Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003556

Physical Location & Seq

Genomic Coordinates Reverse (-)

55008133 .. 55009725

Gene Structure 1593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58837

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGACATGCTCTCATTTTTGCCTGACCATCTTCTTGTAATCATATTGTCTTTCCTTGCTTTCCAAGAGGCGGGCAGAACTTCAGTTCTCTCAAGGAGATGGCAGAACATTTGGCGTCAAACCAGAAATATTGAATTTAATGAGCGTTTCTTTTCCTACATTAGTGCGGATGATGAGGCTAGGAGAATAGCTTTCGTAAACTTTGTCCAAAACTGGACTGATAACTATCAACCTTCGGTTTTGGACAGAGTTTGTATAACATTTTCTCGGCCTGGAAACTTCCTTGTGCTTGTGGAAGATTGTATCAGGTTTGCTGTTACGCGTGGAGTGAAGGTTCTAGGGCTTGATTTCTCTGATCCATTATGGAATGATGAACTTCTAGAACTTGGCAATTATCCTGAACCTGCATATGTTCTGCCTCAGTTTGTCTATCAACATGGGGTTCTTGAATCTCTAACCCTCAGTTCTTGCAACATCAACTTGCCCGAGATTATCAACTTTCATCTCTTGAAGCATCTTGCATTGGGTTGGATTGAACTGCCTCTACCTACACTCTCTGTGCTACTAAACAAGTTTCCATTGCTCGAAAGCCTGAGTGTAAAGAACTGCTGGAACACAGATGGTCTTCAAGTTGGTGGACAAAACTTGAGGTTAAGAAGCTTAGTCGTTGAGAAGTTCATCATGTCTGAGAATCCTTGGATTGAAATTGAGGCACCACATCTGCGGTACTTGAAGTATTCAGGGACAATGGCTGTGTTTGATATCGAAGCTGGGGAGTTGGAAGAGGCCTACCTTGACTTTGGACTCGAGTATGAAGGCAACGAAGGAATGGGGGATCTCCTCTATCAACTCCTCCACCAACTTCCTGTTAGAACACTCACAGTATGCACGTATATGCTTCAGGTTCTGCCATTGGAACTGATATCCAATGGTGTAACTCCTGTCTTCGGGGTGGCGAAGTTAACTCTGAGGACCGCAATGCTCAGTTGTGAGCAGAAAGGGGTCAAGTATCTCCTCAGAAGTTGCCCTGTCTTGCAAGCTTTGACCATCCAAATAGTCCCTCAGAGACTAGTTGATCTTGATGAAGGTCAACCGGATGATGTACGTCATGTATGGACTCTAAATGCACTGGAGTACCATTGTATAAACCAAACATTGAGAGTTGTACAGGTGAAAGGTTACACAGGTACGAGACACGAAATTGGCTTTCTGAAGTATCTCTTTTGCCGTGGCCGTGTGCTCGAAAAACTTCATATTAGTATCGGCGAGGAGCTTTTGAACCAGAGGAGTATTGCTGAAAATCGGCAACTTGTAATTCAAACATTTCAAGGTTTGAGAAGAGCTTCAAATAATCTCCGAATAAATACATATGGTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

459

Amino Acids

52.76

Weight (kDa)

5.76

Isoelectric Point (pI)

