Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0003556

Physical Location & Seq

Genomic Coordinates Reverse (-)

28776984 .. 28778782

Gene Structure 1799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1208600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGGACCGCCTCTCAAACCTCCCTCATCCCCTCCTCTCGCACATACTCTCCTCCTTGCCCTTCAAAGAAGCGGCAAAAACCTCCTCCTTGTCGAAGCAATGGCGCAACCAATGGAAATCAACCCGAAACCTCGACTTCAACCACCTTTACTTCGCCAATCGTGATTCTAACGGAGATGTCAAACTCCAACCACAAATCTTCACCGATTTCGTCCAACAATTTATTGCAAACAACAAAAGTCCCATCATGGACAAACTTTCCCTCACATTTTCTTCGCCTGGAGACTCCCAAGAATTGGTGGAAAAATGCATCACATTTTCTTTCGAGCGCAACGTAAAACACCTGAAGCTTGATTTCTCCGACCCCACATGGGATGAAAACGACCTCGATGGCCCGGCACATCCAATGTTTGATTTGCCTCTGTCTTTTTACAACCATCAAGTTCTTGAATCCATGACGCTCTTTTCTTGCAAATTCGACGTTTTAAGATTCAAGAATTTTGGGTTGCTGAAAAGTATTTCGCTGCGTTGGATCGAACTCAAAGTTTCTACTCTCAAGGCTTTGCTGGCCAACTGTGGGTGTCTCGAGAGTTTGAGCGTGAAGAGTTGCTGGAACATGGACGGCCTTGATGTTTGTGGGAAGGACTTGAAGTTGTCAACTTTGGTTGTTGAAAAATGCCATTTTCTGAATCCGTACTTTGAAATCGAGGCTCCAAATCTCAAATATTTGAAGTATTCTGGCACTGTTGGTGTATTTTTTGTGAACGGAACTGGATTGGAGGAGGCAGACCTTGATTTTGGGCTTGAGTCTGAATGTGATGAGTCACTGGGAGATTCTCTCTATCAATCACTCAATCAAATTTGCCCTACTACGGCTTTGACCGTTTGCACCTACATGCTTCAGGTTATTCCTATGGGAGAGGAACCACTTGGTATGGTACCTAGGTTGAATGTTACACATTTGACCTTAAGGACTGCCATGCATAATTATGAACAATATGGCATCCGGTTTTTCTTTAATAGTTGTCCTCGTTTGGAGACTCTTACAATCGACATAGACCGCTCACGCGGAATATGTGATGAATATGAACCTCCATTGGGGGATAAGTTCGAGTGTTTGTGGACTCGGAGTGCAATAATTTTCAAGTGCATAACTCAAACTTTGAGGAAAGTTGAGATCAAGGGCTTCAAGGGGACGCCAAATGAAGTCTATGTGATGTTCTATCTTGTCAACCATGCTCGTGTGCTGGAGAAACTTACTGTGATCACCTCAAGTGAAGAAAGCAACCGTGGCCCAGAATTTTTTCGCAGTGTAGCTGATCAAGTGCATGGTTTTAGAAAGGCATCGGAGAATCTGTCCATAACAATTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

458

Amino Acids

52.18

Weight (kDa)

