Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003556

Physical Location & Seq

Genomic Coordinates Reverse (-)

21111727 .. 21113621

Gene Structure 1895 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G56400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGACTTTCAAGAGAATAGCTTCAAGTATCCAACAAGACAGATTATCCAATCTACCAGATGTGCTTCTGATTATGATAATCTCTTGCTTGTCGTTTAAGGAATGTATAAGGACCAGTGTACTCGCTAAGAGGTGGAGGTATCTATGTCGGGAAACAAGAAACATTTCTTTTAAGGAAACCGAGTACGTGGACCACTTTGTCTCCGACAAAAGATCCAAAAGGGTTTCGTTTGCTGCTTATATGTGTCAATGGGTCTCTAGATATCACGGTCGTTACATTGAAACCCTCGAGATTTATTTCTCCATTCCATCGGATTTTCTGGCAGCGGTCGAGTCACTGATCGAATTCGCGGTCTCAAGACAAGTCAAGAACCTAGTTCTTGATTTCTCGGACCCTTCTTGGATAAGCACTAGCTGTGCGTCGAGGTATGACTATGTTTGTGTGCAATTGCCTGTATGCGTTTATAGTCTAACAACCCTTGAATCACTGAAGATTTACTCGTGCGGGTTTGACCCCTCGAAATTCTCAAACTCGAGATTGCCTAGAAAGCTCTCTATTGGTTGGATCAAACTCACAGACGTTGAGTCTTTGTTATTAAACTCTCCAACACTCAAGAGTCTAAGTATTAATTACTGTTGGGGTATTGAAATCCGAAACATAGCCGGAGATATGAAAGAATTTGTATTTGAGAGCTGCGACTTCTCCTCTTTCATGGTTTGTTGCTTTGACCTCCCTAATGTAGAGATCTTTAAATACTCTGGCCAAATTCTGTCCTTTGATGTCAAGAGAATGAATATGAGCATCAAAGACGTTATCTTGGATTTCACGGCAGAGGGCTTGTATGAAGATCGGAATCAAAGAACCAAATTAGAAGGATCAGTTCTCTCTGCCTTCCTTAACAATCTTAGAGGTGCGAGGACCTTAAGTGTCTGCCCTTATCTCCTTCAGACTATCCAAGAATGTGAAGATCCATTCGATTTGCTTCGTCCGATGGAAACACAACACTTGGTGCTGAGAACGAGGTTGCATGTCATGGAATTTAAGGGAATTAAGCTCCTCCTCGATAATTGCCCTAACCTAGAAACGTTAACTTTCGATATCTTCAGTCGAAGTCTTTTCTCGTACAATAAGTCATATTATGGCGTCGGTCCACGATCATATTGGAAAAAAAACCTTACTTATAAGTCTCTTCCTAAGACACTTAAGGTCGTGGTCGTGAGGAACTTCACTGGTCGCTTTGGCGAGCTAAATGTTTTGAAGTTTTTGATTCAGTCGGGACGTGGGCGTTGGCCTGGACGGGAGCATGGGCCTATGCTGGAAAGAGTGGAGCTTTACATGGATAGTAGTATGGCAGAAAGTCAAAAAGAGTTGGCAGATGATGGAGCCATGATGTTACAGAGTATTTCAGGGGATGTACAGGTTCTTGTATATGATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

479

Amino Acids

55.35

Weight (kDa)

8.38

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	15 - 47	2.5e-06	F-box domain
LRR_At1g61320_AtMIF1	PF23622	66 - 225	2.9e-06	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56400 AT1G56400 AT2G17305 AT3G29830 AT3G29830 AT3G62230 AT5G54820
