f-box protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G56400 AT1G56400 AT2G17305 AT3G29830 AT3G29830 AT3G62230 AT5G54820 |
| fragaria_vesca | FvH4_7g19741 |
| malus_domestica | MD03G1208600.v1.1 MD11G1222600.v1.1 MD11G1222800.v1.1 MD11G1223200.v1.1 |
| prunus_persica | Prupe.4G208100_v2.0.a1 Prupe.4G208200_v2.0.a1 Prupe.4G208300_v2.0.a1 |
| pyrus_communis | pycom03g15720 pycom03g15760 pycom11g19660 |
| rosa_chinensis | RchiOBHm_Chr1g0363631 RchiOBHm_Chr7g0214121 |
| rosa_laevigata | RLG00000008357 RLG00000027555 |
| rosa_multiflora | Rmu_sc0000548.1_g000010 Rmu_sc0000675.1_g000034 |
| rosa_roxburghii | Rroxscaffold_4G00293030 |
| rosa_rugosa | Rorug01G0308300 |
| rosa_samantha | Rh1AG089100 Rh1AG317200 Rh1BG280600 Rh1CG296700 Rh1DG311800 Rh4AG168100 Rh4BG165000 |
| rosa_wichuraiana | Rw1G006910 Rw1G028130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 675 |
| AatII | GACGTC | 1 cut(s) | 404 |
| Acc36I | ACCTGC | 1 cut(s) | 672 |
| Acc65I | GGTACC | 1 cut(s) | 712 |
| AccB1I | GGYRCC | 2 cut(s) | 102, 712 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 99 |
| AccI | GTMKAC | 1 cut(s) | 162 |
| AccII | CGCG | 3 cut(s) | 143, 145, 322 |
| AciI | CCGC | 3 cut(s) | 7, 208, 1138 |
| AclWI | GGATC | 7 cut(s) | 224, 389, 1051, 1112, 1125, 1129, 1142 |
| AcoI | YGGCCR | 2 cut(s) | 430, 1249 |
| AcsI | RAATTY | 4 cut(s) | 248, 277, 496, 1077 |
| AcuI | CTGAAG | 1 cut(s) | 893 |
| AcyI | GRCGYC | 2 cut(s) | 103, 401 |
| AdeI | CACNNNGTG | 1 cut(s) | 340 |
| AfaI | GTAC | 2 cut(s) | 714, 737 |
| AfeI | AGCGCT | 1 cut(s) | 1341 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 99, 880 |
| AflII | CTTAAG | 1 cut(s) | 649 |
| AjnI | CCWGG | 2 cut(s) | 336, 1283 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1119, 1151 |
| AluBI | AGCT | 6 cut(s) | 597, 799, 856, 1032, 1100, 1267 |
| AluI | AGCT | 6 cut(s) | 597, 799, 856, 1032, 1100, 1267 |
| Alw26I | GTCTC | 1 cut(s) | 178 |
| AlwI | GGATC | 7 cut(s) | 224, 389, 1051, 1112, 1125, 1129, 1142 |
| Ama87I | CYCGRG | 1 cut(s) | 23 |
| Aor51HI | AGCGCT | 1 cut(s) | 1341 |
| AoxI | GGCC | 3 cut(s) | 430, 1066, 1249 |
| ApeKI | GCWGC | 1 cut(s) | 71 |
| ApoI | RAATTY | 4 cut(s) | 248, 277, 496, 1077 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1156, 1188 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 441 |
