AT5G54820

F-box protein At3g62230-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
22269859 .. 22271777
1919 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G54820.1

Sequence Viewer

Length: 1419 bp
ATGGATTCAATTCAACAAGACAGATTATCTAGTCTTCCCGACATTCTTCTAATTATGATCATCTCTTTCTTGCCGTTAAAGGAATGTGTAAGGACCAGTGTTCTCTCCAAGAGGTGGAGGTATCTCTGCTTGGAGACCACAAACCTTTCTTTTAAGGAATCTGATTACGTGAATCCTGATATCACCGATGCTGAATATTCGAGAATTGTAGCTTATCGTTCATTCTTTTGTTCTGTGGATAAATGGGTCTCTATAACTCAACATCAAGTCGTCGAAAGCTTCGAGATTTGTTTCTCCCATCTGGTGGGTTTCGAGGATAAGATCGACGCTCTGATCGAATACGCTGTCTCCACACGAGTGAAGAATTTAGTTGTTGATTTGTCAAACCCCTCTTGGAGAAGCAATGGTGATATATCATATCGTCATTTTATGTATACATTGCCTAAAAGCGTTTACAGTCTAACAACCTTGGAGTCACTGAAGATTTACGGGTGCAAGTTTGATCCTTCGAAATTCGTAAACCCTGTATTGCTAAGAAGCCTCTCTATTGGTTGGGTCAGACTCGAAAACCTCCACTCTTTACTATCCAAATCTCCTTCCCTCCAGAGTCTAAGTATCAAAAATTGTTGGGGCGTTGATATCACGTCGATGGCCGGGCAGTTCAGAGAGCTAGTCATTGAGCATTCAGACTTCAGTTACATGCAATGTGCCTTTGAGCTGCCTCGTATACACAGCTTCAAGTACTCTGGGGAGTTGTTCGAGTTCTACTTCGACGTAGTGAATGTGATCATACCAAATGTGTACTTGGATTTTGGAGAAGAGCGAGTATATGATCTACAAAGCCAATCATCAAGAATATCGGGTGAGGTTATTTCCCGTATCATTAACGACCTTAGAGCAGCTGAGACTTTAACTGTCTGCCCTTATATCCTCCAGGTTATCCCAGAATGTGAAAAGCCATCTGATTTGCTTCAACCTATGGAAACACGACACTTGGTGTTAAGAACTAAGATGCATACCAAGGAGTTCAATGGAATAATTCTTCTTCTCAACAACTGCCCTAATTTGGAGACGCTTGGTTTTGATATTCTAACTCCATGTCCTTTCTCGGCAACTTCGTCAGATGAAGGCATCGATCCTAAAACGTATTGGATGCAGAAGAGAACATGTAAGAGTCTAAGGAAGACACTGAAGGTCGTGGTTATTAGGAACTTTTGTGGTTCCTCAAACGAGCTAAATGTATTGAGGTATTTGATTCGATCAGCGAGCGGTGCTGGAGATGCGTTGGAAAGAGTAGAGCTTTACGTGCCGAATGGGATGGAAGAAAGTCAAGCGATGGTGGTATTTGCTAAAGCGGAAATGTTACAGAGAACTTCGAAGCATGTACAAGTTCTTTGTGCACAACTCTTGAAAAAATGA

Protein Analysis

472

Amino Acids

54.08

Weight (kDa)