fragaria_vesca	FvH4_7g19741
malus_domestica	MD03G1208600.v1.1 MD11G1222600.v1.1 MD11G1222800.v1.1 MD11G1223200.v1.1
prunus_persica	Prupe.4G208100_v2.0.a1 Prupe.4G208200_v2.0.a1 Prupe.4G208300_v2.0.a1
pyrus_communis	pycom03g15720 pycom03g15760 pycom11g19660
rosa_chinensis	RchiOBHm_Chr1g0363631 RchiOBHm_Chr7g0214121
rosa_laevigata	RLG00000008357 RLG00000027555
rosa_multiflora	Rmu_sc0000548.1_g000010 Rmu_sc0000675.1_g000034
rosa_roxburghii	Rroxscaffold_4G00293030
rosa_rugosa	Rorug01G0308300
rosa_samantha	Rh1AG089100 Rh1AG317200 Rh1BG280600 Rh1CG296700 Rh1DG311800 Rh4AG168100 Rh4BG165000
rosa_wichuraiana	Rw1G006910 Rw1G028130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1182
AasI	GACNNNNNNGTC	1 cut(s)	197
AccII	CGCG	1 cut(s)	350
AciI	CCGC	3 cut(s)	326, 350, 504
AclI	AACGTT	1 cut(s)	1085
AclWI	GGATC	5 cut(s)	207, 572, 883, 962, 1427
AcoI	YGGCCR	1 cut(s)	760
AcsI	RAATTY	5 cut(s)	344, 521, 677, 765, 1037
AcuI	CTGAAG	3 cut(s)	509, 929, 1087
AcyI	GRCGYC	1 cut(s)	1143
AdeI	CACNNNGTG	1 cut(s)	1009
AfaI	GTAC	4 cut(s)	120, 185, 1124, 1416
AflII	CTTAAG	2 cut(s)	922, 1202
AgsI	TTSAA	6 cut(s)	10, 24, 281, 482, 647, 1258
AhdI	GACNNNNNGTC	1 cut(s)	583
AjiI	CACGTC	1 cut(s)	1280
AjnI	CCWGG	1 cut(s)	1291
AluBI	AGCT	7 cut(s)	20, 414, 550, 693, 1054, 1246, 1330
AluI	AGCT	7 cut(s)	20, 414, 550, 693, 1054, 1246, 1330
Alw26I	GTCTC	4 cut(s)	205, 259, 358, 1191
AlwI	GGATC	5 cut(s)	207, 572, 883, 962, 1427
Ama87I	CYCGRG	2 cut(s)	287, 532
AoxI	GGCC	3 cut(s)	760, 1289, 1307
ApeKI	GCWGC	3 cut(s)	233, 323, 693
ApoI	RAATTY	5 cut(s)	344, 521, 677, 765, 1037
ArsI	GACNNNNNNTTYG	2 cut(s)	336, 368
AseI	ATTAAT	1 cut(s)	627
Asp700I	GAANNNNTTC	2 cut(s)	19, 163
AspS9I	GGNCC	6 cut(s)	111, 190, 391, 918, 1148, 1307
AvaI	CYCGRG	2 cut(s)	287, 532
AvaII	GGWCC	5 cut(s)	111, 190, 391, 918, 1148
BalI	TGGCCA	1 cut(s)	762
BauI	CACGAG	1 cut(s)	499
BbvI	GCAGC	3 cut(s)	220, 335, 680
BccI	CCATC	3 cut(s)	316, 985, 1373
BceAI	ACGGC	1 cut(s)	843
BciT130I	CCWGG	1 cut(s)	1293
BciVI	GTATCC	1 cut(s)	38
BcoDI	GTCTC	4 cut(s)	205, 259, 358, 1191
BfaI	CTAG	5 cut(s)	258, 374, 411, 543, 1079