5.73

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	4 - 43	1.3e-08	F-box domain
LRR_At5g56370	PF24758	132 - 243	2.8e-08	FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1	PF23622	145 - 427	4.3e-18	At1g61320/AtMIF1, LRR domain
FBD	PF08387	381 - 420	4.9e-09	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56400 AT1G56400 AT2G17305 AT3G29830 AT3G29830 AT3G62230 AT5G54820
fragaria_vesca	FvH4_7g19741
malus_domestica	MD03G1208600.v1.1 MD11G1222600.v1.1 MD11G1222800.v1.1 MD11G1223200.v1.1
prunus_persica	Prupe.4G208100_v2.0.a1 Prupe.4G208200_v2.0.a1 Prupe.4G208300_v2.0.a1
pyrus_communis	pycom03g15720 pycom03g15760 pycom11g19660
rosa_chinensis	RchiOBHm_Chr1g0363631 RchiOBHm_Chr7g0214121
rosa_laevigata	RLG00000008357 RLG00000027555
rosa_multiflora	Rmu_sc0000548.1_g000010 Rmu_sc0000675.1_g000034
rosa_roxburghii	Rroxscaffold_4G00293030
rosa_rugosa	Rorug01G0308300
rosa_samantha	Rh1AG089100 Rh1AG317200 Rh1BG280600 Rh1CG296700 Rh1DG311800 Rh4AG168100 Rh4BG165000
rosa_wichuraiana	Rw1G006910 Rw1G028130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	937
AccB1I	GGYRCC	1 cut(s)	937
AccB7I	CCANNNNNTGG	1 cut(s)	295
AccBSI	CCGCTC	1 cut(s)	1062
AccII	CGCG	1 cut(s)	1068
AciI	CCGC	4 cut(s)	7, 71, 1060, 1068
AclWI	GGATC	1 cut(s)	539
AcoI	YGGCCR	1 cut(s)	567
AcsI	RAATTY	4 cut(s)	473, 496, 858, 1298
AcuI	CTGAAG	2 cut(s)	365, 884
AcyI	GRCGYC	1 cut(s)	1196
AfaI	GTAC	2 cut(s)	695, 939
AfiI	CCNNNNNNNGG	5 cut(s)	295, 370, 576, 871, 1097
AflII	CTTAAG	1 cut(s)	967
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	2 cut(s)	349, 1316
AluI	AGCT	2 cut(s)	349, 1316
Alw26I	GTCTC	3 cut(s)	276, 587, 1031
AlwI	GGATC	1 cut(s)	539
Ama87I	CYCGRG	1 cut(s)	584
AoxI	GGCC	4 cut(s)	391, 567, 622, 1291
ApeKI	GCWGC	1 cut(s)	523
ApoI	RAATTY	4 cut(s)	473, 496, 858, 1298
ArsI	GACNNNNNNTTYG	2 cut(s)	779, 811
Asp700I	GAANNNNTTC	1 cut(s)	1302
Asp718I	GGTACC	1 cut(s)	937
AspA2I	CCTAGG	1 cut(s)	941
AspLEI	GCGC	2 cut(s)	105, 330
AspS9I	GGNCC	3 cut(s)	4, 392, 1292
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	2 cut(s)	193, 1258
AvaI	CYCGRG	1 cut(s)	584
AvaII	GGWCC	1 cut(s)	4
AvrII	CCTAGG	1 cut(s)	941
BaeI	ACNNNNGTAYC	2 cut(s)	929, 962
BalI	TGGCCA	1 cut(s)	569
BanI	GGYRCC	1 cut(s)	937
BauI	CACGAG	1 cut(s)	1239
BbvI	GCAGC	1 cut(s)	510
BccI	CCATC	3 cut(s)	251, 383, 444
BceAI	ACGGC	2 cut(s)	637, 888
BciT130I	CCWGG	1 cut(s)	279
BclI	TGATCA	2 cut(s)	1263, 1318
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	3 cut(s)	276, 587, 1031
BfaI	CTAG	1 cut(s)	942
BfrI	CTTAAG	1 cut(s)	967
BisI	GCNGC	2 cut(s)	72, 524
BlnI	CCTAGG	1 cut(s)	941
BlsI	GCNGC	2 cut(s)	73, 525
Bme1390I	CCNGG	2 cut(s)	279, 395
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	584