49.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	4 - 41	2.1e-06	F-box domain
LRR_At1g61320_AtMIF1	PF23622	101 - 259	3.6e-06	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	127 - 245	4.2e-06	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	381 - 419	1.1e-07	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56400 AT1G56400 AT2G17305 AT3G29830 AT3G29830 AT3G62230 AT5G54820
fragaria_vesca	FvH4_7g19741
malus_domestica	MD03G1208600.v1.1 MD11G1222600.v1.1 MD11G1222800.v1.1 MD11G1223200.v1.1
prunus_persica	Prupe.4G208100_v2.0.a1 Prupe.4G208200_v2.0.a1 Prupe.4G208300_v2.0.a1
pyrus_communis	pycom03g15720 pycom03g15760 pycom11g19660
rosa_chinensis	RchiOBHm_Chr1g0363631 RchiOBHm_Chr7g0214121
rosa_laevigata	RLG00000008357 RLG00000027555
rosa_multiflora	Rmu_sc0000548.1_g000010 Rmu_sc0000675.1_g000034
rosa_roxburghii	Rroxscaffold_4G00293030
rosa_rugosa	Rorug01G0308300
rosa_samantha	Rh1AG089100 Rh1AG317200 Rh1BG280600 Rh1CG296700 Rh1DG311800 Rh4AG168100 Rh4BG165000
rosa_wichuraiana	Rw1G006910 Rw1G028130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	412
AccB1I	GGYRCC	1 cut(s)	712
AccII	CGCG	1 cut(s)	322
AciI	CCGC	4 cut(s)	71, 167, 724, 975
AclWI	GGATC	2 cut(s)	350, 843
AcoI	YGGCCR	1 cut(s)	1231
AcsI	RAATTY	1 cut(s)	134
AcuI	CTGAAG	3 cut(s)	66, 884, 1232
AcyI	GRCGYC	1 cut(s)	115
AfaI	GTAC	5 cut(s)	728, 1104, 1136, 1167, 1189
AfiI	CCNNNNNNNGG	2 cut(s)	70, 947
AflIII	ACRYGT	1 cut(s)	320
AhlI	ACTAGT	1 cut(s)	1069
AjnI	CCWGG	1 cut(s)	271
AloI	GAACNNNNNNTCC	2 cut(s)	318, 350
AluBI	AGCT	6 cut(s)	191, 660, 770, 1040, 1273, 1343
AluI	AGCT	6 cut(s)	191, 660, 770, 1040, 1273, 1343
Alw21I	GWGCWC	1 cut(s)	1242
Alw26I	GTCTC	2 cut(s)	1060, 1186
AlwI	GGATC	2 cut(s)	350, 843
AlwNI	CAGNNNCTG	1 cut(s)	907
Ama87I	CYCGRG	2 cut(s)	485, 806
AoxI	GGCC	3 cut(s)	269, 786, 1231
ApoI	RAATTY	1 cut(s)	134
Asp700I	GAANNNNTTC	2 cut(s)	1248, 1342
AspS9I	GGNCC	1 cut(s)	972
AsuHPI	GGTGA	1 cut(s)	1183
AvaI	CYCGRG	2 cut(s)	485, 806
AvaII	GGWCC	1 cut(s)	972
BaeI	ACNNNNGTAYC	2 cut(s)	1118, 1151
BanI	GGYRCC	1 cut(s)	712
BbsI	GAAGAC	2 cut(s)	617, 937
Bbv12I	GWGCWC	1 cut(s)	1242
BccI	CCATC	4 cut(s)	36, 93, 614, 1055
BceAI	ACGGC	2 cut(s)	1212, 1218
BciT130I	CCWGG	1 cut(s)	273
BcoDI	GTCTC	2 cut(s)	1060, 1186
BcuI	ACTAGT	1 cut(s)	1069
BfaI	CTAG	4 cut(s)	180, 338, 380, 1070
BfuAI	ACCTGC	1 cut(s)	412
Bme1390I	CCNGG	1 cut(s)	273
Bme18I	GGWCC	1 cut(s)	972
BmeT110I	CYCGRG	2 cut(s)	485, 806
BmgT120I	GGNCC	1 cut(s)	972
BmiI	GGNNCC	1 cut(s)	714
BmrFI	CCNGG	1 cut(s)	273
