FvH4_7g19741

f-box protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
16217574 .. 16219332
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19741.t1

Sequence Viewer

Length: 1380 bp
ATGGACCCAGATACCCCTCGCCAAGTTCTTCTGATCATCATCATGTCGTACCTTGCTTTCCGAGATGCGGCGAGAACTTCTGTTCTTTCAAGATATTGGCAGAACATGTGGCGTGGAACCAGAAATATAGAATTCAACGAGCGTTTCTTCTCCTACATTGGTGATGACGAAGATGATAGGCGAGGAGCATTCGTCACCTTTGTTCAGAACTGGATTGCTCACTATGAACCTTCGAGTTTGGACAAGTTAAGTATCCTAGTACATCGCCCGGTAGACTTTCTTTTGCTAATGGAAGAGAGTATCGAGTTTGCTATTCGGCATGGAGTTAAGGTTCTAGGGCTTGATTTCTCTGATCCAGCATGGGGTGATGAAGTTTTAAAACTTGGCAATAATCCGGAGCCTGCATTTGTTCTGCCTCCATTTGTCTATGCACATGAGGTTCTTGAATCCCTATCTCTCTTTTCTTGCAACTTCAATCCGGCCGCGATGATCAACTTTAACCTCTTGAAGCAACTGACATTGGGTTGGATTGAACTGCCTCTACCTTCACTCTCCATGTTACTACAAAATTTTCCATTGCTTGAAAGCCTGAGTTTAAAGAACTGTTGGAACACCGGTGGCCTTCAAATTGTTGGACAAGACTTGAGGCTGAGAAGCTTAGATGTTGACAAGTTCGTCATGTACGAGAATCCTTGGATTGAAATTGTTGCTCCAAATCTGAAGCACTTGAAGTATTCCGGGACTATGGTGGTATTCGACATCAGCGCAGGAGAGTTGGAAGATGCGTGTTTTGAGTTTGGACTAGAGATCGAAGGCGATGCAGCAATGGGGGATCGCCTGTATCAACTCCTCCACCAACTTCCCGCTAAGATACTTACAGTGTGTACTTACATGCTTCAGGTACTTCCGCTCGAACTGGGATCTGATGGTGTGGCGCCTATGCTTGGTGTGGGGAAGTTGACATTAAGGACTGCAATGCTCACTTGTGAACAAAGAGGCCTGCAATATCTCCTTTGCAGTTGTCCTTTCTTGCAGGCTCTGATCATTCAGATAGTCCCCGAGAGAATAGTGGATCTTGATGGAGGGGAACCGGATGAAGATGGTGATATATGGACTAGACCAAATGCACCAGATTTTTATTGTGTAAAGGAAACATTGAAAGCGGTTCAGGTGCGAGGTTATAGAGGCACAAGACATGAAGTTGGCTTTGTGAAGTATCTCATCTGCCGTGCCCGTGTGATCCAAAAACTGCATATTCAAATCGGAAACGAGCTTCAAAATCAGAGAAGCATGGCCGAGAATCGTGAACTTGTAGCTCAAACATTTCGAGGACTGAGAAAAGCATCAAGTAATCTCCGCTTAAGTATATTTGCTAGATAA

Protein Analysis

460

Amino Acids

52.25

Weight (kDa)