BfrI	CTTAAG	2 cut(s)	922, 1202
BfuI	GTATCC	1 cut(s)	38
BglII	AGATCT	1 cut(s)	744
BisI	GCNGC	3 cut(s)	234, 324, 694
BlsI	GCNGC	3 cut(s)	235, 325, 695
Bme1390I	CCNGG	1 cut(s)	1293
Bme18I	GGWCC	5 cut(s)	111, 190, 391, 918, 1148
BmeRI	GACNNNNNGTC	1 cut(s)	583
BmeT110I	CYCGRG	2 cut(s)	287, 532
BmgBI	CACGTC	1 cut(s)	1280
BmgT120I	GGNCC	6 cut(s)	111, 190, 391, 918, 1148, 1307
BmiI	GGNNCC	2 cut(s)	393, 1384
BmrFI	CCNGG	1 cut(s)	1293
BmsI	GCATC	1 cut(s)	810
BpuEI	CTTGAG	2 cut(s)	340, 596
BsaAI	YACGTR	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	852
BsaHI	GRCGYC	1 cut(s)	1143
BsaI	GGTCTC	2 cut(s)	259, 358
BsaXI	ACNNNNNCTCC	2 cut(s)	185, 215
Bse1I	ACTGG	2 cut(s)	114, 1234
Bse8I	GATNNNNATC	1 cut(s)	852
BseBI	CCWGG	1 cut(s)	1293
BseGI	GGATG	1 cut(s)	1417
BseJI	GATNNNNATC	1 cut(s)	852
BseMII	CTCAG	1 cut(s)	1004
BseNI	ACTGG	2 cut(s)	114, 1234
BseRI	GAGGAG	3 cut(s)	694, 1046, 1049
BseXI	GCAGC	3 cut(s)	220, 335, 680
Bsh1236I	CGCG	1 cut(s)	350
Bsh1285I	CGRYCG	2 cut(s)	271, 330
BshFI	GGCC	3 cut(s)	762, 1291, 1309
BsiEI	CGRYCG	2 cut(s)	271, 330
BsiHKCI	CYCGRG	2 cut(s)	287, 532
BsiSI	CCGG	1 cut(s)	663
BslFI	GGGAC	1 cut(s)	1290
BsmAI	GTCTC	4 cut(s)	205, 259, 358, 1191
BsmFI	GGGAC	1 cut(s)	1290
BsnI	GGCC	3 cut(s)	762, 1291, 1309
Bso31I	GGTCTC	2 cut(s)	259, 358
BsoBI	CYCGRG	2 cut(s)	287, 532
Bsp1407I	TGTACA	1 cut(s)	1414
Bsp143I	GATC	9 cut(s)	212, 339, 564, 744, 847, 875, 967, 1154, 1432
BspACI	CCGC	3 cut(s)	326, 350, 504
BspANI	GGCC	3 cut(s)	762, 1291, 1309
BspCNI	CTCAG	1 cut(s)	1005
BspFNI	CGCG	1 cut(s)	350
BspLI	GGNNCC	2 cut(s)	393, 1384
BspPI	GGATC	5 cut(s)	207, 572, 883, 962, 1427
BspTI	CTTAAG	2 cut(s)	922, 1202
BspTNI	GGTCTC	2 cut(s)	259, 358
BsrGI	TGTACA	1 cut(s)	1414
BsrI	ACTGG	2 cut(s)	114, 1234
BssMI	GATC	9 cut(s)	212, 339, 564, 744, 847, 875, 967, 1154, 1432
BssNI	GRCGYC	1 cut(s)	1143
BssSI	CACGAG	1 cut(s)	499
Bst2BI	CACGAG	1 cut(s)	499
Bst2UI	CCWGG	1 cut(s)	1293
Bst4CI	ACNGT	2 cut(s)	269, 635
Bst6I	CTCTTC	1 cut(s)	1194
BstACI	GRCGYC	1 cut(s)	1143
BstAFI	CTTAAG	2 cut(s)	922, 1202
BstAUI	TGTACA	1 cut(s)	1414
BstBAI	YACGTR	1 cut(s)	187
