Rh4AG168100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0003556
Physical Location & Seq
Forward (+)
42338922 .. 42339431
510 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG168100.1

Sequence Viewer

Length: 372 bp
ATGGCTGTATTCGACATTGGAGCAGGAGCGTTGGAAGAGGCATACCTTGAGTTTGGACTCGAGGCATACCTCCATCAACTTCCCACCGTTAGGATACTTACAGTTTGCACATACTTGCTTCAGTTTTTTGTTATATATGCGTTAATTGTTCCAGGTTCTTCCATTGGAACTGGAATCTTCTGGTGTAACTCCTTTCTTTGGCATGGCGCATTTAACTCTGAGACTGCAATGCTCAGTTGTGAGCAAAAAGGGATCCAGTATCTCCTCAGAAGTAATTACCCTTGCTTGCAAGTTTGGTTCATCCAGATAGCAGTCCCTCAGAGAATTGTTGATCTTTTTTTTGATCAAGGAGAATTGTTGATCTTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.97

Weight (kDa)

4.52

Isoelectric Point (pI)

41.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 247, 260
AcuI CTGAAG 1 cut(s) 104
AfiI CCNNNNNNNGG 2 cut(s) 90, 198
AjnI CCWGG 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 215
AlwI GGATC 2 cut(s) 247, 260
Ama87I CYCGRG 1 cut(s) 59
AspLEI GCGC 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 59
BamHI GGATCC 1 cut(s) 252
BccI CCATC 1 cut(s) 81
BciT130I CCWGG 1 cut(s) 153
BciVI GTATCC 1 cut(s) 87
BclI TGATCA 1 cut(s) 343
BcoDI GTCTC 1 cut(s) 215
BfuI GTATCC 1 cut(s) 87
Bme1390I CCNGG 1 cut(s) 153
BmeT110I CYCGRG 1 cut(s) 59
BmiI GGNNCC 1 cut(s) 254
BmrFI CCNGG 1 cut(s) 153
BpuEI CTTGAG 1 cut(s) 68
Bsc4I CCNNNNNNNGG 2 cut(s) 90, 198
Bse1I ACTGG 2 cut(s) 175, 256
Bse3DI GCAATG 1 cut(s) 234
BseBI CCWGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 300
BseLI CCNNNNNNNGG 2 cut(s) 90, 198
BseMI GCAATG 1 cut(s) 234
BseMII CTCAG 4 cut(s) 210, 247, 280, 332
BseNI ACTGG 2 cut(s) 175, 256
BseRI GAGGAG 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 59
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 2 cut(s) 90, 198
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 299
BsoBI CYCGRG 1 cut(s) 59
Bsp143I GATC 4 cut(s) 252, 331, 343, 360
BspCNI CTCAG 4 cut(s) 211, 246, 279, 331
BspLI GGNNCC 1 cut(s) 254
BspPI GGATC 2 cut(s) 247, 260
BsrDI GCAATG 1 cut(s) 234
BsrI ACTGG 2 cut(s) 175, 256
BssMI GATC 4 cut(s) 252, 331, 343, 360
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 2 cut(s) 88, 103
Bst6I CTCTTC 1 cut(s) 30
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 4 cut(s) 219, 233, 266, 318
BstF5I GGATG 1 cut(s) 300
BstHHI GCGC 1 cut(s) 209
BstKTI GATC 4 cut(s) 255, 334, 346, 363
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 4 cut(s) 252, 331, 343, 360
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
BsuI GTATCC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 287
CfoI GCGC 1 cut(s) 209
CviAII CATG 1 cut(s) 203
CviJI RGCY 1 cut(s) 5
CviKI_1 RGCY 1 cut(s) 5
DdeI CTNAG 4 cut(s) 219, 233, 266, 318
DpnI GATC 4 cut(s) 254, 333, 345, 362
DpnII GATC 4 cut(s) 252, 331, 343, 360
Eam1104I CTCTTC 1 cut(s) 30
EarI CTCTTC 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 104
Eco88I CYCGRG 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 151
FaeI CATG 1 cut(s) 206
FaiI YATR 7 cut(s) 43, 67, 112, 134, 136, 138, 204
FaqI GGGAC 1 cut(s) 299
FatI CATG 1 cut(s) 202
FbaI TGATCA 1 cut(s) 343
FokI GGATG 1 cut(s) 287
GlaI GCGC 1 cut(s) 208
HhaI GCGC 1 cut(s) 209
Hin1II CATG 1 cut(s) 206
Hin6I GCGC 1 cut(s) 207
HinP1I GCGC 1 cut(s) 207
HinfI GANTC 2 cut(s) 57, 174
Hpy188I TCNGA 3 cut(s) 220, 269, 321
Hpy188III TCNNGA 2 cut(s) 304, 364
HpyCH4III ACNGT 2 cut(s) 88, 103
HpyCH4V TGCA 3 cut(s) 108, 227, 289
HpyF3I CTNAG 4 cut(s) 219, 233, 266, 318
Hsp92II CATG 1 cut(s) 206
HspAI GCGC 1 cut(s) 207
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 4 cut(s) 252, 331, 343, 360
LmnI GCTCC 2 cut(s) 20, 26
LpnPI CCDG 7 cut(s) 9, 138, 156, 165, 166, 269, 317
MaeIII GTNAC 1 cut(s) 185
MalI GATC 4 cut(s) 254, 333, 345, 362
MboI GATC 4 cut(s) 252, 331, 343, 360
MboII GAAGA 3 cut(s) 47, 150, 169
MflI RGATCY 1 cut(s) 252
MluCI AATT 4 cut(s) 144, 274, 324, 353
MlyI GAGTC 1 cut(s) 51
MmeI TCCRAC 1 cut(s) 12
MnlI CCTC 5 cut(s) 31, 55, 80, 275, 327
MseI TTAA 2 cut(s) 143, 213
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
NdeII GATC 4 cut(s) 252, 331, 343, 360
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 254
PaeR7I CTCGAG 1 cut(s) 59
PfeI GAWTC 1 cut(s) 174
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 1 cut(s) 254
PspXI VCTCGAGB 1 cut(s) 59
PsuI RGATCY 1 cut(s) 252
SaqAI TTAA 2 cut(s) 143, 213
Sau3AI GATC 4 cut(s) 252, 331, 343, 360
SchI GAGTC 1 cut(s) 51
ScrFI CCNGG 1 cut(s) 153
SetI ASST 3 cut(s) 48, 72, 157
Sfr274I CTCGAG 1 cut(s) 59
SlaI CTCGAG 1 cut(s) 59
SmlI CTYRAG 2 cut(s) 47, 59
SmoI CTYRAG 2 cut(s) 47, 59
Sse9I AATT 4 cut(s) 144, 274, 324, 353
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 2 cut(s) 88, 103
TaqI TCGA 2 cut(s) 12, 60
TasI AATT 4 cut(s) 144, 274, 324, 353
TfiI GAWTC 1 cut(s) 174
Tru1I TTAA 2 cut(s) 143, 213
Tru9I TTAA 2 cut(s) 143, 213
TspDTI ATGAA 1 cut(s) 289
XhoI CTCGAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.