5.28

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 126 - 247 1.9e-08 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1 PF23622 146 - 259 2.8e-10 At1g61320/AtMIF1, LRR domain
FBD PF08387 381 - 419 4.4e-08 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 674
AccB1I GGYRCC 1 cut(s) 934
AccBSI CCGCTC 1 cut(s) 910
AccI GTMKAC 1 cut(s) 273
AccII CGCG 1 cut(s) 485
AccIII TCCGGA 1 cut(s) 394
AciI CCGC 6 cut(s) 68, 483, 864, 908, 1163, 1357
AclWI GGATC 5 cut(s) 347, 840, 928, 1080, 1234
AcoI YGGCCR 2 cut(s) 480, 1293
AcsI RAATTY 2 cut(s) 131, 568
AcuI CTGAAG 2 cut(s) 740, 881
AcyI GRCGYC 1 cut(s) 935
AfaI GTAC 5 cut(s) 50, 261, 683, 886, 903
AfiI CCNNNNNNNGG 3 cut(s) 67, 362, 944
AflII CTTAAG 1 cut(s) 1360
AflIII ACRYGT 1 cut(s) 105
AgeI ACCGGT 1 cut(s) 614
AloI GAACNNNNNNTCC 2 cut(s) 315, 347
AluBI AGCT 3 cut(s) 657, 1273, 1316
AluI AGCT 3 cut(s) 657, 1273, 1316
AlwI GGATC 5 cut(s) 347, 840, 928, 1080, 1234
AlwNI CAGNNNCTG 1 cut(s) 1039
Ama87I CYCGRG 1 cut(s) 1058
Aor13HI TCCGGA 1 cut(s) 394
AoxI GGCC 4 cut(s) 480, 619, 997, 1293
ApeKI GCWGC 1 cut(s) 821
ApoI RAATTY 2 cut(s) 131, 568
AsiGI ACCGGT 1 cut(s) 614
AspLEI GCGC 2 cut(s) 767, 937
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 2 cut(s) 269, 739
AsuHPI GGTGA 4 cut(s) 173, 187, 377, 1115
AvaI CYCGRG 1 cut(s) 1058
AvaII GGWCC 1 cut(s) 4
BaeGI GKGCMC 1 cut(s) 1234
BanI GGYRCC 1 cut(s) 934
BbvI GCAGC 1 cut(s) 833
BccI CCATC 3 cut(s) 920, 1073, 1094
BceAI ACGGC 1 cut(s) 1212
BcgI CGANNNNNNTGC 2 cut(s) 800, 834
BciVI GTATCC 1 cut(s) 263
BclI TGATCA 3 cut(s) 33, 489, 1041
BcnI CCSGG 2 cut(s) 269, 739
BfaI CTAG 5 cut(s) 257, 335, 803, 1116, 1374
BfoI RGCGCY 1 cut(s) 938
BfrI CTTAAG 1 cut(s) 1360
BfuI GTATCC 1 cut(s) 263
BisI GCNGC 3 cut(s) 69, 483, 822
BlsI GCNGC 3 cut(s) 70, 484, 823
Bme1390I CCNGG 2 cut(s) 269, 739
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 1058
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 5 cut(s) 6, 118, 399, 936, 1089
BmrFI CCNGG 2 cut(s) 269, 739
BmrI ACTGGG 1 cut(s) 926
BmsI GCATC 4 cut(s) 55, 772, 808, 1352
BmuI ACTGGG 1 cut(s) 926
BpuEI CTTGAG 1 cut(s) 664
BpuMI CCSGG 2 cut(s) 269, 739
BsaBI GATNNNNATC 1 cut(s) 38
BsaHI GRCGYC 1 cut(s) 935
BsaJI CCNNGG 1 cut(s) 692
BsaWI WCCGGW 3 cut(s) 394, 614, 1090
BsaXI ACNNNNNCTCC 4 cut(s) 177, 207, 315, 345
Bsc4I CCNNNNNNNGG 3 cut(s) 67, 362, 944
Bse118I RCCGGY 1 cut(s) 614
Bse1I ACTGG 2 cut(s) 215, 921
Bse3DI GCAATG 3 cut(s) 575, 831, 981
Bse8I GATNNNNATC 1 cut(s) 38
BseAI TCCGGA 1 cut(s) 394
BseDI CCNNGG 1 cut(s) 692
BseGI GGATG 1 cut(s) 1099
