AT2G17305

F-box protein At3g62230-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003556
Physical Location & Seq
Forward (+)
7527676 .. 7529210
1535 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17305.1

Sequence Viewer

Length: 816 bp
ATGGTAGAACCTGATAGGGTTTTCTTTGTACGTGTTATGCGTGAGTGGATCTCAAGATTTACTGGTAAAATTATTGAAAATTTTGAGATTCATCTCTCCCAGCCGATGGGTTTCGCAGGAGATATAATGTCTCTCACTGAATTTGCCACCTCCCGACAAGTCAAGAACTTAGTTCTTGATTTCTCAGATCCTATCCAAAGAAACTTAAGTCAAGCCCAACAGATTATAAGAGATGGTCTACTCAGATGCAGATACCCTCAAAAGAACGAATTAGATGTTTCTCATCTCTTTTTCAATCTTTTATATGTTAGAAATTTAACGGTCTGCTCTTTTTTCCTTCAGGTCCTCCAAGATTGTGACGATCCTATGGCTTTGCACGTTTCGATGAAAACTCGACATTTGGTGATGAAAACAAATATGCACGCAAATGACTTCGTGGGAATTAGCATATTTCTCAATAGTTGTCCGGAACTGGAATCACTCACGTTTGATTTGGTTACTAGTAGTCGTTTCGTGAGAGCTCCATCGCCTTTAGTGATAGATCCTGTAAGCCATTGGCTCACTAGCAAATCTTACGAGTGTTTGGAAAAAACGCTTAAGGTTGTGAAGATAACAAAATTTCGTGGAAGCTCGAACGAGTTACATATGCTTCAATACTTGCTTCGTACCGGGTGTGTTATGGAACGAGTTGATCTATACGAGGCAGAGGGATTGAACCATAACCAAAAGAGGTGGGTACTAGCTGGGGTTGAGGAGGTTCAGCAGAATTTCAAGAGAGCTTCGAGGCATTTACGAATTACTCTACACAATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

271

Amino Acids

31.51

Weight (kDa)