| Asp718I | GGTACC | 1 cut(s) | 712 |
| AspLEI | GCGC | 5 cut(s) | 105, 145, 322, 324, 1342 |
| AspS9I | GGNCC | 3 cut(s) | 4, 744, 1067 |
| AsuC2I | CCSGG | 1 cut(s) | 1071 |
| AsuHPI | GGTGA | 3 cut(s) | 31, 298, 1234 |
| AvaI | CYCGRG | 1 cut(s) | 23 |
| AvaII | GGWCC | 2 cut(s) | 4, 744 |
| BalI | TGGCCA | 1 cut(s) | 432 |
| BamHI | GGATCC | 2 cut(s) | 1117, 1134 |
| BanI | GGYRCC | 2 cut(s) | 102, 712 |
| BanII | GRGCYC | 1 cut(s) | 30 |
| BauI | CACGAG | 1 cut(s) | 1156 |
| BbsI | GAAGAC | 2 cut(s) | 184, 862 |
| BbvI | GCAGC | 1 cut(s) | 83 |
| BccI | CCATC | 2 cut(s) | 137, 1149 |
| BceAI | ACGGC | 2 cut(s) | 934, 1236 |
| BciT130I | CCWGG | 2 cut(s) | 338, 1285 |
| BclI | TGATCA | 1 cut(s) | 1347 |
| BcnI | CCSGG | 1 cut(s) | 1071 |
| BcoDI | GTCTC | 1 cut(s) | 178 |
| BfoI | RGCGCY | 2 cut(s) | 106, 1343 |
| BfrI | CTTAAG | 1 cut(s) | 649 |
| BfuAI | ACCTGC | 1 cut(s) | 672 |
| BisI | GCNGC | 2 cut(s) | 72, 209 |
| BlsI | GCNGC | 2 cut(s) | 73, 210 |
| Bme1390I | CCNGG | 3 cut(s) | 338, 1071, 1285 |
| Bme18I | GGWCC | 2 cut(s) | 4, 744 |
| BmeT110I | CYCGRG | 1 cut(s) | 23 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 744, 1067 |
| BmiI | GGNNCC | 8 cut(s) | 104, 714, 745, 746, 948, 1069, 1119, 1136 |
| BmrFI | CCNGG | 3 cut(s) | 338, 1071, 1285 |
| BmrI | ACTGGG | 1 cut(s) | 750 |
| BmsI | GCATC | 2 cut(s) | 312, 1020 |
| BmuI | ACTGGG | 1 cut(s) | 750 |
| BpiI | GAAGAC | 2 cut(s) | 184, 862 |
| BpuEI | CTTGAG | 5 cut(s) | 605, 751, 833, 898, 1073 |
| BpuMI | CCSGG | 1 cut(s) | 1071 |
| BsaAI | YACGTR | 1 cut(s) | 1225 |
| BsaHI | GRCGYC | 2 cut(s) | 103, 401 |
| BsaJI | CCNNGG | 2 cut(s) | 1069, 1284 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 99, 880 |
| Bse1I | ACTGG | 4 cut(s) | 218, 745, 1119, 1145 |
| Bse3DI | GCAATG | 1 cut(s) | 993 |
| BseBI | CCWGG | 2 cut(s) | 338, 1285 |
| BseDI | CCNNGG | 2 cut(s) | 1069, 1284 |
| BseGI | GGATG | 3 cut(s) | 691, 1011, 1141 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 99, 880 |
| BseMI | GCAATG | 1 cut(s) | 993 |
| BseMII | CTCAG | 3 cut(s) | 27, 281, 713 |
| BseNI | ACTGG | 4 cut(s) | 218, 745, 1119, 1145 |
| BsePI | GCGCGC | 1 cut(s) | 320 |
| BseRI | GAGGAG | 1 cut(s) | 23 |
| BseXI | GCAGC | 1 cut(s) | 83 |
| BsgI | GTGCAG | 3 cut(s) | 200, 700, 844 |