6.34

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 9 - 43 3.4e-07 F-box domain
LRR_At1g61320_AtMIF1 PF23622 106 - 409 5.2e-08 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 144 - 214 1.5e-06 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 114, 304
AccBSI CCGCTC 1 cut(s) 1269
AccI GTMKAC 2 cut(s) 434, 727
AciI CCGC 2 cut(s) 1269, 1355
AclWI GGATC 2 cut(s) 497, 1130
AcoI YGGCCR 1 cut(s) 651
AcsI RAATTY 2 cut(s) 364, 512
AcuI CTGAAG 3 cut(s) 500, 676, 1211
AdeI CACNNNGTG 1 cut(s) 997
AfaI GTAC 3 cut(s) 743, 803, 1386
AfiI CCNNNNNNNGG 3 cut(s) 114, 304, 1066
AflIII ACRYGT 1 cut(s) 1166
AgsI TTSAA 6 cut(s) 9, 14, 739, 974, 1030, 1411
AjiI CACGTC 1 cut(s) 645
AjnI CCWGG 1 cut(s) 933
AleI CACNNNNGTG 1 cut(s) 356
AluBI AGCT 8 cut(s) 212, 279, 670, 718, 735, 902, 1234, 1300
AluI AGCT 8 cut(s) 212, 279, 670, 718, 735, 902, 1234, 1300
Alw21I GWGCWC 1 cut(s) 1402
Alw26I GTCTC 5 cut(s) 128, 253, 352, 899, 1064
Alw44I GTGCAC 1 cut(s) 1398
AlwI GGATC 2 cut(s) 497, 1130
AoxI GGCC 1 cut(s) 651
ApaLI GTGCAC 1 cut(s) 1398
ApeKI GCWGC 2 cut(s) 718, 899
ApoI RAATTY 2 cut(s) 364, 512
ArsI GACNNNNNNTTYG 2 cut(s) 330, 362
AspS9I GGNCC 1 cut(s) 93
AsuC2I CCSGG 1 cut(s) 655
AsuHPI GGTGA 3 cut(s) 175, 419, 875
AsuII TTCGAA 2 cut(s) 509, 1376
AvaII GGWCC 1 cut(s) 93
BaeGI GKGCMC 1 cut(s) 1402
BauI CACGAG 1 cut(s) 354
BbsI GAAGAC 2 cut(s) 26, 1190
Bbv12I GWGCWC 1 cut(s) 1402
BbvI GCAGC 2 cut(s) 705, 911
BccI CCATC 5 cut(s) 306, 643, 967, 1312, 1330
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 935
BclI TGATCA 2 cut(s) 57, 786
BcnI CCSGG 1 cut(s) 655
BcoDI GTCTC 5 cut(s) 128, 253, 352, 899, 1064
BfaI CTAG 2 cut(s) 30, 671
BisI GCNGC 2 cut(s) 719, 900
BlsI GCNGC 2 cut(s) 720, 901
BmcAI AGTACT 1 cut(s) 743
Bme1390I CCNGG 2 cut(s) 655, 935
Bme18I GGWCC 1 cut(s) 93
BmgBI CACGTC 1 cut(s) 645
BmgT120I GGNCC 1 cut(s) 93
BmiI GGNNCC 1 cut(s) 1222
BmrFI CCNGG 2 cut(s) 655, 935
BmsI GCATC 5 cut(s) 178, 1002, 1140, 1143, 1270
BpiI GAAGAC 2 cut(s) 26, 1190
BpmI CTGGAG 3 cut(s) 587, 917, 1296
Bpu14I TTCGAA 2 cut(s) 509, 1376
BpuMI CCSGG 1 cut(s) 655
Bsa29I ATCGAT 1 cut(s) 1134
BsaAI YACGTR 2 cut(s) 169, 1306
BsaI GGTCTC 2 cut(s) 128, 253
BsaJI CCNNGG 2 cut(s) 468, 1020
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 304, 1066
Bse1I ACTGG 1 cut(s) 96
Bse3DI GCAATG 3 cut(s) 409, 437, 710
BseBI CCWGG 1 cut(s) 935
BseCI ATCGAT 1 cut(s) 1134
BseDI CCNNGG 2 cut(s) 468, 1020
BseGI GGATG 2 cut(s) 1158, 1323
BseLI CCNNNNNNNGG 3 cut(s) 114, 304, 1066