8.52

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 192 - 230 2.6e-07 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 227
AccB7I CCANNNNNTGG 1 cut(s) 106
AccI GTMKAC 1 cut(s) 238
AccIII TCCGGA 1 cut(s) 466
AclWI GGATC 4 cut(s) 56, 182, 356, 536
AcsI RAATTY 5 cut(s) 79, 140, 313, 617, 766
AcuI CTGAAG 1 cut(s) 323
AfaI GTAC 3 cut(s) 30, 667, 738
AfiI CCNNNNNNNGG 1 cut(s) 106
AflII CTTAAG 2 cut(s) 205, 596
AflIII ACRYGT 1 cut(s) 31
AgsI TTSAA 5 cut(s) 77, 295, 653, 715, 772
AhlI ACTAGT 1 cut(s) 500
AluBI AGCT 4 cut(s) 521, 630, 743, 779
AluI AGCT 4 cut(s) 521, 630, 743, 779
Alw21I GWGCWC 1 cut(s) 523
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 4 cut(s) 56, 182, 356, 536
Aor13HI TCCGGA 1 cut(s) 466
ApoI RAATTY 5 cut(s) 79, 140, 313, 617, 766
AspS9I GGNCC 1 cut(s) 343
AsuC2I CCSGG 1 cut(s) 670
AsuHPI GGTGA 1 cut(s) 415
AvaII GGWCC 1 cut(s) 343
BanII GRGCYC 1 cut(s) 523
Bbv12I GWGCWC 1 cut(s) 523
BccI CCATC 3 cut(s) 100, 227, 532
BcnI CCSGG 1 cut(s) 670
BcoDI GTCTC 1 cut(s) 135
BcuI ACTAGT 1 cut(s) 500
BfaI CTAG 3 cut(s) 501, 564, 740
BfrI CTTAAG 2 cut(s) 205, 596
Bme1390I CCNGG 1 cut(s) 670
Bme18I GGWCC 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 343
BmrFI CCNGG 1 cut(s) 670
BmsI GCATC 1 cut(s) 236
BplI GAGNNNNNCTC 2 cut(s) 35, 67
BpuEI CTTGAG 1 cut(s) 37
BpuMI CCSGG 1 cut(s) 670
BsaAI YACGTR 1 cut(s) 32
BsaWI WCCGGW 1 cut(s) 466
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse1I ACTGG 2 cut(s) 67, 477
BseAI TCCGGA 1 cut(s) 466
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMII CTCAG 2 cut(s) 198, 256
BseNI ACTGG 2 cut(s) 67, 477
BseRI GAGGAG 1 cut(s) 767
BseYI CCCAGC 2 cut(s) 99, 743
BsiHKAI GWGCWC 1 cut(s) 523
BsiSI CCGG 2 cut(s) 467, 669
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 523
Bsp13I TCCGGA 1 cut(s) 466
Bsp143I GATC 5 cut(s) 48, 187, 361, 541, 691
BspCNI CTCAG 2 cut(s) 197, 255
BspEI TCCGGA 1 cut(s) 466
BspPI GGATC 4 cut(s) 56, 182, 356, 536
BspTI CTTAAG 2 cut(s) 205, 596
BsrI ACTGG 2 cut(s) 67, 477
BssMI GATC 5 cut(s) 48, 187, 361, 541, 691
Bst4CI ACNGT 1 cut(s) 322
BstAFI CTTAAG 2 cut(s) 205, 596
BstBAI YACGTR 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 3 cut(s) 169, 184, 242
BstKTI GATC 5 cut(s) 51, 190, 364, 544, 694
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 5 cut(s) 48, 187, 361, 541, 691
BstSCI CCNGG 1 cut(s) 668
BstX2I RGATCY 3 cut(s) 48, 187, 541
BstYI RGATCY 3 cut(s) 48, 187, 541
BtgZI GCGATG 1 cut(s) 510
BtsIMutI CAGTG 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 423
Cfr13I GGNCC 1 cut(s) 343
Csp6I GTAC 3 cut(s) 29, 666, 737
CspCI CAANNNNNGTGG 2 cut(s) 713, 748
CviJI RGCY 9 cut(s) 103, 215, 371, 521, 552, 559, 630, 743, 779
CviKI_1 RGCY 9 cut(s) 103, 215, 371, 521, 552, 559, 630, 743, 779
CviQI GTAC 3 cut(s) 29, 666, 737
DdeI CTNAG 3 cut(s) 169, 184, 242
DpnI GATC 5 cut(s) 50, 189, 363, 543, 693
DpnII GATC 5 cut(s) 48, 187, 361, 541, 691
Ecl136II GAGCTC 1 cut(s) 521
Eco24I GRGCYC 1 cut(s) 523
Eco47I GGWCC 1 cut(s) 343
Eco53kI GAGCTC 1 cut(s) 521
Eco57I CTGAAG 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 521