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 3 cut(s) 67, 362, 944
BseMI GCAATG 3 cut(s) 575, 831, 981
BseMII CTCAG 3 cut(s) 581, 641, 1325
BseNI ACTGG 2 cut(s) 215, 921
BseRI GAGGAG 2 cut(s) 198, 839
BseSI GKGCMC 1 cut(s) 1234
BseX3I CGGCCG 1 cut(s) 480
BseXI GCAGC 1 cut(s) 833
Bsh1236I CGCG 1 cut(s) 485
Bsh1285I CGRYCG 1 cut(s) 483
BshFI GGCC 4 cut(s) 482, 621, 999, 1295
BshNI GGYRCC 1 cut(s) 934
BshTI ACCGGT 1 cut(s) 614
BsiEI CGRYCG 1 cut(s) 483
BsiHKCI CYCGRG 1 cut(s) 1058
BsiSI CCGG 6 cut(s) 269, 395, 479, 615, 738, 1091
BslFI GGGAC 2 cut(s) 754, 1040
BslI CCNNNNNNNGG 3 cut(s) 67, 362, 944
BsmFI GGGAC 2 cut(s) 754, 1040
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 4 cut(s) 482, 621, 999, 1295
BsoBI CYCGRG 1 cut(s) 1058
Bsp1286I GDGCHC 1 cut(s) 1234
Bsp13I TCCGGA 1 cut(s) 394
Bsp143I GATC 9 cut(s) 33, 352, 489, 807, 832, 920, 1041, 1072, 1239
BspACI CCGC 6 cut(s) 68, 483, 864, 908, 1163, 1357
BspANI GGCC 4 cut(s) 482, 621, 999, 1295
BspCNI CTCAG 3 cut(s) 582, 642, 1326
BspEI TCCGGA 1 cut(s) 394
BspFNI CGCG 1 cut(s) 485
BspLI GGNNCC 5 cut(s) 6, 118, 399, 936, 1089
BspPI GGATC 5 cut(s) 347, 840, 928, 1080, 1234
BspT107I GGYRCC 1 cut(s) 934
BspTI CTTAAG 1 cut(s) 1360
BsrBI CCGCTC 1 cut(s) 910
BsrDI GCAATG 3 cut(s) 575, 831, 981
BsrFI RCCGGY 1 cut(s) 614
BsrI ACTGG 2 cut(s) 215, 921
BssAI RCCGGY 1 cut(s) 614
BssECI CCNNGG 1 cut(s) 692
BssMI GATC 9 cut(s) 33, 352, 489, 807, 832, 920, 1041, 1072, 1239
BssNI GRCGYC 1 cut(s) 935
BssT1I CCWWGG 1 cut(s) 692
Bst4CI ACNGT 2 cut(s) 605, 880
Bst6I CTCTTC 1 cut(s) 288
BstACI GRCGYC 1 cut(s) 935
BstAFI CTTAAG 1 cut(s) 1360
BstC8I GCNNGC 3 cut(s) 402, 1001, 1035
BstDEI CTNAG 5 cut(s) 590, 650, 658, 867, 1334
BstF5I GGATG 1 cut(s) 1099
BstFNI CGCG 1 cut(s) 485
BstH2I RGCGCY 1 cut(s) 938
BstHHI GCGC 2 cut(s) 767, 937
BstKTI GATC 9 cut(s) 36, 355, 492, 810, 835, 923, 1044, 1075, 1242
BstMBI GATC 9 cut(s) 33, 352, 489, 807, 832, 920, 1041, 1072, 1239
BstMCI CGRYCG 1 cut(s) 483
BstNSI RCATGY 2 cut(s) 109, 895
BstSCI CCNGG 2 cut(s) 267, 737
BstSLI GKGCMC 1 cut(s) 1234
BstUI CGCG 1 cut(s) 485
BstV1I GCAGC 1 cut(s) 833
BstX2I RGATCY 2 cut(s) 920, 1072
BstYI RGATCY 2 cut(s) 920, 1072
BstZI CGGCCG 1 cut(s) 480
BsuI GTATCC 1 cut(s) 263
BsuRI GGCC 4 cut(s) 482, 621, 999, 1295
BtgZI GCGATG 3 cut(s) 248, 500, 831
BtsCI GGATG 1 cut(s) 1099
BtsIMutI CAGTG 1 cut(s) 885
Cac8I GCNNGC 3 cut(s) 402, 1001, 1035
CaiI CAGNNNCTG 1 cut(s) 1039
CfoI GCGC 2 cut(s) 767, 937
Cfr10I RCCGGY 1 cut(s) 614
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 5 cut(s) 49, 260, 682, 885, 902
CspAI ACCGGT 1 cut(s) 614