BseMI GCAATG 3 cut(s) 409, 437, 710
BseMII CTCAG 1 cut(s) 894
BseNI ACTGG 1 cut(s) 96
BseSI GKGCMC 1 cut(s) 1402
BseXI GCAGC 2 cut(s) 705, 911
BshFI GGCC 1 cut(s) 653
BshVI ATCGAT 1 cut(s) 1134
BsiHKAI GWGCWC 1 cut(s) 1402
BsiSI CCGG 1 cut(s) 654
BslI CCNNNNNNNGG 3 cut(s) 114, 304, 1066
BsmAI GTCTC 5 cut(s) 128, 253, 352, 899, 1064
BsmBI CGTCTC 1 cut(s) 1064
BsmI GAATGC 1 cut(s) 682
BsnI GGCC 1 cut(s) 653
Bso31I GGTCTC 2 cut(s) 128, 253
Bsp119I TTCGAA 2 cut(s) 509, 1376
Bsp1286I GDGCHC 1 cut(s) 1402
Bsp1407I TGTACA 1 cut(s) 1384
Bsp143I GATC 8 cut(s) 57, 321, 333, 502, 786, 832, 1135, 1259
BspACI CCGC 2 cut(s) 1269, 1355
BspANI GGCC 1 cut(s) 653
BspCNI CTCAG 1 cut(s) 895
BspDI ATCGAT 1 cut(s) 1134
BspLI GGNNCC 1 cut(s) 1222
BspPI GGATC 2 cut(s) 497, 1130
BspQI GCTCTTC 1 cut(s) 813
BspT104I TTCGAA 2 cut(s) 509, 1376
BspTNI GGTCTC 2 cut(s) 128, 253
BsrBI CCGCTC 1 cut(s) 1269
BsrDI GCAATG 3 cut(s) 409, 437, 710
BsrGI TGTACA 1 cut(s) 1384
BsrI ACTGG 1 cut(s) 96
BssECI CCNNGG 2 cut(s) 468, 1020
BssMI GATC 8 cut(s) 57, 321, 333, 502, 786, 832, 1135, 1259
BssNAI GTATAC 2 cut(s) 435, 728
BssSI CACGAG 1 cut(s) 354
BssT1I CCWWGG 2 cut(s) 468, 1020
Bst1107I GTATAC 2 cut(s) 435, 728
Bst2BI CACGAG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 935
Bst4CI ACNGT 2 cut(s) 458, 916
Bst6I CTCTTC 2 cut(s) 813, 1154
BstAUI TGTACA 1 cut(s) 1384
BstBAI YACGTR 2 cut(s) 169, 1306
BstBI TTCGAA 2 cut(s) 509, 1376
BstC8I GCNNGC 1 cut(s) 1267
BstDEI CTNAG 6 cut(s) 533, 611, 893, 903, 1008, 1178
BstF5I GGATG 2 cut(s) 1158, 1323
BstKTI GATC 8 cut(s) 60, 324, 336, 505, 789, 835, 1138, 1262
BstMAI GTCTC 5 cut(s) 128, 253, 352, 899, 1064
BstMBI GATC 8 cut(s) 57, 321, 333, 502, 786, 832, 1135, 1259
BstMWI GCNNNNNNNGC 3 cut(s) 1271, 1280, 1306
BstNI CCWGG 1 cut(s) 935
BstNSI RCATGY 3 cut(s) 703, 1170, 1385
BstSCI CCNGG 2 cut(s) 653, 933
BstSLI GKGCMC 1 cut(s) 1402
BstV1I GCAGC 2 cut(s) 705, 911
BstV2I GAAGAC 2 cut(s) 26, 1190
BstZ17I GTATAC 2 cut(s) 435, 728
Bsu15I ATCGAT 1 cut(s) 1134
BsuRI GGCC 1 cut(s) 653
BsuTUI ATCGAT 1 cut(s) 1134
BtgZI GCGATG 1 cut(s) 1349
BtrI CACGTC 1 cut(s) 645
BtsCI GGATG 2 cut(s) 1158, 1323
BtsIMutI CAGTG 3 cut(s) 103, 476, 1187
Cac8I GCNNGC 1 cut(s) 1267
Cfr13I GGNCC 1 cut(s) 93
ClaI ATCGAT 1 cut(s) 1134
CseI GACGC 2 cut(s) 335, 1081
Csp6I GTAC 3 cut(s) 742, 802, 1385
CviAII CATG 4 cut(s) 700, 1098, 1167, 1382
CviQI GTAC 3 cut(s) 742, 802, 1385
DdeI CTNAG 6 cut(s) 533, 611, 893, 903, 1008, 1178
DpnI GATC 8 cut(s) 59, 323, 335, 504, 788, 834, 1137, 1261