BmsI	GCATC	1 cut(s)	523
BpiI	GAAGAC	2 cut(s)	617, 937
BpmI	CTGGAG	1 cut(s)	1151
BpuEI	CTTGAG	2 cut(s)	76, 667
BsaAI	YACGTR	1 cut(s)	891
BsaBI	GATNNNNATC	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	115
BsaJI	CCNNGG	2 cut(s)	695, 1228
BsaWI	WCCGGW	1 cut(s)	1093
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 947
Bse1I	ACTGG	2 cut(s)	218, 1134
Bse3DI	GCAATG	2 cut(s)	578, 984
Bse8I	GATNNNNATC	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	695, 1228
BseGI	GGATG	3 cut(s)	175, 1047, 1102
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	2 cut(s)	70, 947
BseMI	GCAATG	2 cut(s)	578, 984
BseMII	CTCAG	8 cut(s)	434, 475, 584, 678, 959, 997, 1030, 1076
BseNI	ACTGG	2 cut(s)	218, 1134
BseRI	GAGGAG	5 cut(s)	830, 842, 1004, 1283, 1300
BseYI	CCCAGC	1 cut(s)	770
Bsh1236I	CGCG	1 cut(s)	322
BshFI	GGCC	3 cut(s)	271, 788, 1233
BshNI	GGYRCC	1 cut(s)	712
BsiHKAI	GWGCWC	1 cut(s)	1242
BsiHKCI	CYCGRG	2 cut(s)	485, 806
BsiSI	CCGG	1 cut(s)	1094
BslFI	GGGAC	2 cut(s)	757, 1043
BslI	CCNNNNNNNGG	2 cut(s)	70, 947
BsmAI	GTCTC	2 cut(s)	1060, 1186
BsmFI	GGGAC	2 cut(s)	757, 1043
BsnI	GGCC	3 cut(s)	271, 788, 1233
BsoBI	CYCGRG	2 cut(s)	485, 806
Bsp1286I	GDGCHC	1 cut(s)	1242
Bsp1407I	TGTACA	1 cut(s)	1165
Bsp143I	GATC	3 cut(s)	355, 835, 1075
BspACI	CCGC	4 cut(s)	71, 167, 724, 975
BspANI	GGCC	3 cut(s)	271, 788, 1233
BspCNI	CTCAG	8 cut(s)	433, 474, 585, 679, 960, 996, 1029, 1075
BspFNI	CGCG	1 cut(s)	322
BspLI	GGNNCC	1 cut(s)	714
BspMI	ACCTGC	1 cut(s)	412
BspPI	GGATC	2 cut(s)	350, 843
BspQI	GCTCTTC	1 cut(s)	1333
BspT107I	GGYRCC	1 cut(s)	712
BsrDI	GCAATG	2 cut(s)	578, 984
BsrGI	TGTACA	1 cut(s)	1165
BsrI	ACTGG	2 cut(s)	218, 1134
BssECI	CCNNGG	2 cut(s)	695, 1228
BssMI	GATC	3 cut(s)	355, 835, 1075
BssNI	GRCGYC	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	695
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	883
Bst6I	CTCTTC	2 cut(s)	777, 1333
BstACI	GRCGYC	1 cut(s)	115
BstAUI	TGTACA	1 cut(s)	1165
BstBAI	YACGTR	1 cut(s)	891
BstC8I	GCNNGC	2 cut(s)	73, 1038
BstDEI	CTNAG	9 cut(s)	420, 461, 593, 661, 687, 968, 983, 1016, 1062
BstDSI	CCRYGG	1 cut(s)	1228
BstF5I	GGATG	3 cut(s)	175, 1047, 1102
BstFNI	CGCG	1 cut(s)	322
BstKTI	GATC	3 cut(s)	358, 838, 1078
BstMAI	GTCTC	2 cut(s)	1060, 1186
BstMBI	GATC	3 cut(s)	355, 835, 1075
BstNI	CCWGG	1 cut(s)	273
BstNSI	RCATGY	1 cut(s)	10
BstSCI	CCNGG	1 cut(s)	271
BstUI	CGCG	1 cut(s)	322
BstV2I	GAAGAC	2 cut(s)	617, 937
BstX2I	RGATCY	1 cut(s)	835
BstYI	RGATCY	1 cut(s)	835
BsuRI	GGCC	3 cut(s)	271, 788, 1233
BtgI	CCRYGG	1 cut(s)	1228