BmgT120I	GGNCC	3 cut(s)	4, 392, 1292
BmiI	GGNNCC	3 cut(s)	711, 924, 939
BmrFI	CCNGG	2 cut(s)	279, 395
BmrI	ACTGGG	1 cut(s)	836
BmsI	GCATC	3 cut(s)	318, 1011, 1352
BmuI	ACTGGG	1 cut(s)	836
BplI	GAGNNNNNCTC	2 cut(s)	822, 854
BpmI	CTGGAG	2 cut(s)	300, 1268
BpuEI	CTTGAG	3 cut(s)	539, 824, 1255
BpuMI	CCSGG	1 cut(s)	395
BsaHI	GRCGYC	1 cut(s)	1196
BsaJI	CCNNGG	2 cut(s)	941, 1288
BsaWI	WCCGGW	1 cut(s)	1005
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 1340, 1370
Bsc4I	CCNNNNNNNGG	5 cut(s)	295, 370, 576, 871, 1097
Bse1I	ACTGG	2 cut(s)	775, 831
Bse3DI	GCAATG	1 cut(s)	104
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	2 cut(s)	941, 1288
BseGI	GGATG	4 cut(s)	25, 379, 400, 1002
BseLI	CCNNNNNNNGG	5 cut(s)	295, 370, 576, 871, 1097
BseMI	GCAATG	1 cut(s)	104
BseNI	ACTGG	2 cut(s)	775, 831
BseRI	GAGGAG	4 cut(s)	23, 40, 73, 794
BseXI	GCAGC	1 cut(s)	510
Bsh1236I	CGCG	1 cut(s)	1068
BshFI	GGCC	4 cut(s)	393, 569, 624, 1293
BshNI	GGYRCC	1 cut(s)	937
BsiHKCI	CYCGRG	1 cut(s)	584
BsiSI	CCGG	2 cut(s)	395, 1006
BslFI	GGGAC	2 cut(s)	225, 1207
BslI	CCNNNNNNNGG	5 cut(s)	295, 370, 576, 871, 1097
BsmAI	GTCTC	3 cut(s)	276, 587, 1031
BsmFI	GGGAC	2 cut(s)	225, 1207
BsnI	GGCC	4 cut(s)	393, 569, 624, 1293
BsoBI	CYCGRG	1 cut(s)	584
Bsp143I	GATC	4 cut(s)	531, 1176, 1263, 1318
BspACI	CCGC	4 cut(s)	7, 71, 1060, 1068
BspANI	GGCC	4 cut(s)	393, 569, 624, 1293
BspFNI	CGCG	1 cut(s)	1068
BspLI	GGNNCC	3 cut(s)	711, 924, 939
BspPI	GGATC	1 cut(s)	539
BspT107I	GGYRCC	1 cut(s)	937
BspTI	CTTAAG	1 cut(s)	967
BsrBI	CCGCTC	1 cut(s)	1062
BsrDI	GCAATG	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	775, 831
BssECI	CCNNGG	2 cut(s)	941, 1288
BssMI	GATC	4 cut(s)	531, 1176, 1263, 1318
BssNI	GRCGYC	1 cut(s)	1196
BssSI	CACGAG	1 cut(s)	1239
BssT1I	CCWWGG	1 cut(s)	941
Bst2BI	CACGAG	1 cut(s)	1239
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	5 cut(s)	575, 745, 883, 1261, 1289
Bst6I	CTCTTC	1 cut(s)	596
BstACI	GRCGYC	1 cut(s)	1196
BstAFI	CTTAAG	1 cut(s)	967
BstC8I	GCNNGC	1 cut(s)	567
BstDSI	CCRYGG	1 cut(s)	1288
BstF5I	GGATG	4 cut(s)	25, 379, 400, 1002
BstFNI	CGCG	1 cut(s)	1068
BstHHI	GCGC	2 cut(s)	105, 330
BstKTI	GATC	4 cut(s)	534, 1179, 1266, 1321
BstMAI	GTCTC	3 cut(s)	276, 587, 1031
BstMBI	GATC	4 cut(s)	531, 1176, 1263, 1318
BstMWI	GCNNNNNNNGC	2 cut(s)	566, 1290
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	1 cut(s)	898
BstSCI	CCNGG	2 cut(s)	277, 393
BstUI	CGCG	1 cut(s)	1068
BstV1I	GCAGC	1 cut(s)	510
BsuRI	GGCC	4 cut(s)	393, 569, 624, 1293
BtgI	CCRYGG	1 cut(s)	1288
BtsCI	GGATG	4 cut(s)	25, 379, 400, 1002
BtsI	GCAGTG	1 cut(s)	1315
BtsIMutI	CAGTG	3 cut(s)	741, 824, 1315
Cac8I	GCNNGC	1 cut(s)	567
CfoI	GCGC	2 cut(s)	105, 330
Cfr13I	GGNCC	3 cut(s)	4, 392, 1292
CseI	GACGC	2 cut(s)	466, 1204