DpnII GATC 8 cut(s) 57, 321, 333, 502, 786, 832, 1135, 1259
DraIII CACNNNGTG 1 cut(s) 997
EaeI YGGCCR 1 cut(s) 651
Eam1104I CTCTTC 2 cut(s) 813, 1154
EarI CTCTTC 2 cut(s) 813, 1154
Eco130I CCWWGG 2 cut(s) 468, 1020
Eco31I GGTCTC 2 cut(s) 128, 253
Eco32I GATATC 2 cut(s) 181, 640
Eco47I GGWCC 1 cut(s) 93
Eco57I CTGAAG 3 cut(s) 500, 676, 1211
EcoRII CCWGG 1 cut(s) 933
EcoRV GATATC 2 cut(s) 181, 640
EcoT14I CCWWGG 2 cut(s) 468, 1020
EcoT22I ATGCAT 1 cut(s) 1017
ErhI CCWWGG 2 cut(s) 468, 1020
Esp3I CGTCTC 1 cut(s) 1064
FaeI CATG 4 cut(s) 703, 1101, 1170, 1385
FatI CATG 4 cut(s) 699, 1097, 1166, 1381
FbaI TGATCA 2 cut(s) 57, 786
FblI GTMKAC 2 cut(s) 434, 727
Fnu4HI GCNGC 2 cut(s) 719, 900
FokI GGATG 2 cut(s) 1165, 1330
Fsp4HI GCNGC 2 cut(s) 719, 900
FspBI CTAG 2 cut(s) 30, 671
GluI GCNGC 2 cut(s) 719, 900
GsuI CTGGAG 3 cut(s) 587, 917, 1296
HaeIII GGCC 1 cut(s) 653
HapII CCGG 1 cut(s) 654
HgaI GACGC 2 cut(s) 335, 1081
Hin1II CATG 4 cut(s) 703, 1101, 1170, 1385
HindIII AAGCTT 1 cut(s) 277
HinfI GANTC 8 cut(s) 5, 158, 172, 473, 561, 607, 1174, 1255
HpaII CCGG 1 cut(s) 654
HphI GGTGA 3 cut(s) 175, 419, 875
Hpy166II GTNNAC 6 cut(s) 435, 454, 520, 728, 802, 1400
Hpy188I TCNGA 7 cut(s) 163, 333, 560, 665, 688, 964, 1123
Hpy188III TCNNGA 7 cut(s) 38, 176, 201, 283, 604, 852, 1408
Hpy8I GTNNAC 6 cut(s) 435, 454, 520, 728, 802, 1400
Hpy99I CGWCG 4 cut(s) 275, 329, 649, 776
HpyAV CCTTC 4 cut(s) 516, 606, 1121, 1186
HpyCH4III ACNGT 2 cut(s) 458, 916
HpyCH4IV ACGT 5 cut(s) 168, 644, 774, 1145, 1305
HpyCH4V TGCA 5 cut(s) 495, 703, 1015, 1156, 1400
HpyF10VI GCNNNNNNNGC 3 cut(s) 1271, 1280, 1306
HpyF3I CTNAG 6 cut(s) 533, 611, 893, 903, 1008, 1178
HpySE526I ACGT 5 cut(s) 168, 644, 774, 1145, 1305
Hsp92II CATG 4 cut(s) 703, 1101, 1170, 1385
Ksp22I TGATCA 2 cut(s) 57, 786
Kzo9I GATC 8 cut(s) 57, 321, 333, 502, 786, 832, 1135, 1259
LguI GCTCTTC 1 cut(s) 813
Lsp1109I GCAGC 2 cut(s) 705, 911
LweI GCATC 5 cut(s) 178, 1002, 1140, 1143, 1270
MaeI CTAG 2 cut(s) 30, 671
MaeII ACGT 5 cut(s) 168, 644, 774, 1145, 1305
MaeIII GTNAC 3 cut(s) 474, 695, 1362
MalI GATC 8 cut(s) 59, 323, 335, 504, 788, 834, 1137, 1261
MbiI CCGCTC 1 cut(s) 1269
MboI GATC 8 cut(s) 57, 321, 333, 502, 786, 832, 1135, 1259
MhlI GDGCHC 1 cut(s) 1402
MluCI AATT 8 cut(s) 9, 51, 204, 364, 512, 622, 1038, 1063
MlyI GAGTC 4 cut(s) 482, 555, 616, 1183
MmeI TCCRAC 1 cut(s) 1266
Mph1103I ATGCAT 1 cut(s) 1017
MseI TTAA 5 cut(s) 77, 153, 885, 911, 1001
MslI CAYNNNNRTG 2 cut(s) 356, 647
MspA1I CMGCKG 1 cut(s) 902
MspI CCGG 1 cut(s) 654