CviQI GTAC 5 cut(s) 49, 260, 682, 885, 902
DdeI CTNAG 5 cut(s) 590, 650, 658, 867, 1334
DinI GGCGCC 1 cut(s) 936
DpnI GATC 9 cut(s) 35, 354, 491, 809, 834, 922, 1043, 1074, 1241
DpnII GATC 9 cut(s) 33, 352, 489, 807, 832, 920, 1041, 1072, 1239
DraI TTTAAA 2 cut(s) 378, 597
DrdI GACNNNNNNGTC 1 cut(s) 674
DseDI GACNNNNNNGTC 1 cut(s) 674
EaeI YGGCCR 2 cut(s) 480, 1293
EagI CGGCCG 1 cut(s) 480
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
EclXI CGGCCG 1 cut(s) 480
Eco130I CCWWGG 1 cut(s) 692
Eco147I AGGCCT 1 cut(s) 999
Eco47I GGWCC 1 cut(s) 4
Eco52I CGGCCG 1 cut(s) 480
Eco57I CTGAAG 2 cut(s) 740, 881
Eco88I CYCGRG 1 cut(s) 1058
EcoRI GAATTC 1 cut(s) 131
EcoT14I CCWWGG 1 cut(s) 692
EgeI GGCGCC 1 cut(s) 936
EheI GGCGCC 1 cut(s) 936
ErhI CCWWGG 1 cut(s) 692
FaqI GGGAC 2 cut(s) 754, 1040
FauI CCCGC 1 cut(s) 871
FbaI TGATCA 3 cut(s) 33, 489, 1041
FblI GTMKAC 1 cut(s) 273
Fnu4HI GCNGC 3 cut(s) 69, 483, 822
FokI GGATG 1 cut(s) 1106
Fsp4HI GCNGC 3 cut(s) 69, 483, 822
FspBI CTAG 5 cut(s) 257, 335, 803, 1116, 1374
GlaI GCGC 2 cut(s) 766, 936
GluI GCNGC 3 cut(s) 69, 483, 822
HaeII RGCGCY 1 cut(s) 938
HaeIII GGCC 4 cut(s) 482, 621, 999, 1295
HapII CCGG 6 cut(s) 269, 395, 479, 615, 738, 1091
HhaI GCGC 2 cut(s) 767, 937
Hin1I GRCGYC 1 cut(s) 935
Hin6I GCGC 2 cut(s) 765, 935
HinP1I GCGC 2 cut(s) 765, 935
HincII GTYRAC 2 cut(s) 667, 960
HindII GTYRAC 2 cut(s) 667, 960
HindIII AAGCTT 1 cut(s) 655
HinfI GANTC 3 cut(s) 446, 688, 1300
HpaII CCGG 6 cut(s) 269, 395, 479, 615, 738, 1091
HphI GGTGA 4 cut(s) 173, 187, 377, 1115
Hpy166II GTNNAC 6 cut(s) 274, 667, 885, 960, 989, 1307
Hpy188III TCNNGA 6 cut(s) 90, 395, 443, 505, 1076, 1304
Hpy8I GTNNAC 6 cut(s) 274, 667, 885, 960, 989, 1307
HpyAV CCTTC 4 cut(s) 240, 555, 632, 806
HpyCH4III ACNGT 2 cut(s) 605, 880
HpyF3I CTNAG 5 cut(s) 590, 650, 658, 867, 1334
Hsp92I GRCGYC 1 cut(s) 935
HspAI GCGC 2 cut(s) 765, 935
KasI GGCGCC 1 cut(s) 934
Kpn2I TCCGGA 1 cut(s) 394
Ksp22I TGATCA 3 cut(s) 33, 489, 1041
Kzo9I GATC 9 cut(s) 33, 352, 489, 807, 832, 920, 1041, 1072, 1239
LmnI GCTCC 3 cut(s) 185, 397, 715
Lsp1109I GCAGC 1 cut(s) 833
LweI GCATC 4 cut(s) 55, 772, 808, 1352
MaeI CTAG 5 cut(s) 257, 335, 803, 1116, 1374
MaeIII GTNAC 2 cut(s) 193, 558
MalI GATC 9 cut(s) 35, 354, 491, 809, 834, 922, 1043, 1074, 1241
MbiI CCGCTC 1 cut(s) 910
MboI GATC 9 cut(s) 33, 352, 489, 807, 832, 920, 1041, 1072, 1239
MboII GAAGA 6 cut(s) 20, 139, 182, 305, 791, 1109
MflI RGATCY 2 cut(s) 920, 1072
MhlI GDGCHC 1 cut(s) 1234
MluCI AATT 4 cut(s) 131, 568, 627, 702
Mly113I GGCGCC 1 cut(s) 935
MmeI TCCRAC 4 cut(s) 506, 587, 613, 756