Csp6I	GTAC	2 cut(s)	694, 938
CviAII	CATG	8 cut(s)	247, 369, 454, 616, 895, 979, 1235, 1328
CviQI	GTAC	2 cut(s)	694, 938
DpnI	GATC	4 cut(s)	533, 1178, 1265, 1320
DpnII	GATC	4 cut(s)	531, 1176, 1263, 1318
EaeI	YGGCCR	1 cut(s)	567
Eam1104I	CTCTTC	1 cut(s)	596
EarI	CTCTTC	1 cut(s)	596
Eco130I	CCWWGG	1 cut(s)	941
Eco47I	GGWCC	1 cut(s)	4
Eco57I	CTGAAG	2 cut(s)	365, 884
Eco88I	CYCGRG	1 cut(s)	584
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	1 cut(s)	941
EcoT22I	ATGCAT	2 cut(s)	311, 984
ErhI	CCWWGG	1 cut(s)	941
FaeI	CATG	8 cut(s)	250, 372, 457, 619, 898, 982, 1238, 1331
FaqI	GGGAC	2 cut(s)	225, 1207
FatI	CATG	8 cut(s)	246, 368, 453, 615, 894, 978, 1234, 1327
FbaI	TGATCA	2 cut(s)	1263, 1318
Fnu4HI	GCNGC	2 cut(s)	72, 524
FokI	GGATG	4 cut(s)	12, 386, 387, 989
Fsp4HI	GCNGC	2 cut(s)	72, 524
FspBI	CTAG	1 cut(s)	942
GlaI	GCGC	2 cut(s)	104, 329
GluI	GCNGC	2 cut(s)	72, 524
GsuI	CTGGAG	2 cut(s)	300, 1268
HaeIII	GGCC	4 cut(s)	393, 569, 624, 1293
HapII	CCGG	2 cut(s)	395, 1006
HgaI	GACGC	2 cut(s)	466, 1204
HhaI	GCGC	2 cut(s)	105, 330
Hin1I	GRCGYC	1 cut(s)	1196
Hin1II	CATG	8 cut(s)	250, 372, 457, 619, 898, 982, 1238, 1331
Hin6I	GCGC	2 cut(s)	103, 328
HinP1I	GCGC	2 cut(s)	103, 328
HincII	GTYRAC	2 cut(s)	657, 1231
HindII	GTYRAC	2 cut(s)	657, 1231
HindIII	AAGCTT	1 cut(s)	347
HpaII	CCGG	2 cut(s)	395, 1006
HphI	GGTGA	2 cut(s)	193, 1258
Hpy166II	GTNNAC	4 cut(s)	657, 763, 1122, 1231
Hpy188I	TCNGA	5 cut(s)	361, 687, 811, 1128, 1348
Hpy188III	TCNNGA	5 cut(s)	161, 446, 493, 584, 586
Hpy8I	GTNNAC	4 cut(s)	657, 763, 1122, 1231
Hpy99I	CGWCG	1 cut(s)	482
HpyAV	CCTTC	2 cut(s)	70, 634
HpyCH4III	ACNGT	5 cut(s)	575, 745, 883, 1261, 1289
HpyCH4IV	ACGT	2 cut(s)	333, 480
HpyCH4V	TGCA	8 cut(s)	227, 309, 471, 888, 982, 1133, 1149, 1327
HpyF10VI	GCNNNNNNNGC	2 cut(s)	566, 1290
HpySE526I	ACGT	2 cut(s)	333, 480
Hsp92I	GRCGYC	1 cut(s)	1196
Hsp92II	CATG	8 cut(s)	250, 372, 457, 619, 898, 982, 1238, 1331
HspAI	GCGC	2 cut(s)	103, 328
KpnI	GGTACC	1 cut(s)	941
Ksp22I	TGATCA	2 cut(s)	1263, 1318
Kzo9I	GATC	4 cut(s)	531, 1176, 1263, 1318
LmnI	GCTCC	1 cut(s)	715
Lsp1109I	GCAGC	1 cut(s)	510
LweI	GCATC	3 cut(s)	318, 1011, 1352
MaeI	CTAG	1 cut(s)	942
MaeII	ACGT	2 cut(s)	333, 480
MaeIII	GTNAC	2 cut(s)	822, 952
MalI	GATC	4 cut(s)	533, 1178, 1265, 1320
MbiI	CCGCTC	1 cut(s)	1062
MboI	GATC	4 cut(s)	531, 1176, 1263, 1318
MboII	GAAGA	4 cut(s)	190, 264, 613, 1289
MfeI	CAATTG	1 cut(s)	1365
MlsI	TGGCCA	1 cut(s)	569
MluCI	AATT	9 cut(s)	218, 293, 473, 496, 858, 985, 1137, 1298, 1365
MluNI	TGGCCA	1 cut(s)	569
MlyI	GAGTC	5 cut(s)	278, 815, 830, 1033, 1117
MmeI	TCCRAC	4 cut(s)	211, 238, 384, 509
Mox20I	TGGCCA	1 cut(s)	569
Mph1103I	ATGCAT	2 cut(s)	311, 984
MroXI	GAANNNNTTC	1 cut(s)	1302