BtsCI	GGATG	3 cut(s)	175, 1047, 1102
BtsIMutI	CAGTG	1 cut(s)	1127
BveI	ACCTGC	1 cut(s)	412
Cac8I	GCNNGC	2 cut(s)	73, 1038
CaiI	CAGNNNCTG	1 cut(s)	907
Cfr13I	GGNCC	1 cut(s)	972
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	5 cut(s)	727, 1103, 1135, 1166, 1188
CviAII	CATG	4 cut(s)	7, 437, 682, 1109
CviQI	GTAC	5 cut(s)	727, 1103, 1135, 1166, 1188
DdeI	CTNAG	9 cut(s)	420, 461, 593, 661, 687, 968, 983, 1016, 1062
DpnI	GATC	3 cut(s)	357, 837, 1077
DpnII	GATC	3 cut(s)	355, 835, 1075
EaeI	YGGCCR	1 cut(s)	1231
Eam1104I	CTCTTC	2 cut(s)	777, 1333
EarI	CTCTTC	2 cut(s)	777, 1333
Eco130I	CCWWGG	1 cut(s)	695
Eco147I	AGGCCT	1 cut(s)	788
Eco32I	GATATC	2 cut(s)	763, 924
Eco47I	GGWCC	1 cut(s)	972
Eco57I	CTGAAG	3 cut(s)	66, 884, 1232
Eco88I	CYCGRG	2 cut(s)	485, 806
EcoRII	CCWGG	1 cut(s)	271
EcoRV	GATATC	2 cut(s)	763, 924
EcoT14I	CCWWGG	1 cut(s)	695
ErhI	CCWWGG	1 cut(s)	695
FaeI	CATG	4 cut(s)	10, 440, 685, 1112
FalI	AAGNNNNNCTT	2 cut(s)	1205, 1237
FaqI	GGGAC	2 cut(s)	757, 1043
FatI	CATG	4 cut(s)	6, 436, 681, 1108
FauI	CCCGC	1 cut(s)	64
FauNDI	CATATG	2 cut(s)	409, 1369
FokI	GGATG	3 cut(s)	182, 1034, 1109
FspBI	CTAG	4 cut(s)	180, 338, 380, 1070
GsaI	CCCAGC	1 cut(s)	774
GsuI	CTGGAG	1 cut(s)	1151
HaeIII	GGCC	3 cut(s)	271, 788, 1233
HapII	CCGG	1 cut(s)	1094
HgaI	GACGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	4 cut(s)	10, 440, 685, 1112
HincII	GTYRAC	2 cut(s)	963, 1091
HindII	GTYRAC	2 cut(s)	963, 1091
HindIII	AAGCTT	2 cut(s)	658, 1038
HinfI	GANTC	4 cut(s)	449, 691, 804, 1117
HpaI	GTTAAC	1 cut(s)	963
HpaII	CCGG	1 cut(s)	1094
HphI	GGTGA	1 cut(s)	1183
Hpy166II	GTNNAC	4 cut(s)	199, 638, 963, 1091
Hpy188I	TCNGA	7 cut(s)	355, 688, 969, 1019, 1065, 1212, 1358
Hpy188III	TCNNGA	5 cut(s)	380, 398, 446, 508, 1079
Hpy8I	GTNNAC	4 cut(s)	199, 638, 963, 1091
HpyAV	CCTTC	5 cut(s)	243, 325, 809, 818, 1079
HpyCH4III	ACNGT	1 cut(s)	883
HpyCH4IV	ACGT	2 cut(s)	890, 1105
HpyCH4V	TGCA	6 cut(s)	407, 471, 521, 888, 1036, 1127
HpyF3I	CTNAG	9 cut(s)	420, 461, 593, 661, 687, 968, 983, 1016, 1062
HpySE526I	ACGT	2 cut(s)	890, 1105
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	4 cut(s)	10, 440, 685, 1112
KspAI	GTTAAC	1 cut(s)	963
Kzo9I	GATC	3 cut(s)	355, 835, 1075
LguI	GCTCTTC	1 cut(s)	1333
LmnI	GCTCC	1 cut(s)	1270
LweI	GCATC	1 cut(s)	523
MaeI	CTAG	4 cut(s)	180, 338, 380, 1070
MaeII	ACGT	2 cut(s)	890, 1105
MaeIII	GTNAC	3 cut(s)	316, 934, 1178
MalI	GATC	3 cut(s)	357, 837, 1077
MboI	GATC	3 cut(s)	355, 835, 1075
MboII	GAAGA	6 cut(s)	23, 308, 617, 794, 937, 1350