MroI TCCGGA 1 cut(s) 394
MseI TTAA 7 cut(s) 248, 327, 377, 498, 596, 965, 1361
MslI CAYNNNNRTG 1 cut(s) 41
MspCI CTTAAG 1 cut(s) 1360
MspI CCGG 6 cut(s) 269, 395, 479, 615, 738, 1091
MspR9I CCNGG 2 cut(s) 269, 739
Mva1269I GAATGC 1 cut(s) 188
MvnI CGCG 1 cut(s) 485
NarI GGCGCC 1 cut(s) 935
NciI CCSGG 2 cut(s) 269, 739
NdeII GATC 9 cut(s) 33, 352, 489, 807, 832, 920, 1041, 1072, 1239
NlaIV GGNNCC 5 cut(s) 6, 118, 399, 936, 1089
NmeAIII GCCGAG 1 cut(s) 1321
NmuCI GTSAC 1 cut(s) 193
NspI RCATGY 2 cut(s) 109, 895
PceI AGGCCT 1 cut(s) 999
PciI ACATGT 1 cut(s) 105
PcsI WCGNNNNNNNCGW 1 cut(s) 681
PctI GAATGC 1 cut(s) 188
PfeI GAWTC 3 cut(s) 446, 688, 1300
PfoI TCCNGGA 1 cut(s) 737
PinAI ACCGGT 1 cut(s) 614
PkrI GCNGC 3 cut(s) 70, 484, 823
PluTI GGCGCC 1 cut(s) 938
PscI ACATGT 1 cut(s) 105
PspN4I GGNNCC 5 cut(s) 6, 118, 399, 936, 1089
PspPI GGNCC 1 cut(s) 4
PsrI GAACNNNNNNTAC 2 cut(s) 525, 557
PstNI CAGNNNCTG 1 cut(s) 1039
PsuI RGATCY 2 cut(s) 920, 1072
RsaI GTAC 5 cut(s) 50, 261, 683, 886, 903
RsaNI GTAC 5 cut(s) 49, 260, 682, 885, 902
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 7 cut(s) 248, 327, 377, 498, 596, 965, 1361
SatI GCNGC 3 cut(s) 69, 483, 822
Sau3AI GATC 9 cut(s) 33, 352, 489, 807, 832, 920, 1041, 1072, 1239
Sau96I GGNCC 1 cut(s) 4
ScrFI CCNGG 2 cut(s) 269, 739
SduI GDGCHC 1 cut(s) 1234
SfaNI GCATC 4 cut(s) 55, 772, 808, 1352
SfoI GGCGCC 1 cut(s) 936
SgrAI CRCCGGYG 1 cut(s) 614
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 2 cut(s) 643, 1360
SmoI CTYRAG 2 cut(s) 643, 1360
Sse9I AATT 4 cut(s) 131, 568, 627, 702
SseBI AGGCCT 1 cut(s) 999
SsiI CCGC 6 cut(s) 68, 483, 864, 908, 1163, 1357
SspDI GGCGCC 1 cut(s) 934
SspMI CTAG 5 cut(s) 257, 335, 803, 1116, 1374
StuI AGGCCT 1 cut(s) 999
StyD4I CCNGG 2 cut(s) 267, 737
StyI CCWWGG 1 cut(s) 692
TaaI ACNGT 2 cut(s) 605, 880
TaqI TCGA 6 cut(s) 233, 303, 756, 810, 912, 1327
TasI AATT 4 cut(s) 131, 568, 627, 702
TatI WGTACW 2 cut(s) 259, 884
TauI GCSGC 2 cut(s) 71, 485
TfiI GAWTC 3 cut(s) 446, 688, 1300
Tru1I TTAA 7 cut(s) 248, 327, 377, 498, 596, 965, 1361
Tru9I TTAA 7 cut(s) 248, 327, 377, 498, 596, 965, 1361
TscAI CASTG 1 cut(s) 885
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 1 cut(s) 821
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 4 cut(s) 240, 384, 1110, 1212
TspRI CASTG 1 cut(s) 885
Vha464I CTTAAG 1 cut(s) 1360
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 2 cut(s) 131, 568
XceI RCATGY 2 cut(s) 109, 895
XmiI GTMKAC 1 cut(s) 273
XspI CTAG 5 cut(s) 257, 335, 803, 1116, 1374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.