| Bsh1236I | CGCG | 3 cut(s) | 143, 145, 322 |
| BshFI | GGCC | 3 cut(s) | 432, 1068, 1251 |
| BshNI | GGYRCC | 2 cut(s) | 102, 712 |
| BsiHKCI | CYCGRG | 1 cut(s) | 23 |
| BsiSI | CCGG | 1 cut(s) | 1071 |
| BslFI | GGGAC | 2 cut(s) | 757, 1219 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 99, 880 |
| BsmAI | GTCTC | 1 cut(s) | 178 |
| BsmFI | GGGAC | 2 cut(s) | 757, 1219 |
| BsnI | GGCC | 3 cut(s) | 432, 1068, 1251 |
| BsoBI | CYCGRG | 1 cut(s) | 23 |
| Bsp1286I | GDGCHC | 1 cut(s) | 30 |
| Bsp143I | GATC | 7 cut(s) | 216, 394, 1056, 1117, 1134, 1188, 1347 |
| BspACI | CCGC | 3 cut(s) | 7, 208, 1138 |
| BspANI | GGCC | 3 cut(s) | 432, 1068, 1251 |
| BspCNI | CTCAG | 3 cut(s) | 26, 280, 714 |
| BspFNI | CGCG | 3 cut(s) | 143, 145, 322 |
| BspHI | TCATGA | 3 cut(s) | 1084, 1123, 1257 |
| BspLI | GGNNCC | 8 cut(s) | 104, 714, 745, 746, 948, 1069, 1119, 1136 |
| BspMI | ACCTGC | 1 cut(s) | 672 |
| BspPI | GGATC | 7 cut(s) | 224, 389, 1051, 1112, 1125, 1129, 1142 |
| BspQI | GCTCTTC | 1 cut(s) | 863 |
| BspT107I | GGYRCC | 2 cut(s) | 102, 712 |
| BspTI | CTTAAG | 1 cut(s) | 649 |
| BsrDI | GCAATG | 1 cut(s) | 993 |
| BsrI | ACTGG | 4 cut(s) | 218, 745, 1119, 1145 |
| BssECI | CCNNGG | 2 cut(s) | 1069, 1284 |
| BssHII | GCGCGC | 1 cut(s) | 320 |
| BssMI | GATC | 7 cut(s) | 216, 394, 1056, 1117, 1134, 1188, 1347 |
| BssNI | GRCGYC | 2 cut(s) | 103, 401 |
| BssSI | CACGAG | 1 cut(s) | 1156 |
| Bst2BI | CACGAG | 1 cut(s) | 1156 |
| Bst2UI | CCWGG | 2 cut(s) | 338, 1285 |
| Bst4CI | ACNGT | 7 cut(s) | 575, 608, 892, 1131, 1273, 1315, 1381 |
| Bst6I | CTCTTC | 1 cut(s) | 863 |
| BstACI | GRCGYC | 2 cut(s) | 103, 401 |
| BstAFI | CTTAAG | 1 cut(s) | 649 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1369 |
| BstBAI | YACGTR | 1 cut(s) | 1225 |
| BstC8I | GCNNGC | 3 cut(s) | 169, 322, 547 |
| BstDEI | CTNAG | 4 cut(s) | 13, 267, 722, 784 |
| BstEII | GGTNACC | 1 cut(s) | 1240 |
| BstF5I | GGATG | 3 cut(s) | 691, 1011, 1141 |
| BstFNI | CGCG | 3 cut(s) | 143, 145, 322 |
| BstH2I | RGCGCY | 2 cut(s) | 106, 1343 |
| BstHHI | GCGC | 5 cut(s) | 105, 145, 322, 324, 1342 |
| BstKTI | GATC | 7 cut(s) | 219, 397, 1059, 1120, 1137, 1191, 1350 |
| BstMAI | GTCTC | 1 cut(s) | 178 |
| BstMBI | GATC | 7 cut(s) | 216, 394, 1056, 1117, 1134, 1188, 1347 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1337, 1369 |