EcoO109I RGGNCCY 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 523
FauNDI CATATG 1 cut(s) 645
FblI GTMKAC 1 cut(s) 238
FriOI GRGCYC 1 cut(s) 523
FspBI CTAG 3 cut(s) 501, 564, 740
GsaI CCCAGC 2 cut(s) 103, 747
HapII CCGG 2 cut(s) 467, 669
HinfI GANTC 2 cut(s) 88, 476
HpaII CCGG 2 cut(s) 467, 669
HphI GGTGA 1 cut(s) 415
Hpy166II GTNNAC 1 cut(s) 239
Hpy188I TCNGA 2 cut(s) 187, 245
Hpy188III TCNNGA 7 cut(s) 54, 153, 163, 176, 467, 514, 772
Hpy8I GTNNAC 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 347
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 3 cut(s) 31, 378, 485
HpyCH4V TGCA 3 cut(s) 249, 376, 421
HpyF3I CTNAG 3 cut(s) 169, 184, 242
HpySE526I ACGT 3 cut(s) 31, 378, 485
Kpn2I TCCGGA 1 cut(s) 466
Kzo9I GATC 5 cut(s) 48, 187, 361, 541, 691
LmnI GCTCC 1 cut(s) 526
LweI GCATC 1 cut(s) 236
MaeI CTAG 3 cut(s) 501, 564, 740
MaeII ACGT 3 cut(s) 31, 378, 485
MaeIII GTNAC 3 cut(s) 356, 496, 639
MalI GATC 5 cut(s) 50, 189, 363, 543, 693
MboI GATC 5 cut(s) 48, 187, 361, 541, 691
MboII GAAGA 1 cut(s) 619
MflI RGATCY 3 cut(s) 48, 187, 541
MhlI GDGCHC 1 cut(s) 523
MluCI AATT 9 cut(s) 69, 79, 140, 269, 313, 441, 617, 766, 795
MnlI CCTC 9 cut(s) 160, 267, 356, 694, 700, 723, 745, 748, 777
MroI TCCGGA 1 cut(s) 466
MseI TTAA 3 cut(s) 206, 317, 597
MslI CAYNNNNRTG 1 cut(s) 426
MspCI CTTAAG 2 cut(s) 205, 596
MspI CCGG 2 cut(s) 467, 669
MspR9I CCNGG 1 cut(s) 670
NciI CCSGG 1 cut(s) 670
NdeI CATATG 1 cut(s) 645
NdeII GATC 5 cut(s) 48, 187, 361, 541, 691
NmuCI GTSAC 1 cut(s) 356
PcsI WCGNNNNNNNCGW 1 cut(s) 37
PfeI GAWTC 2 cut(s) 88, 476
PflMI CCANNNNNTGG 1 cut(s) 106
Ppu21I YACGTR 1 cut(s) 32
PpuMI RGGWCCY 1 cut(s) 343
PsiI TTATAA 1 cut(s) 227
Psp124BI GAGCTC 1 cut(s) 523
Psp5II RGGWCCY 1 cut(s) 343
PspFI CCCAGC 2 cut(s) 99, 743
PspPI GGNCC 1 cut(s) 343
PspPPI RGGWCCY 1 cut(s) 343
PsuI RGATCY 3 cut(s) 48, 187, 541
RsaI GTAC 3 cut(s) 30, 667, 738
RsaNI GTAC 3 cut(s) 29, 666, 737
RseI CAYNNNNRTG 1 cut(s) 426
SacI GAGCTC 1 cut(s) 523
SaqAI TTAA 3 cut(s) 206, 317, 597
Sau3AI GATC 5 cut(s) 48, 187, 361, 541, 691
Sau96I GGNCC 1 cut(s) 343
ScrFI CCNGG 1 cut(s) 670
SduI GDGCHC 1 cut(s) 523
SfaNI GCATC 1 cut(s) 236
SinI GGWCC 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 3 cut(s) 52, 205, 596
SmoI CTYRAG 3 cut(s) 52, 205, 596
SpeI ACTAGT 1 cut(s) 500
Sse9I AATT 9 cut(s) 69, 79, 140, 269, 313, 441, 617, 766, 795
SspMI CTAG 3 cut(s) 501, 564, 740
SstI GAGCTC 1 cut(s) 523
StyD4I CCNGG 1 cut(s) 668
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 3 cut(s) 34, 381, 488
TaqI TCGA 4 cut(s) 383, 394, 632, 782
TasI AATT 9 cut(s) 69, 79, 140, 269, 313, 441, 617, 766, 795
TfiI GAWTC 2 cut(s) 88, 476
Tru1I TTAA 3 cut(s) 206, 317, 597
Tru9I TTAA 3 cut(s) 206, 317, 597
TscAI CASTG 1 cut(s) 142
TseFI GTSAC 1 cut(s) 356
Tsp45I GTSAC 1 cut(s) 356
TspDTI ATGAA 3 cut(s) 80, 401, 422
TspRI CASTG 1 cut(s) 142
Van91I CCANNNNNTGG 1 cut(s) 106
Vha464I CTTAAG 2 cut(s) 205, 596
VpaK11BI GGWCC 1 cut(s) 343
XapI RAATTY 5 cut(s) 79, 140, 313, 617, 766
XmiI GTMKAC 1 cut(s) 238
XspI CTAG 3 cut(s) 501, 564, 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.