Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003556

Physical Location & Seq

Genomic Coordinates Reverse (-)

29368040 .. 29368538

Gene Structure 499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008357

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCTGTATTCGACATTGGAGCAGGAGCGTTGGAAGAGGCATACCTTGAGTTTGGACTCGAGGAATACCTCCATCAACTTCCCACCGTTAGGATACTTACAGTTTGCACATACATGCTTCAGGTACCCACCTTTGATTCCCTATTCAACTTACTGTTCTTCCATTGGAACTGGAATCTAGCTTCTGATGTAACTCCTTTCTTGGGTATGGCGCATTTAACTCTGAGGACTGCAATGCTAAGTTGTGAGCAAAAAGGGATCCAGTATCTCCTCATAAGTAATTACCCTTGCTTGCAGGTTTTGATCATCCAGATAGTCCCTCAGAGAATTGTTGATCTTGATGTGAGAAACTATTTTCTTAGTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

123

Amino Acids

14.06

Weight (kDa)

4.7

Isoelectric Point (pI)

44.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56400 AT1G56400 AT2G17305 AT3G29830 AT3G29830 AT3G62230 AT5G54820
fragaria_vesca	FvH4_7g19741
malus_domestica	MD03G1208600.v1.1 MD11G1222600.v1.1 MD11G1222800.v1.1 MD11G1223200.v1.1
prunus_persica	Prupe.4G208100_v2.0.a1 Prupe.4G208200_v2.0.a1 Prupe.4G208300_v2.0.a1
pyrus_communis	pycom03g15720 pycom03g15760 pycom11g19660
rosa_chinensis	RchiOBHm_Chr1g0363631 RchiOBHm_Chr7g0214121
rosa_laevigata	RLG00000008357 RLG00000027555
rosa_multiflora	Rmu_sc0000548.1_g000010 Rmu_sc0000675.1_g000034
rosa_roxburghii	Rroxscaffold_4G00293030
rosa_rugosa	Rorug01G0308300
rosa_samantha	Rh1AG089100 Rh1AG317200 Rh1BG280600 Rh1CG296700 Rh1DG311800 Rh4AG168100 Rh4BG165000
rosa_wichuraiana	Rw1G006910 Rw1G028130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	286
Acc65I	GGTACC	1 cut(s)	124
AccB1I	GGYRCC	1 cut(s)	124
AclWI	GGATC	2 cut(s)	253, 266
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	2 cut(s)	90, 203
AgsI	TTSAA	1 cut(s)	148
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
AlwI	GGATC	2 cut(s)	253, 266
Ama87I	CYCGRG	1 cut(s)	59
Asp718I	GGTACC	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	59
BamHI	GGATCC	1 cut(s)	258
BanI	GGYRCC	1 cut(s)	124
BccI	CCATC	1 cut(s)	81
BciVI	GTATCC	1 cut(s)	87
BclI	TGATCA	1 cut(s)	303
BfaI	CTAG	1 cut(s)	179
BfuAI	ACCTGC	1 cut(s)	286
BfuI	GTATCC	1 cut(s)	87
BmeT110I	CYCGRG	1 cut(s)	59
BmiI	GGNNCC	2 cut(s)	126, 260
BpuEI	CTTGAG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 203
Bse1I	ACTGG	2 cut(s)	176, 262
Bse3DI	GCAATG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	306
BseLI	CCNNNNNNNGG	2 cut(s)	90, 203
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	2 cut(s)	215, 335
BseNI	ACTGG	2 cut(s)	176, 262
BseRI	GAGGAG	1 cut(s)	260
BshNI	GGYRCC	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	2 cut(s)	90, 203
BsmFI	GGGAC	1 cut(s)	302
BsoBI	CYCGRG	1 cut(s)	59
Bsp143I	GATC	3 cut(s)	258, 303, 334
BspCNI	CTCAG	2 cut(s)	216, 334
BspLI	GGNNCC	2 cut(s)	126, 260
BspMI	ACCTGC	1 cut(s)	286
BspPI	GGATC	2 cut(s)	253, 266
BspT107I	GGYRCC	1 cut(s)	124
BsrDI	GCAATG	1 cut(s)	240
BsrI	ACTGG	2 cut(s)	176, 262
BssMI	GATC	3 cut(s)	258, 303, 334
Bst4CI	ACNGT	3 cut(s)	88, 103, 156
