 3 cut(s) 190, 1677, 1956
BstSFI CTRYAG 4 cut(s) 311, 468, 726, 737
BstV1I GCAGC 9 cut(s) 55, 297, 712, 723, 1455, 1668, 1819, 1961, 1970
BstV2I GAAGAC 2 cut(s) 284, 1344
BstX2I RGATCY 1 cut(s) 1577
BstYI RGATCY 1 cut(s) 1577
BstZI CGGCCG 1 cut(s) 580
BsuI GTATCC 3 cut(s) 1223, 1486, 1771
BsuRI GGCC 7 cut(s) 10, 578, 582, 764, 1429, 1916, 2016
BtgI CCRYGG 3 cut(s) 646, 765, 1277
BtsCI GGATG 9 cut(s) 253, 409, 1090, 1326, 1399, 1521, 1885, 2125, 2278
BtsIMutI CAGTG 5 cut(s) 683, 857, 1048, 1153, 1750
BveI ACCTGC 2 cut(s) 316, 475
Cac8I GCNNGC 6 cut(s) 447, 451, 580, 676, 789, 1918
CaiI CAGNNNCTG 1 cut(s) 2534
Cfr10I RCCGGY 3 cut(s) 517, 578, 1105
Cfr13I GGNCC 5 cut(s) 8, 1617, 1712, 1914, 2552
Csp6I GTAC 3 cut(s) 37, 1483, 2123
CspAI ACCGGT 1 cut(s) 1105
CspCI CAANNNNNGTGG 2 cut(s) 2060, 2095
CviAII CATG 8 cut(s) 237, 446, 647, 874, 1278, 1390, 1829, 2262
CviQI GTAC 3 cut(s) 37, 1483, 2123
DpnI GATC 9 cut(s) 206, 481, 682, 1398, 1579, 2231, 2247, 2295, 2484
DpnII GATC 9 cut(s) 204, 479, 680, 1396, 1577, 2229, 2245, 2293, 2482
DriI GACNNNNNGTC 1 cut(s) 1096
EaeI YGGCCR 1 cut(s) 580
EagI CGGCCG 1 cut(s) 580
Eam1104I CTCTTC 6 cut(s) 527, 592, 614, 1629, 2406, 2565
Eam1105I GACNNNNNGTC 1 cut(s) 1096
EarI CTCTTC 6 cut(s) 527, 592, 614, 1629, 2406, 2565
EciI GGCGGA 1 cut(s) 658
EclXI CGGCCG 1 cut(s) 580
Eco130I CCWWGG 4 cut(s) 646, 1060, 1277, 1472
Eco24I GRGCYC 1 cut(s) 789
Eco31I GGTCTC 2 cut(s) 764, 1017
Eco32I GATATC 2 cut(s) 1128, 1825
Eco47I GGWCC 3 cut(s) 1617, 1712, 2552
Eco52I CGGCCG 1 cut(s) 580
Eco57I CTGAAG 4 cut(s) 134, 881, 1178, 2567
Eco91I GGTNACC 1 cut(s) 1673
EcoO109I RGGNCCY 2 cut(s) 8, 1712
EcoO65I GGTNACC 1 cut(s) 1673
EcoRI GAATTC 1 cut(s) 955
EcoRII CCWGG 3 cut(s) 190, 1677, 1956
EcoRV GATATC 2 cut(s) 1128, 1825
EcoT14I CCWWGG 4 cut(s) 646, 1060, 1277, 1472
EcoT22I ATGCAT 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 789
ErhI CCWWGG 4 cut(s) 646, 1060, 1277, 1472
Esp3I CGTCTC 1 cut(s) 710
FaeI CATG 8 cut(s) 240, 449, 650, 877, 1281, 1393, 1832, 2265
FaqI GGGAC 4 cut(s) 179, 253, 2204, 2419
FatI CATG 8 cut(s) 236, 445, 646, 873, 1277, 1389, 1828, 2261
FauI CCCGC 2 cut(s) 278, 796
FauNDI CATATG 1 cut(s) 1555
FbaI TGATCA 4 cut(s) 204, 1396, 2229, 2482
FokI GGATG 9 cut(s) 260, 416, 1097, 1333, 1406, 1528, 1892, 2132, 2285
FriOI GRGCYC 1 cut(s) 789
FseI GGCCGGCC 1 cut(s) 582
FspBI CTAG 7 cut(s) 840, 1644, 1716, 1785, 1977, 1998, 2018
GsaI CCCAGC 1 cut(s) 1740
GsuI CTGGAG 3 cut(s) 513, 806, 2556