BstC8I	GCNNGC	1 cut(s)	1244
BstDEI	CTNAG	5 cut(s)	126, 620, 905, 1013, 1194
BstF5I	GGATG	1 cut(s)	1417
BstFNI	CGCG	1 cut(s)	350
BstKTI	GATC	9 cut(s)	215, 342, 567, 747, 850, 878, 970, 1157, 1435
BstMAI	GTCTC	4 cut(s)	205, 259, 358, 1191
BstMBI	GATC	9 cut(s)	212, 339, 564, 744, 847, 875, 967, 1154, 1432
BstMCI	CGRYCG	2 cut(s)	271, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	547
BstNI	CCWGG	1 cut(s)	1293
BstNSI	RCATGY	1 cut(s)	1031
BstSCI	CCNGG	1 cut(s)	1291
BstUI	CGCG	1 cut(s)	350
BstV1I	GCAGC	3 cut(s)	220, 335, 680
BstX2I	RGATCY	3 cut(s)	212, 744, 967
BstYI	RGATCY	3 cut(s)	212, 744, 967
BsuI	GTATCC	1 cut(s)	38
BsuRI	GGCC	3 cut(s)	762, 1291, 1309
BtrI	CACGTC	1 cut(s)	1280
BtsCI	GGATG	1 cut(s)	1417
BtsIMutI	CAGTG	4 cut(s)	121, 335, 485, 1227
Cac8I	GCNNGC	1 cut(s)	1244
Cfr13I	GGNCC	6 cut(s)	111, 190, 391, 918, 1148, 1307
CseI	GACGC	2 cut(s)	408, 1132
Csp6I	GTAC	4 cut(s)	119, 184, 1123, 1415
CviAII	CATG	6 cut(s)	712, 1028, 1033, 1304, 1336, 1387
CviQI	GTAC	4 cut(s)	119, 184, 1123, 1415
DdeI	CTNAG	5 cut(s)	126, 620, 905, 1013, 1194
DpnI	GATC	9 cut(s)	214, 341, 566, 746, 849, 877, 969, 1156, 1434
DpnII	GATC	9 cut(s)	212, 339, 564, 744, 847, 875, 967, 1154, 1432
DraI	TTTAAA	1 cut(s)	751
DraIII	CACNNNGTG	1 cut(s)	1009
DrdI	GACNNNNNNGTC	1 cut(s)	197
DriI	GACNNNNNGTC	1 cut(s)	583
DseDI	GACNNNNNNGTC	1 cut(s)	197
EaeI	YGGCCR	1 cut(s)	760
Eam1104I	CTCTTC	1 cut(s)	1194
Eam1105I	GACNNNNNGTC	1 cut(s)	583
EarI	CTCTTC	1 cut(s)	1194
Eco31I	GGTCTC	2 cut(s)	259, 358
Eco32I	GATATC	2 cut(s)	263, 1099
Eco47I	GGWCC	5 cut(s)	111, 190, 391, 918, 1148
Eco57I	CTGAAG	3 cut(s)	509, 929, 1087
Eco88I	CYCGRG	2 cut(s)	287, 532
EcoO109I	RGGNCCY	1 cut(s)	918
EcoRI	GAATTC	1 cut(s)	344
EcoRII	CCWGG	1 cut(s)	1291
EcoRV	GATATC	2 cut(s)	263, 1099
FaeI	CATG	6 cut(s)	715, 1031, 1036, 1307, 1339, 1390
FaqI	GGGAC	1 cut(s)	1290
FatI	CATG	6 cut(s)	711, 1027, 1032, 1303, 1335, 1386
FauI	CCCGC	1 cut(s)	497
Fnu4HI	GCNGC	3 cut(s)	234, 324, 694
FokI	GGATG	1 cut(s)	1424
Fsp4HI	GCNGC	3 cut(s)	234, 324, 694
FspBI	CTAG	5 cut(s)	258, 374, 411, 543, 1079