| BstNI | CCWGG | 2 cut(s) | 338, 1285 |
| BstNSI | RCATGY | 1 cut(s) | 549 |
| BstPI | GGTNACC | 1 cut(s) | 1240 |
| BstSCI | CCNGG | 3 cut(s) | 336, 1069, 1283 |
| BstUI | CGCG | 3 cut(s) | 143, 145, 322 |
| BstV1I | GCAGC | 1 cut(s) | 83 |
| BstV2I | GAAGAC | 2 cut(s) | 184, 862 |
| BstX2I | RGATCY | 3 cut(s) | 1056, 1117, 1134 |
| BstYI | RGATCY | 3 cut(s) | 1056, 1117, 1134 |
| BsuRI | GGCC | 3 cut(s) | 432, 1068, 1251 |
| BtsCI | GGATG | 3 cut(s) | 691, 1011, 1141 |
| BtsIMutI | CAGTG | 4 cut(s) | 211, 604, 738, 1112 |
| BveI | ACCTGC | 1 cut(s) | 672 |
| Cac8I | GCNNGC | 3 cut(s) | 169, 322, 547 |
| CciI | TCATGA | 3 cut(s) | 1084, 1123, 1257 |
| CfoI | GCGC | 5 cut(s) | 105, 145, 322, 324, 1342 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 744, 1067 |
| CseI | GACGC | 1 cut(s) | 173 |
| CsiI | ACCWGGT | 1 cut(s) | 336 |
| Csp6I | GTAC | 2 cut(s) | 713, 736 |
| CviAII | CATG | 9 cut(s) | 363, 434, 546, 616, 922, 992, 1085, 1124, 1258 |
| CviQI | GTAC | 2 cut(s) | 713, 736 |
| DdeI | CTNAG | 4 cut(s) | 13, 267, 722, 784 |
| DinI | GGCGCC | 1 cut(s) | 104 |
| DpnI | GATC | 7 cut(s) | 218, 396, 1058, 1119, 1136, 1190, 1349 |
| DpnII | GATC | 7 cut(s) | 216, 394, 1056, 1117, 1134, 1188, 1347 |
| DraIII | CACNNNGTG | 1 cut(s) | 340 |
| EaeI | YGGCCR | 2 cut(s) | 430, 1249 |
| Eam1104I | CTCTTC | 1 cut(s) | 863 |
| EarI | CTCTTC | 1 cut(s) | 863 |
| EciI | GGCGGA | 1 cut(s) | 1127 |
| Eco24I | GRGCYC | 1 cut(s) | 30 |
| Eco47I | GGWCC | 2 cut(s) | 4, 744 |
| Eco47III | AGCGCT | 1 cut(s) | 1341 |
| Eco57I | CTGAAG | 1 cut(s) | 893 |
| Eco88I | CYCGRG | 1 cut(s) | 23 |
| Eco91I | GGTNACC | 1 cut(s) | 1240 |
| EcoO109I | RGGNCCY | 2 cut(s) | 744, 1067 |
| EcoO65I | GGTNACC | 1 cut(s) | 1240 |
| EcoRII | CCWGG | 2 cut(s) | 336, 1283 |
| EcoT22I | ATGCAT | 1 cut(s) | 993 |
| EcoT38I | GRGCYC | 1 cut(s) | 30 |
| EgeI | GGCGCC | 1 cut(s) | 104 |
| EheI | GGCGCC | 1 cut(s) | 104 |
| FaeI | CATG | 9 cut(s) | 366, 437, 549, 619, 925, 995, 1088, 1127, 1261 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 180, 212, 845, 877, 1326, 1358 |
| FaqI | GGGAC | 2 cut(s) | 757, 1219 |
| FatI | CATG | 9 cut(s) | 362, 433, 545, 615, 921, 991, 1084, 1123, 1257 |
| FbaI | TGATCA | 1 cut(s) | 1347 |
| FblI | GTMKAC | 1 cut(s) | 162 |