HaeIII GGCC 7 cut(s) 10, 578, 582, 764, 1429, 1916, 2016
HapII CCGG 7 cut(s) 518, 579, 835, 1106, 1326, 1815, 2253
Hin1II CATG 8 cut(s) 240, 449, 650, 877, 1281, 1393, 1832, 2265
HincII GTYRAC 3 cut(s) 828, 1293, 1339
HindII GTYRAC 3 cut(s) 828, 1293, 1339
HindIII AAGCTT 1 cut(s) 566
HpaII CCGG 7 cut(s) 518, 579, 835, 1106, 1326, 1815, 2253
HphI GGTGA 5 cut(s) 379, 875, 1095, 2421, 2593
Hpy166II GTNNAC 6 cut(s) 828, 1293, 1339, 1505, 2082, 2555
Hpy8I GTNNAC 6 cut(s) 828, 1293, 1339, 1505, 2082, 2555
Hpy99I CGWCG 1 cut(s) 660
HpyCH4IV ACGT 3 cut(s) 96, 1295, 1884
HpyF10VI GCNNNNNNNGC 6 cut(s) 237, 310, 657, 905, 1465, 1665
HpySE526I ACGT 3 cut(s) 96, 1295, 1884
Hsp92II CATG 8 cut(s) 240, 449, 650, 877, 1281, 1393, 1832, 2265
Kpn2I TCCGGA 1 cut(s) 1814
KroI GCCGGC 1 cut(s) 578
KroNI GCCGGC 1 cut(s) 580
Ksp22I TGATCA 4 cut(s) 204, 1396, 2229, 2482
Kzo9I GATC 9 cut(s) 204, 479, 680, 1396, 1577, 2229, 2245, 2293, 2482
LguI GCTCTTC 1 cut(s) 592
LmnI GCTCC 5 cut(s) 220, 457, 825, 1804, 1817
Lsp1109I GCAGC 9 cut(s) 55, 297, 712, 723, 1455, 1668, 1819, 1961, 1970
LweI GCATC 3 cut(s) 1075, 1228, 1834
MaeI CTAG 7 cut(s) 840, 1644, 1716, 1785, 1977, 1998, 2018
MaeII ACGT 3 cut(s) 96, 1295, 1884
MaeIII GTNAC 8 cut(s) 151, 367, 808, 893, 1673, 1727, 2176, 2587
MalI GATC 9 cut(s) 206, 481, 682, 1398, 1579, 2231, 2247, 2295, 2484
MbiI CCGCTC 1 cut(s) 585
MboI GATC 9 cut(s) 204, 479, 680, 1396, 1577, 2229, 2245, 2293, 2482
MfeI CAATTG 4 cut(s) 483, 1407, 2307, 2478
MflI RGATCY 1 cut(s) 1577
MhlI GDGCHC 1 cut(s) 789
MlyI GAGTC 7 cut(s) 275, 437, 598, 631, 2329, 2444, 2582
MmeI TCCRAC 3 cut(s) 1040, 1595, 1674
Mph1103I ATGCAT 1 cut(s) 242
MroI TCCGGA 1 cut(s) 1814
MroNI GCCGGC 1 cut(s) 578
MslI CAYNNNNRTG 2 cut(s) 888, 1893
MspA1I CMGCKG 1 cut(s) 310
MspI CCGG 7 cut(s) 518, 579, 835, 1106, 1326, 1815, 2253
MspR9I CCNGG 3 cut(s) 192, 1679, 1958
MunI CAATTG 4 cut(s) 483, 1407, 2307, 2478
Mva1269I GAATGC 2 cut(s) 223, 1999
MvaI CCWGG 3 cut(s) 192, 1679, 1958
MwoI GCNNNNNNNGC 6 cut(s) 237, 310, 657, 905, 1465, 1665
NaeI GCCGGC 1 cut(s) 580
NcoI CCATGG 2 cut(s) 646, 1277
NdeI CATATG 1 cut(s) 1555
NdeII GATC 9 cut(s) 204, 479, 680, 1396, 1577, 2229, 2245, 2293, 2482
NgoMIV GCCGGC 1 cut(s) 578
NlaIII CATG 8 cut(s) 240, 449, 650, 877, 1281, 1393, 1832, 2265
NlaIV GGNNCC 5 cut(s) 9, 1219, 1579, 2469, 2553
NmuCI GTSAC 4 cut(s) 151, 367, 808, 2176
NsiI ATGCAT 1 cut(s) 242
NspI RCATGY 3 cut(s) 240, 449, 2265
PaeI GCATGC 1 cut(s) 449
PciSI GCTCTTC 1 cut(s) 592
PctI GAATGC 2 cut(s) 223, 1999
