Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003556

Physical Location & Seq

Genomic Coordinates Reverse (-)

42510962 .. 42511769

Gene Structure 808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0308300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGCTCGCTTGATTGCATTCTTAGCCATTCTCTTCTTCGTTTCGGCTGCACATTCTGCGCCTTCATGCCCCGTCATAGCCCAGGAGATGGCTCCTTGTCTCACTTTTGTGAAGGGTACAACTGACGAGCTATCTCAGGCTTGTTGCAATGGTGCTAAGGACCTGAGCAACAATGTCCATTCCAACCAAGACAAGAAAGACATATGCCTGTGCCTCAAGGACGCCTTGTCCAAGATTGGAGACTATGAGCCATCTAGAGTCTCTCTTGTTCCCAAGAAATGTGGCCTGAAGCTCAACCTTCCTCCCATCGATCAAAACACCGACTGCTCCAAGTTTGCTCTAATGGGTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

117

Amino Acids

12.62

Weight (kDa)

7.52

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	14 - 98	7.2e-06	Probable lipid transfer
Tryp_alpha_amyl	PF00234	23 - 109	2.1e-09	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56400 AT1G56400 AT2G17305 AT3G29830 AT3G29830 AT3G62230 AT5G54820
fragaria_vesca	FvH4_7g19741
malus_domestica	MD03G1208600.v1.1 MD11G1222600.v1.1 MD11G1222800.v1.1 MD11G1223200.v1.1
prunus_persica	Prupe.4G208100_v2.0.a1 Prupe.4G208200_v2.0.a1 Prupe.4G208300_v2.0.a1
pyrus_communis	pycom03g15720 pycom03g15760 pycom11g19660
rosa_chinensis	RchiOBHm_Chr1g0363631 RchiOBHm_Chr7g0214121
rosa_laevigata	RLG00000008357 RLG00000027555
rosa_multiflora	Rmu_sc0000548.1_g000010 Rmu_sc0000675.1_g000034
rosa_roxburghii	Rroxscaffold_4G00293030
rosa_rugosa	Rorug01G0308300
rosa_samantha	Rh1AG089100 Rh1AG317200 Rh1BG280600 Rh1CG296700 Rh1DG311800 Rh4AG168100 Rh4BG165000
rosa_wichuraiana	Rw1G006910 Rw1G028130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	88
AcuI	CTGAAG	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	118
AfiI	CCNNNNNNNGG	1 cut(s)	88
AhdI	GACNNNNNGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	81
AleI	CACNNNNGTG	1 cut(s)	107
AluBI	AGCT	2 cut(s)	130, 292
AluI	AGCT	2 cut(s)	130, 292
Alw26I	GTCTC	3 cut(s)	104, 234, 265
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	160
BbvI	GCAGC	1 cut(s)	34
BccI	CCATC	3 cut(s)	82, 259, 314
BciT130I	CCWGG	1 cut(s)	83
BcoDI	GTCTC	3 cut(s)	104, 234, 265
BfaI	CTAG	1 cut(s)	255
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	1 cut(s)	83
Bme18I	GGWCC	1 cut(s)	160
BmeRI	GACNNNNNGTC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	1 cut(s)	83
Bpu10I	CCTNAGC	2 cut(s)	156, 164
BpuEI	CTTGAG	1 cut(s)	200
Bsa29I	ATCGAT	1 cut(s)	309
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
Bse3DI	GCAATG	1 cut(s)	154
BseBI	CCWGG	1 cut(s)	83
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMI	GCAATG	1 cut(s)	154
BseMII	CTCAG	2 cut(s)	149, 155
BseXI	GCAGC	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	33
BshFI	GGCC	1 cut(s)	285
BshVI	ATCGAT	1 cut(s)	309
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	3 cut(s)	104, 234, 265
BsmI	GAATGC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	285
Bsp143I	GATC	1 cut(s)	310
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	2 cut(s)	148, 156
BspDI	ATCGAT	1 cut(s)	309
BspLI	GGNNCC	1 cut(s)	93
BsrDI	GCAATG	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	1 cut(s)	310
BssNI	GRCGYC	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	83
Bst6I	CTCTTC	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	222
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	4 cut(s)	22, 135, 156, 164
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	1 cut(s)	313
BstMAI	GTCTC	3 cut(s)	104, 234, 265
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 56
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	34
Bsu15I	ATCGAT	1 cut(s)	309
BsuRI	GGCC	1 cut(s)	285
BsuTUI	ATCGAT	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	7
CfoI	GCGC	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	160
ClaI	ATCGAT	1 cut(s)	309
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	117
CspCI	CAANNNNNGTGG	2 cut(s)	262, 297
CviAII	CATG	1 cut(s)	66
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	4 cut(s)	22, 135, 156, 164
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
DriI	GACNNNNNGTC	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	38
Eam1105I	GACNNNNNGTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	38
Eco47I	GGWCC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	81
FaeI	CATG	1 cut(s)	69
FaiI	YATR	5 cut(s)	67, 77, 203, 205, 246
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FatI	CATG	1 cut(s)	65
FauNDI	CATATG	1 cut(s)	203
Fnu4HI	GCNGC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	285
HgaI	GACGC	1 cut(s)	230
HhaI	GCGC	1 cut(s)	61
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	69
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HinfI	GANTC	1 cut(s)	258
Hpy188III	TCNNGA	1 cut(s)	255
HpyAV	CCTTC	3 cut(s)	72, 106, 308
HpyCH4V	TGCA	3 cut(s)	17, 50, 147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 56
HpyF3I	CTNAG	4 cut(s)	22, 135, 156, 164
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	69
HspAI	GCGC	1 cut(s)	59
Kzo9I	GATC	1 cut(s)	310
LmnI	GCTCC	2 cut(s)	97, 332
LpnPI	CCDG	6 cut(s)	68, 95, 122, 176, 221, 299
Lsp1109I	GCAGC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	255
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	2 cut(s)	25, 28
MlyI	GAGTC	1 cut(s)	267
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	2 cut(s)	224, 312
MslI	CAYNNNNRTG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	23, 56
NdeI	CATATG	1 cut(s)	203
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	1 cut(s)	69
NlaIV	GGNNCC	1 cut(s)	93
OliI	CACNNNNGTG	1 cut(s)	107
PctI	GAATGC	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	49
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
PpuMI	RGGWCCY	1 cut(s)	160
Psp5II	RGGWCCY	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	1 cut(s)	160
PspPPI	RGGWCCY	1 cut(s)	160
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
RseI	CAYNNNNRTG	1 cut(s)	107
SatI	GCNGC	1 cut(s)	48
Sau3AI	GATC	1 cut(s)	310
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	1 cut(s)	267
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	4 cut(s)	132, 165, 294, 300
SinI	GGWCC	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	81
TaqI	TCGA	1 cut(s)	309
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	1 cut(s)	54
Van91I	CCANNNNNTGG	1 cut(s)	88
VpaK11BI	GGWCC	1 cut(s)	160
XbaI	TCTAGA	1 cut(s)	254
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.