| Fnu4HI | GCNGC | 2 cut(s) | 72, 209 |
| FokI | GGATG | 3 cut(s) | 678, 998, 1128 |
| FriOI | GRGCYC | 1 cut(s) | 30 |
| Fsp4HI | GCNGC | 2 cut(s) | 72, 209 |
| GlaI | GCGC | 5 cut(s) | 104, 144, 321, 323, 1341 |
| GluI | GCNGC | 2 cut(s) | 72, 209 |
| HaeII | RGCGCY | 2 cut(s) | 106, 1343 |
| HaeIII | GGCC | 3 cut(s) | 432, 1068, 1251 |
| HapII | CCGG | 1 cut(s) | 1071 |
| HgaI | GACGC | 1 cut(s) | 173 |
| HhaI | GCGC | 5 cut(s) | 105, 145, 322, 324, 1342 |
| Hin1I | GRCGYC | 2 cut(s) | 103, 401 |
| Hin1II | CATG | 9 cut(s) | 366, 437, 549, 619, 925, 995, 1088, 1127, 1261 |
| Hin6I | GCGC | 5 cut(s) | 103, 143, 320, 322, 1340 |
| HinP1I | GCGC | 5 cut(s) | 103, 143, 320, 322, 1340 |
| HincII | GTYRAC | 1 cut(s) | 163 |
| HindII | GTYRAC | 1 cut(s) | 163 |
| HindIII | AAGCTT | 1 cut(s) | 1265 |
| HinfI | GANTC | 4 cut(s) | 449, 457, 815, 1165 |
| HpaII | CCGG | 1 cut(s) | 1071 |
| HphI | GGTGA | 3 cut(s) | 31, 298, 1234 |
| Hpy166II | GTNNAC | 3 cut(s) | 163, 571, 738 |
| Hpy188I | TCNGA | 7 cut(s) | 16, 355, 399, 456, 723, 1016, 1323 |
| Hpy8I | GTNNAC | 3 cut(s) | 163, 571, 738 |
| Hpy99I | CGWCG | 4 cut(s) | 164, 167, 403, 406 |
| HpyAV | CCTTC | 6 cut(s) | 61, 70, 377, 492, 636, 638 |
| HpyCH4III | ACNGT | 7 cut(s) | 575, 608, 892, 1131, 1273, 1315, 1381 |
| HpyCH4IV | ACGT | 4 cut(s) | 159, 327, 401, 1224 |
| HpyCH4V | TGCA | 8 cut(s) | 181, 303, 471, 549, 681, 825, 897, 991 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1337, 1369 |
| HpyF3I | CTNAG | 4 cut(s) | 13, 267, 722, 784 |
| HpySE526I | ACGT | 4 cut(s) | 159, 327, 401, 1224 |
| Hsp92I | GRCGYC | 2 cut(s) | 103, 401 |
| Hsp92II | CATG | 9 cut(s) | 366, 437, 549, 619, 925, 995, 1088, 1127, 1261 |
| HspAI | GCGC | 5 cut(s) | 103, 143, 320, 322, 1340 |
| KasI | GGCGCC | 1 cut(s) | 102 |
| KflI | GGGWCCC | 1 cut(s) | 744 |
| KpnI | GGTACC | 1 cut(s) | 716 |
| Ksp22I | TGATCA | 1 cut(s) | 1347 |
| Kzo9I | GATC | 7 cut(s) | 216, 394, 1056, 1117, 1134, 1188, 1347 |
| LguI | GCTCTTC | 1 cut(s) | 863 |
| LmnI | GCTCC | 5 cut(s) | 542, 612, 796, 946, 1105 |
| Lsp1109I | GCAGC | 1 cut(s) | 83 |
| LweI | GCATC | 2 cut(s) | 312, 1020 |
| MabI | ACCWGGT | 1 cut(s) | 336 |
| MaeII | ACGT | 4 cut(s) | 159, 327, 401, 1224 |
| MaeIII | GTNAC | 3 cut(s) | 37, 1162, 1240 |
| MalI | GATC | 7 cut(s) | 218, 396, 1058, 1119, 1136, 1190, 1349 |