Bst6I	CTCTTC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	293
BstDEI	CTNAG	4 cut(s)	224, 239, 321, 359
BstF5I	GGATG	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	3 cut(s)	261, 306, 337
BstMBI	GATC	3 cut(s)	258, 303, 334
BstNSI	RCATGY	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BsuI	GTATCC	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	306
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	293
CfoI	GCGC	1 cut(s)	214
Csp6I	GTAC	1 cut(s)	125
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	2 cut(s)	5, 182
CviKI_1	RGCY	2 cut(s)	5, 182
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	4 cut(s)	224, 239, 321, 359
DpnI	GATC	3 cut(s)	260, 305, 336
DpnII	GATC	3 cut(s)	258, 303, 334
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	104
Eco88I	CYCGRG	1 cut(s)	59
FaeI	CATG	1 cut(s)	118
FaiI	YATR	7 cut(s)	43, 112, 116, 209, 275, 365, 367
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	1 cut(s)	114
FbaI	TGATCA	1 cut(s)	303
FokI	GGATG	1 cut(s)	293
FspBI	CTAG	1 cut(s)	179
GlaI	GCGC	1 cut(s)	213
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	1 cut(s)	118
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HinfI	GANTC	3 cut(s)	57, 137, 175
Hpy188I	TCNGA	3 cut(s)	187, 225, 324
Hpy188III	TCNNGA	2 cut(s)	310, 338
HpyCH4III	ACNGT	3 cut(s)	88, 103, 156
HpyCH4V	TGCA	3 cut(s)	108, 233, 295
HpyF3I	CTNAG	4 cut(s)	224, 239, 321, 359
Hsp92II	CATG	1 cut(s)	118
HspAI	GCGC	1 cut(s)	212
KpnI	GGTACC	1 cut(s)	128
Ksp22I	TGATCA	1 cut(s)	303
Kzo9I	GATC	3 cut(s)	258, 303, 334
LmnI	GCTCC	2 cut(s)	20, 26
LpnPI	CCDG	6 cut(s)	9, 107, 157, 275, 281, 323
MaeI	CTAG	1 cut(s)	179
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	3 cut(s)	260, 305, 336
MboI	GATC	3 cut(s)	258, 303, 334
MboII	GAAGA	2 cut(s)	47, 151
MflI	RGATCY	1 cut(s)	258
MluCI	AATT	2 cut(s)	280, 327
MlyI	GAGTC	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	6 cut(s)	31, 55, 80, 219, 281, 330
MseI	TTAA	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	113
NdeII	GATC	3 cut(s)	258, 303, 334
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	2 cut(s)	126, 260
NspI	RCATGY	1 cut(s)	118
PaeR7I	CTCGAG	1 cut(s)	59
PfeI	GAWTC	2 cut(s)	137, 175
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	126, 260
PspXI	VCTCGAGB	1 cut(s)	59
PsuI	RGATCY	1 cut(s)	258
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
RseI	CAYNNNNRTG	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	218
Sau3AI	GATC	3 cut(s)	258, 303, 334
SchI	GAGTC	1 cut(s)	51
SetI	ASST	6 cut(s)	48, 72, 126, 134, 184, 300
Sfr274I	CTCGAG	1 cut(s)	59
SlaI	CTCGAG	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	47, 59
SmoI	CTYRAG	2 cut(s)	47, 59
Sse9I	AATT	2 cut(s)	280, 327
SspMI	CTAG	1 cut(s)	179
TaaI	ACNGT	3 cut(s)	88, 103, 156
TaqI	TCGA	2 cut(s)	12, 60
TasI	AATT	2 cut(s)	280, 327
TfiI	GAWTC	2 cut(s)	137, 175
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
XceI	RCATGY	1 cut(s)	118
XhoI	CTCGAG	1 cut(s)	59
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.