MscI	TGGCCA	1 cut(s)	569
MseI	TTAA	4 cut(s)	485, 968, 1017, 1372
MslI	CAYNNNNRTG	3 cut(s)	893, 987, 1239
Msp20I	TGGCCA	1 cut(s)	569
MspCI	CTTAAG	1 cut(s)	967
MspI	CCGG	2 cut(s)	395, 1006
MspR9I	CCNGG	2 cut(s)	279, 395
MunI	CAATTG	1 cut(s)	1365
MvaI	CCWGG	1 cut(s)	279
MvnI	CGCG	1 cut(s)	1068
MwoI	GCNNNNNNNGC	2 cut(s)	566, 1290
NciI	CCSGG	1 cut(s)	395
NdeII	GATC	4 cut(s)	531, 1176, 1263, 1318
NlaIII	CATG	8 cut(s)	250, 372, 457, 619, 898, 982, 1238, 1331
NlaIV	GGNNCC	3 cut(s)	711, 924, 939
NmuCI	GTSAC	1 cut(s)	822
NsiI	ATGCAT	2 cut(s)	311, 984
NspI	RCATGY	1 cut(s)	898
PaeR7I	CTCGAG	1 cut(s)	584
PcsI	WCGNNNNNNNCGW	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	1302
PfeI	GAWTC	6 cut(s)	164, 449, 489, 688, 833, 1351
PflMI	CCANNNNNTGG	1 cut(s)	295
PkrI	GCNGC	2 cut(s)	73, 525
PleI	GAGTC	5 cut(s)	278, 814, 829, 1033, 1117
PpsI	GAGTC	5 cut(s)	278, 814, 829, 1033, 1117
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	3 cut(s)	711, 924, 939
PspPI	GGNCC	3 cut(s)	4, 392, 1292
RsaI	GTAC	2 cut(s)	695, 939
RsaNI	GTAC	2 cut(s)	694, 938
RseI	CAYNNNNRTG	3 cut(s)	893, 987, 1239
SaqAI	TTAA	4 cut(s)	485, 968, 1017, 1372
SatI	GCNGC	2 cut(s)	72, 524
Sau3AI	GATC	4 cut(s)	531, 1176, 1263, 1318
Sau96I	GGNCC	3 cut(s)	4, 392, 1292
SchI	GAGTC	5 cut(s)	278, 815, 830, 1033, 1117
ScrFI	CCNGG	2 cut(s)	279, 395
SfaNI	GCATC	3 cut(s)	318, 1011, 1352
Sfr274I	CTCGAG	1 cut(s)	584
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	584
SmiMI	CAYNNNNRTG	3 cut(s)	893, 987, 1239
SmlI	CTYRAG	5 cut(s)	554, 584, 803, 967, 1270
SmoI	CTYRAG	5 cut(s)	554, 584, 803, 967, 1270
Sse9I	AATT	9 cut(s)	218, 293, 473, 496, 858, 985, 1137, 1298, 1365
SsiI	CCGC	4 cut(s)	7, 71, 1060, 1068
SspI	AATATT	1 cut(s)	725
SspMI	CTAG	1 cut(s)	942
StyD4I	CCNGG	2 cut(s)	277, 393
StyI	CCWWGG	1 cut(s)	941
TaaI	ACNGT	5 cut(s)	575, 745, 883, 1261, 1289
TaiI	ACGT	2 cut(s)	336, 483
TasI	AATT	9 cut(s)	218, 293, 473, 496, 858, 985, 1137, 1298, 1365
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	6 cut(s)	164, 449, 489, 688, 833, 1351
Tru1I	TTAA	4 cut(s)	485, 968, 1017, 1372
Tru9I	TTAA	4 cut(s)	485, 968, 1017, 1372
TscAI	CASTG	3 cut(s)	748, 831, 1315
TseFI	GTSAC	1 cut(s)	822
TseI	GCWGC	1 cut(s)	523
Tsp45I	GTSAC	1 cut(s)	822
TspDTI	ATGAA	5 cut(s)	390, 1005, 1095, 1101, 1218
TspGWI	ACGGA	3 cut(s)	186, 681, 780
TspRI	CASTG	3 cut(s)	748, 831, 1315
Van91I	CCANNNNNTGG	1 cut(s)	295
Vha464I	CTTAAG	1 cut(s)	967
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	4 cut(s)	473, 496, 858, 1298
XceI	RCATGY	1 cut(s)	898
XhoI	CTCGAG	1 cut(s)	584
XmaJI	CCTAGG	1 cut(s)	941
XmnI	GAANNNNTTC	1 cut(s)	1302
XspI	CTAG	1 cut(s)	942
Zsp2I	ATGCAT	2 cut(s)	311, 984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.