| MboI | GATC | 7 cut(s) | 216, 394, 1056, 1117, 1134, 1188, 1347 |
| MboII | GAAGA | 5 cut(s) | 142, 184, 383, 850, 862 |
| MflI | RGATCY | 3 cut(s) | 1056, 1117, 1134 |
| MhlI | GDGCHC | 1 cut(s) | 30 |
| MlsI | TGGCCA | 1 cut(s) | 432 |
| MluCI | AATT | 6 cut(s) | 248, 277, 298, 496, 1061, 1077 |
| MluNI | TGGCCA | 1 cut(s) | 432 |
| Mly113I | GGCGCC | 1 cut(s) | 103 |
| MlyI | GAGTC | 3 cut(s) | 451, 824, 1159 |
| MmeI | TCCRAC | 2 cut(s) | 422, 590 |
| Mox20I | TGGCCA | 1 cut(s) | 432 |
| Mph1103I | ATGCAT | 1 cut(s) | 993 |
| MroXI | GAANNNNTTC | 1 cut(s) | 441 |
| MscI | TGGCCA | 1 cut(s) | 432 |
| MseI | TTAA | 4 cut(s) | 477, 650, 977, 1387 |
| MslI | CAYNNNNRTG | 1 cut(s) | 941 |
| Msp20I | TGGCCA | 1 cut(s) | 432 |
| MspCI | CTTAAG | 1 cut(s) | 649 |
| MspI | CCGG | 1 cut(s) | 1071 |
| MspR9I | CCNGG | 3 cut(s) | 338, 1071, 1285 |
| MvaI | CCWGG | 2 cut(s) | 338, 1285 |
| MvnI | CGCG | 3 cut(s) | 143, 145, 322 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1337, 1369 |
| NarI | GGCGCC | 1 cut(s) | 103 |
| NciI | CCSGG | 1 cut(s) | 1071 |
| NdeII | GATC | 7 cut(s) | 216, 394, 1056, 1117, 1134, 1188, 1347 |
| NlaIII | CATG | 9 cut(s) | 366, 437, 549, 619, 925, 995, 1088, 1127, 1261 |
| NlaIV | GGNNCC | 8 cut(s) | 104, 714, 745, 746, 948, 1069, 1119, 1136 |
| NmeAIII | GCCGAG | 1 cut(s) | 297 |
| NmuCI | GTSAC | 3 cut(s) | 37, 1162, 1240 |
| NsiI | ATGCAT | 1 cut(s) | 993 |
| NspI | RCATGY | 1 cut(s) | 549 |
| PaeI | GCATGC | 1 cut(s) | 549 |
| PagI | TCATGA | 3 cut(s) | 1084, 1123, 1257 |
| PauI | GCGCGC | 1 cut(s) | 320 |
| PciSI | GCTCTTC | 1 cut(s) | 863 |
| PdmI | GAANNNNTTC | 1 cut(s) | 441 |
| PfeI | GAWTC | 1 cut(s) | 449 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 99 |
| PkrI | GCNGC | 2 cut(s) | 73, 210 |
| PleI | GAGTC | 3 cut(s) | 451, 823, 1159 |
| PluTI | GGCGCC | 1 cut(s) | 106 |
| PpsI | GAGTC | 3 cut(s) | 451, 823, 1159 |
| Ppu21I | YACGTR | 1 cut(s) | 1225 |
| PpuMI | RGGWCCY | 1 cut(s) | 744 |
| PsiI | TTATAA | 1 cut(s) | 675 |
| Psp5II | RGGWCCY | 1 cut(s) | 744 |
| Psp6I | CCWGG | 2 cut(s) | 336, 1283 |
| PspEI | GGTNACC | 1 cut(s) | 1240 |
| PspGI | CCWGG | 2 cut(s) | 336, 1283 |
| PspN4I | GGNNCC | 8 cut(s) | 104, 714, 745, 746, 948, 1069, 1119, 1136 |
| PspPI | GGNCC | 3 cut(s) | 4, 744, 1067 |