GluI	GCNGC	3 cut(s)	234, 324, 694
HaeIII	GGCC	3 cut(s)	762, 1291, 1309
HapII	CCGG	1 cut(s)	663
HgaI	GACGC	2 cut(s)	408, 1132
Hin1I	GRCGYC	1 cut(s)	1143
Hin1II	CATG	6 cut(s)	715, 1031, 1036, 1307, 1339, 1390
HincII	GTYRAC	1 cut(s)	1089
HindII	GTYRAC	1 cut(s)	1089
HinfI	GANTC	6 cut(s)	332, 482, 584, 616, 853, 1267
HpaI	GTTAAC	1 cut(s)	1089
HpaII	CCGG	1 cut(s)	663
Hpy166II	GTNNAC	4 cut(s)	119, 190, 1089, 1151
Hpy188I	TCNGA	8 cut(s)	69, 205, 313, 391, 653, 852, 948, 990
Hpy8I	GTNNAC	4 cut(s)	119, 190, 1089, 1151
Hpy99I	CGWCG	2 cut(s)	424, 1148
HpyAV	CCTTC	4 cut(s)	405, 866, 901, 953
HpyCH4III	ACNGT	2 cut(s)	269, 635
HpyCH4IV	ACGT	5 cut(s)	186, 579, 810, 1085, 1279
HpyCH4V	TGCA	2 cut(s)	445, 1027
HpyF10VI	GCNNNNNNNGC	1 cut(s)	547
HpyF3I	CTNAG	5 cut(s)	126, 620, 905, 1013, 1194
HpySE526I	ACGT	5 cut(s)	186, 579, 810, 1085, 1279
Hsp92I	GRCGYC	1 cut(s)	1143
Hsp92II	CATG	6 cut(s)	715, 1031, 1036, 1307, 1339, 1390
KspAI	GTTAAC	1 cut(s)	1089
Kzo9I	GATC	9 cut(s)	212, 339, 564, 744, 847, 875, 967, 1154, 1432
LmnI	GCTCC	4 cut(s)	1059, 1300, 1327, 1382
Lsp1109I	GCAGC	3 cut(s)	220, 335, 680
LweI	GCATC	1 cut(s)	810
MaeI	CTAG	5 cut(s)	258, 374, 411, 543, 1079
MaeII	ACGT	5 cut(s)	186, 579, 810, 1085, 1279
MaeIII	GTNAC	3 cut(s)	272, 333, 1392
MalI	GATC	9 cut(s)	214, 341, 566, 746, 849, 877, 969, 1156, 1434
MboI	GATC	9 cut(s)	212, 339, 564, 744, 847, 875, 967, 1154, 1432
MboII	GAAGA	5 cut(s)	502, 857, 977, 1093, 1181
MfeI	CAATTG	1 cut(s)	446
MflI	RGATCY	3 cut(s)	212, 744, 967
MlsI	TGGCCA	1 cut(s)	762
MluNI	TGGCCA	1 cut(s)	762
MlyI	GAGTC	3 cut(s)	341, 593, 625
MmeI	TCCRAC	4 cut(s)	55, 228, 542, 629
Mox20I	TGGCCA	1 cut(s)	762
MroXI	GAANNNNTTC	2 cut(s)	19, 163
MscI	TGGCCA	1 cut(s)	762
Msp20I	TGGCCA	1 cut(s)	762
MspA1I	CMGCKG	1 cut(s)	326
MspCI	CTTAAG	2 cut(s)	922, 1202
MspI	CCGG	1 cut(s)	663
MspR9I	CCNGG	1 cut(s)	1293
MunI	CAATTG	1 cut(s)	446
MvaI	CCWGG	1 cut(s)	1293
MvnI	CGCG	1 cut(s)	350
MwoI	GCNNNNNNNGC	1 cut(s)	547
NdeII	GATC	9 cut(s)	212, 339, 564, 744, 847, 875, 967, 1154, 1432
NlaIII	CATG	6 cut(s)	715, 1031, 1036, 1307, 1339, 1390
NlaIV	GGNNCC	2 cut(s)	393, 1384