MflI	RGATCY	1 cut(s)	835
MhlI	GDGCHC	1 cut(s)	1242
MluCI	AATT	5 cut(s)	134, 391, 705, 1200, 1314
MluI	ACGCGT	1 cut(s)	320
MlyI	GAGTC	2 cut(s)	798, 1111
MmeI	TCCRAC	2 cut(s)	509, 759
MroXI	GAANNNNTTC	2 cut(s)	1248, 1342
MseI	TTAA	3 cut(s)	138, 653, 962
MslI	CAYNNNNRTG	1 cut(s)	893
MspI	CCGG	1 cut(s)	1094
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	322
NdeI	CATATG	2 cut(s)	409, 1369
NdeII	GATC	3 cut(s)	355, 835, 1075
NlaIII	CATG	4 cut(s)	10, 440, 685, 1112
NlaIV	GGNNCC	1 cut(s)	714
NmeAIII	GCCGAG	1 cut(s)	247
NspI	RCATGY	1 cut(s)	10
PaeR7I	CTCGAG	1 cut(s)	806
PceI	AGGCCT	1 cut(s)	788
PciSI	GCTCTTC	1 cut(s)	1333
PdmI	GAANNNNTTC	2 cut(s)	1248, 1342
PfeI	GAWTC	2 cut(s)	449, 691
PleI	GAGTC	2 cut(s)	798, 1111
PpsI	GAGTC	2 cut(s)	798, 1111
Ppu21I	YACGTR	1 cut(s)	891
Psp6I	CCWGG	1 cut(s)	271
PspFI	CCCAGC	1 cut(s)	770
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	714
PspPI	GGNCC	1 cut(s)	972
PspXI	VCTCGAGB	1 cut(s)	806
PsrI	GAACNNNNNNTAC	2 cut(s)	528, 560
PstNI	CAGNNNCTG	1 cut(s)	907
PsuI	RGATCY	1 cut(s)	835
RsaI	GTAC	5 cut(s)	728, 1104, 1136, 1167, 1189
RsaNI	GTAC	5 cut(s)	727, 1103, 1135, 1166, 1188
RseI	CAYNNNNRTG	1 cut(s)	893
SapI	GCTCTTC	1 cut(s)	1333
SaqAI	TTAA	3 cut(s)	138, 653, 962
Sau3AI	GATC	3 cut(s)	355, 835, 1075
Sau96I	GGNCC	1 cut(s)	972
SchI	GAGTC	2 cut(s)	798, 1111
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	1242
SfaNI	GCATC	1 cut(s)	523
Sfr274I	CTCGAG	1 cut(s)	806
SinI	GGWCC	1 cut(s)	972
SlaI	CTCGAG	1 cut(s)	806
SmiMI	CAYNNNNRTG	1 cut(s)	893
SmlI	CTYRAG	3 cut(s)	91, 646, 806
SmoI	CTYRAG	3 cut(s)	91, 646, 806
SpeI	ACTAGT	1 cut(s)	1069
Sse9I	AATT	5 cut(s)	134, 391, 705, 1200, 1314
SseBI	AGGCCT	1 cut(s)	788
SsiI	CCGC	4 cut(s)	71, 167, 724, 975
SspI	AATATT	1 cut(s)	130
SspMI	CTAG	4 cut(s)	180, 338, 380, 1070
StuI	AGGCCT	1 cut(s)	788
StyD4I	CCNGG	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	695
TaaI	ACNGT	1 cut(s)	883
TaiI	ACGT	2 cut(s)	893, 1108
TaqI	TCGA	4 cut(s)	585, 765, 807, 1242
TasI	AATT	5 cut(s)	134, 391, 705, 1200, 1314
TatI	WGTACW	1 cut(s)	1165
TfiI	GAWTC	2 cut(s)	449, 691
Tru1I	TTAA	3 cut(s)	138, 653, 962
Tru9I	TTAA	3 cut(s)	138, 653, 962
TscAI	CASTG	1 cut(s)	1134
TspDTI	ATGAA	6 cut(s)	387, 491, 667, 828, 1098, 1241
TspRI	CASTG	1 cut(s)	1134
VpaK11BI	GGWCC	1 cut(s)	972
XapI	RAATTY	1 cut(s)	134
XbaI	TCTAGA	1 cut(s)	379
XceI	RCATGY	1 cut(s)	10
XhoI	CTCGAG	1 cut(s)	806
XmnI	GAANNNNTTC	2 cut(s)	1248, 1342
XspI	CTAG	4 cut(s)	180, 338, 380, 1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.