| PspPPI | RGGWCCY | 1 cut(s) | 744 |
| PsuI | RGATCY | 3 cut(s) | 1056, 1117, 1134 |
| PteI | GCGCGC | 1 cut(s) | 320 |
| RsaI | GTAC | 2 cut(s) | 714, 737 |
| RsaNI | GTAC | 2 cut(s) | 713, 736 |
| RseI | CAYNNNNRTG | 1 cut(s) | 941 |
| SalI | GTCGAC | 1 cut(s) | 161 |
| SapI | GCTCTTC | 1 cut(s) | 863 |
| SaqAI | TTAA | 4 cut(s) | 477, 650, 977, 1387 |
| SatI | GCNGC | 2 cut(s) | 72, 209 |
| Sau3AI | GATC | 7 cut(s) | 216, 394, 1056, 1117, 1134, 1188, 1347 |
| Sau96I | GGNCC | 3 cut(s) | 4, 744, 1067 |
| SchI | GAGTC | 3 cut(s) | 451, 824, 1159 |
| ScrFI | CCNGG | 3 cut(s) | 338, 1071, 1285 |
| SduI | GDGCHC | 1 cut(s) | 30 |
| SexAI | ACCWGGT | 1 cut(s) | 336 |
| SfaNI | GCATC | 2 cut(s) | 312, 1020 |
| SfoI | GGCGCC | 1 cut(s) | 104 |
| SgrDI | CGTCGACG | 1 cut(s) | 161 |
| SinI | GGWCC | 2 cut(s) | 4, 744 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 941 |
| SmlI | CTYRAG | 6 cut(s) | 584, 649, 730, 812, 877, 1052 |
| SmoI | CTYRAG | 6 cut(s) | 584, 649, 730, 812, 877, 1052 |
| SphI | GCATGC | 1 cut(s) | 549 |
| Sse9I | AATT | 6 cut(s) | 248, 277, 298, 496, 1061, 1077 |
| SsiI | CCGC | 3 cut(s) | 7, 208, 1138 |
| SspDI | GGCGCC | 1 cut(s) | 102 |
| SspI | AATATT | 1 cut(s) | 1327 |
| StyD4I | CCNGG | 3 cut(s) | 336, 1069, 1283 |
| TaaI | ACNGT | 7 cut(s) | 575, 608, 892, 1131, 1273, 1315, 1381 |
| TaiI | ACGT | 4 cut(s) | 162, 330, 404, 1227 |
| TaqI | TCGA | 3 cut(s) | 132, 162, 1300 |
| TasI | AATT | 6 cut(s) | 248, 277, 298, 496, 1061, 1077 |
| TauI | GCSGC | 1 cut(s) | 211 |
| TfiI | GAWTC | 1 cut(s) | 449 |
| Tru1I | TTAA | 4 cut(s) | 477, 650, 977, 1387 |
| Tru9I | TTAA | 4 cut(s) | 477, 650, 977, 1387 |
| TscAI | CASTG | 4 cut(s) | 218, 611, 745, 1119 |
| TseFI | GTSAC | 3 cut(s) | 37, 1162, 1240 |
| TseI | GCWGC | 1 cut(s) | 71 |
| Tsp45I | GTSAC | 3 cut(s) | 37, 1162, 1240 |
| TspDTI | ATGAA | 8 cut(s) | 142, 384, 450, 925, 1073, 1110, 1140, 1274 |
| TspRI | CASTG | 4 cut(s) | 218, 611, 745, 1119 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 99 |
| Vha464I | CTTAAG | 1 cut(s) | 649 |
| VpaK11BI | GGWCC | 2 cut(s) | 4, 744 |
| XapI | RAATTY | 4 cut(s) | 248, 277, 496, 1077 |
| XceI | RCATGY | 1 cut(s) | 549 |
| XmiI | GTMKAC | 1 cut(s) | 162 |
| XmnI | GAANNNNTTC | 1 cut(s) | 441 |
| ZraI | GACGTC | 1 cut(s) | 402 |
| Zsp2I | ATGCAT | 1 cut(s) | 993 |