PdiI GCCGGC 1 cut(s) 580
PfeI GAWTC 4 cut(s) 755, 866, 1360, 1402
PflMI CCANNNNNTGG 2 cut(s) 1278, 2390
PinAI ACCGGT 1 cut(s) 1105
PleI GAGTC 7 cut(s) 274, 436, 598, 630, 2329, 2443, 2581
PpsI GAGTC 7 cut(s) 274, 436, 598, 630, 2329, 2443, 2581
PpuMI RGGWCCY 1 cut(s) 1712
PsiI TTATAA 1 cut(s) 1862
Psp1406I AACGTT 1 cut(s) 1295
Psp5II RGGWCCY 1 cut(s) 1712
Psp6I CCWGG 3 cut(s) 190, 1677, 1956
PspEI GGTNACC 1 cut(s) 1673
PspFI CCCAGC 1 cut(s) 1736
PspGI CCWGG 3 cut(s) 190, 1677, 1956
PspN4I GGNNCC 5 cut(s) 9, 1219, 1579, 2469, 2553
PspPI GGNCC 5 cut(s) 8, 1617, 1712, 1914, 2552
PspPPI RGGWCCY 1 cut(s) 1712
PstI CTGCAG 4 cut(s) 315, 472, 730, 741
PstNI CAGNNNCTG 1 cut(s) 2534
PsuI RGATCY 1 cut(s) 1577
PvuII CAGCTG 1 cut(s) 310
RigI GGCCGGCC 1 cut(s) 582
RsaI GTAC 3 cut(s) 38, 1484, 2124
RsaNI GTAC 3 cut(s) 37, 1483, 2123
RseI CAYNNNNRTG 2 cut(s) 888, 1893
SapI GCTCTTC 1 cut(s) 592
Sau3AI GATC 9 cut(s) 204, 479, 680, 1396, 1577, 2229, 2245, 2293, 2482
Sau96I GGNCC 5 cut(s) 8, 1617, 1712, 1914, 2552
ScaI AGTACT 1 cut(s) 38
SchI GAGTC 7 cut(s) 275, 437, 598, 631, 2329, 2444, 2582
ScrFI CCNGG 3 cut(s) 192, 1679, 1958
SduI GDGCHC 1 cut(s) 789
SfaNI GCATC 3 cut(s) 1075, 1228, 1834
SfcI CTRYAG 4 cut(s) 311, 468, 726, 737
SinI GGWCC 3 cut(s) 1617, 1712, 2552
SmiMI CAYNNNNRTG 2 cut(s) 888, 1893
SmlI CTYRAG 4 cut(s) 171, 935, 1433, 2196
SmoI CTYRAG 4 cut(s) 171, 935, 1433, 2196
SphI GCATGC 1 cut(s) 449
SsiI CCGC 7 cut(s) 271, 583, 669, 672, 789, 2021, 2329
SspI AATATT 1 cut(s) 213
SspMI CTAG 7 cut(s) 840, 1644, 1716, 1785, 1977, 1998, 2018
StyD4I CCNGG 3 cut(s) 190, 1677, 1956
StyI CCWWGG 4 cut(s) 646, 1060, 1277, 1472
TaiI ACGT 3 cut(s) 99, 1298, 1887
TaqI TCGA 2 cut(s) 348, 708
TatI WGTACW 1 cut(s) 36
TauI GCSGC 3 cut(s) 585, 674, 2332
TfiI GAWTC 4 cut(s) 755, 866, 1360, 1402
TscAI CASTG 5 cut(s) 690, 864, 1055, 1153, 1750
TseFI GTSAC 4 cut(s) 151, 367, 808, 2176
TseI GCWGC 9 cut(s) 43, 310, 725, 736, 1468, 1656, 1807, 1949, 1983
Tsp45I GTSAC 4 cut(s) 151, 367, 808, 2176
TspDTI ATGAA 8 cut(s) 387, 968, 1056, 1846, 1877, 2178, 2304, 2508
TspGWI ACGGA 2 cut(s) 782, 1338
TspRI CASTG 5 cut(s) 690, 864, 1055, 1153, 1750
Van91I CCANNNNNTGG 2 cut(s) 1278, 2390
VpaK11BI GGWCC 3 cut(s) 1617, 1712, 2552
XapI RAATTY 7 cut(s) 28, 394, 742, 777, 955, 1378, 1438
XceI RCATGY 3 cut(s) 240, 449, 2265
XcmI CCANNNNNNNNNTGG 1 cut(s) 1685
XspI CTAG 7 cut(s) 840, 1644, 1716, 1785, 1977, 1998, 2018
ZrmI AGTACT 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.