NmuCI	GTSAC	1 cut(s)	333
NspI	RCATGY	1 cut(s)	1031
PaeR7I	CTCGAG	2 cut(s)	287, 532
PdmI	GAANNNNTTC	2 cut(s)	19, 163
PfeI	GAWTC	3 cut(s)	482, 853, 1267
PkrI	GCNGC	3 cut(s)	235, 325, 695
PleI	GAGTC	3 cut(s)	340, 592, 624
PpsI	GAGTC	3 cut(s)	340, 592, 624
Ppu21I	YACGTR	1 cut(s)	187
PpuMI	RGGWCCY	1 cut(s)	918
PshBI	ATTAAT	1 cut(s)	627
PsiI	TTATAA	1 cut(s)	1182
Psp1406I	AACGTT	1 cut(s)	1085
Psp5II	RGGWCCY	1 cut(s)	918
Psp6I	CCWGG	1 cut(s)	1291
PspGI	CCWGG	1 cut(s)	1291
PspN4I	GGNNCC	2 cut(s)	393, 1384
PspPI	GGNCC	6 cut(s)	111, 190, 391, 918, 1148, 1307
PspPPI	RGGWCCY	1 cut(s)	918
PsuI	RGATCY	3 cut(s)	212, 744, 967
RsaI	GTAC	4 cut(s)	120, 185, 1124, 1416
RsaNI	GTAC	4 cut(s)	119, 184, 1123, 1415
SatI	GCNGC	3 cut(s)	234, 324, 694
Sau3AI	GATC	9 cut(s)	212, 339, 564, 744, 847, 875, 967, 1154, 1432
Sau96I	GGNCC	6 cut(s)	111, 190, 391, 918, 1148, 1307
SchI	GAGTC	3 cut(s)	341, 593, 625
ScrFI	CCNGG	1 cut(s)	1293
SfaNI	GCATC	1 cut(s)	810
Sfr274I	CTCGAG	2 cut(s)	287, 532
SinI	GGWCC	5 cut(s)	111, 190, 391, 918, 1148
SlaI	CTCGAG	2 cut(s)	287, 532
SmlI	CTYRAG	6 cut(s)	287, 355, 532, 611, 922, 1202
SmoI	CTYRAG	6 cut(s)	287, 355, 532, 611, 922, 1202
SsiI	CCGC	3 cut(s)	326, 350, 504
SspMI	CTAG	5 cut(s)	258, 374, 411, 543, 1079
StyD4I	CCNGG	1 cut(s)	1291
TaaI	ACNGT	2 cut(s)	269, 635
TaiI	ACGT	5 cut(s)	189, 582, 813, 1088, 1282
TaqII	GACCGA	1 cut(s)	1136
TatI	WGTACW	2 cut(s)	118, 1414
TfiI	GAWTC	3 cut(s)	482, 853, 1267
TscAI	CASTG	4 cut(s)	121, 342, 492, 1234
TseFI	GTSAC	1 cut(s)	333
TseI	GCWGC	3 cut(s)	233, 323, 693
Tsp45I	GTSAC	1 cut(s)	333
TspDTI	ATGAA	4 cut(s)	686, 700, 806, 858
TspRI	CASTG	4 cut(s)	121, 342, 492, 1234
Vha464I	CTTAAG	2 cut(s)	922, 1202
VpaK11BI	GGWCC	5 cut(s)	111, 190, 391, 918, 1148
VspI	ATTAAT	1 cut(s)	627
XapI	RAATTY	5 cut(s)	344, 521, 677, 765, 1037
XbaI	TCTAGA	1 cut(s)	257
XceI	RCATGY	1 cut(s)	1031
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1158
XhoI	CTCGAG	2 cut(s)	287, 532
XmnI	GAANNNNTTC	2 cut(s)	19, 163
XspI	CTAG	5 cut(s)	258, 374, 411, 543, 1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.