MspR9I CCNGG 2 cut(s) 655, 935
Mva1269I GAATGC 1 cut(s) 682
MvaI CCWGG 1 cut(s) 935
MwoI GCNNNNNNNGC 3 cut(s) 1271, 1280, 1306
NciI CCSGG 1 cut(s) 655
NdeII GATC 8 cut(s) 57, 321, 333, 502, 786, 832, 1135, 1259
NlaIII CATG 4 cut(s) 703, 1101, 1170, 1385
NlaIV GGNNCC 1 cut(s) 1222
NmeAIII GCCGAG 1 cut(s) 1088
NmuCI GTSAC 1 cut(s) 474
NsiI ATGCAT 1 cut(s) 1017
NspI RCATGY 3 cut(s) 703, 1170, 1385
NspV TTCGAA 2 cut(s) 509, 1376
OliI CACNNNNGTG 1 cut(s) 356
PciI ACATGT 1 cut(s) 1166
PciSI GCTCTTC 1 cut(s) 813
PcsI WCGNNNNNNNCGW 3 cut(s) 279, 333, 1115
PctI GAATGC 1 cut(s) 682
PfeI GAWTC 4 cut(s) 5, 158, 172, 1255
PflMI CCANNNNNTGG 2 cut(s) 114, 304
PkrI GCNGC 2 cut(s) 720, 901
PleI GAGTC 4 cut(s) 481, 555, 615, 1182
PpsI GAGTC 4 cut(s) 481, 555, 615, 1182
Ppu21I YACGTR 2 cut(s) 169, 1306
PscI ACATGT 1 cut(s) 1166
Psp6I CCWGG 1 cut(s) 933
PspGI CCWGG 1 cut(s) 933
PspN4I GGNNCC 1 cut(s) 1222
PspPI GGNCC 1 cut(s) 93
PvuII CAGCTG 1 cut(s) 902
RsaI GTAC 3 cut(s) 743, 803, 1386
RsaNI GTAC 3 cut(s) 742, 802, 1385
RseI CAYNNNNRTG 2 cut(s) 356, 647
SapI GCTCTTC 1 cut(s) 813
SaqAI TTAA 5 cut(s) 77, 153, 885, 911, 1001
SatI GCNGC 2 cut(s) 719, 900
Sau3AI GATC 8 cut(s) 57, 321, 333, 502, 786, 832, 1135, 1259
Sau96I GGNCC 1 cut(s) 93
ScaI AGTACT 1 cut(s) 743
SchI GAGTC 4 cut(s) 482, 555, 616, 1183
ScrFI CCNGG 2 cut(s) 655, 935
SduI GDGCHC 1 cut(s) 1402
SfaNI GCATC 5 cut(s) 178, 1002, 1140, 1143, 1270
SfuI TTCGAA 2 cut(s) 509, 1376
SinI GGWCC 1 cut(s) 93
SmiMI CAYNNNNRTG 2 cut(s) 356, 647
Sse9I AATT 8 cut(s) 9, 51, 204, 364, 512, 622, 1038, 1063
SsiI CCGC 2 cut(s) 1269, 1355
SspI AATATT 1 cut(s) 197
SspMI CTAG 2 cut(s) 30, 671
StyD4I CCNGG 2 cut(s) 653, 933
StyI CCWWGG 2 cut(s) 468, 1020
TaaI ACNGT 2 cut(s) 458, 916
TaiI ACGT 5 cut(s) 171, 647, 777, 1148, 1308
TasI AATT 8 cut(s) 9, 51, 204, 364, 512, 622, 1038, 1063
TatI WGTACW 3 cut(s) 741, 801, 1384
TfiI GAWTC 4 cut(s) 5, 158, 172, 1255
Tru1I TTAA 5 cut(s) 77, 153, 885, 911, 1001
Tru9I TTAA 5 cut(s) 77, 153, 885, 911, 1001
TscAI CASTG 3 cut(s) 103, 483, 1194
TseFI GTSAC 1 cut(s) 474
TseI GCWGC 2 cut(s) 718, 899
Tsp45I GTSAC 1 cut(s) 474
TspDTI ATGAA 2 cut(s) 210, 1140
TspRI CASTG 3 cut(s) 103, 483, 1194
Van91I CCANNNNNTGG 2 cut(s) 114, 304
VneI GTGCAC 1 cut(s) 1398
VpaK11BI GGWCC 1 cut(s) 93
XapI RAATTY 2 cut(s) 364, 512
XceI RCATGY 3 cut(s) 703, 1170, 1385
XmiI GTMKAC 2 cut(s) 434, 727
XspI CTAG 2 cut(s) 30, 671
ZrmI AGTACT 1 cut(s) 743
Zsp2I ATGCAT 1 cut(s) 1017
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.