Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003556

Physical Location & Seq

Genomic Coordinates Reverse (-)

32627395 .. 32628422

Gene Structure 1028 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1222600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGACAAGTTCTCACAGTTACCCGAACCTCTCCTGATCATCATCGCCAACTTGCCCTTCAAAGAAGCCGCAAGAAACTCCATTCTCTCCAAGCTATGGCGTCGCCTTGGGCGTTCGACCCAAATCGTCGAGTTCAACGAGCGTTTCTTTGTGAATACTGACGCAGCACCGGCGGACAGAGCGATTCAGAGACTAACTTTCATTGATTTTGTGCGCCGTTGGATTGACAACAGCCCAAAAACGCCTGTGGGTAAGCATGATGTCAAACAGTTGGCGCTCGATTTTTCTGACCCCGCATGGGATGAACTCGGGTATGATTACCACGAGTCCTATTTTGATTTGCCTTTGGATGTGTATAATCACCGAGTTCTTGAGTCCCTAGCTCTGTTTTCTTGCAATTTTGATGCGGATTTGGTTGGGAATTTTCATATGCTGAAGCACATTTCATTGGGTTGGATTGCTCTGCCGGTTTCCGTTCAAGAAACTCTGTTAGCACAATGTAGGTTGCTTGAGAGTCTGAGTCTGAAGAAATGTTGGGGGATGAACTCCCTTGACGTTCGTGGGAATGACTTAAAGCTAAAAACTTTGGTGGCTGATAGGTGCAGTATTCGTTACCCTCATTCCTTTTATCTTGAAGCACCAAAGTTGAATTATTTGAAGTTTGTTGGTGGGGATGTGCCGGCATTGACTACAGGCGAGGGTAGCGAATTCAATTTCTTCGAAGAGTTGAACCTCGACTTGAGCCCTGTGATAGATTTTCATGGCTCTGCTAGTCCCAATTCTATTCTCGATATACTTCCTCGTAGCCTTGTGATAGATTTTCATAGCTTTGCTAGTCCTAATTCCATTCTTGATATACTTCCTCCTACAAGGAAGTTACGTTCTTACACGCTTCGGATACACATTTCTCTCTTCAACGTTTCATTGTTTGCACTAGTAATGTGGCTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

318

Amino Acids

36.22

Weight (kDa)

5.86

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	110 - 219	1.9e-07	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56400 AT1G56400 AT2G17305 AT3G29830 AT3G29830 AT3G62230 AT5G54820
fragaria_vesca	FvH4_7g19741
malus_domestica	MD03G1208600.v1.1 MD11G1222600.v1.1 MD11G1222800.v1.1 MD11G1223200.v1.1
prunus_persica	Prupe.4G208100_v2.0.a1 Prupe.4G208200_v2.0.a1 Prupe.4G208300_v2.0.a1
pyrus_communis	pycom03g15720 pycom03g15760 pycom11g19660
rosa_chinensis	RchiOBHm_Chr1g0363631 RchiOBHm_Chr7g0214121
rosa_laevigata	RLG00000008357 RLG00000027555
rosa_multiflora	Rmu_sc0000548.1_g000010 Rmu_sc0000675.1_g000034
rosa_roxburghii	Rroxscaffold_4G00293030
rosa_rugosa	Rorug01G0308300
rosa_samantha	Rh1AG089100 Rh1AG317200 Rh1BG280600 Rh1CG296700 Rh1DG311800 Rh4AG168100 Rh4BG165000
rosa_wichuraiana	Rw1G006910 Rw1G028130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	96
AciI	CCGC	4 cut(s)	69, 173, 294, 407
AclI	AACGTT	1 cut(s)	918
AcsI	RAATTY	2 cut(s)	421, 707
AcuI	CTGAAG	2 cut(s)	455, 545
AcyI	GRCGYC	1 cut(s)	100
AfiI	CCNNNNNNNGG	2 cut(s)	96, 298
AgsI	TTSAA	9 cut(s)	61, 136, 479, 635, 649, 658, 712, 730, 916
AhlI	ACTAGT	1 cut(s)	934
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AloI	GAACNNNNNNTCC	2 cut(s)	865, 897
AluBI	AGCT	4 cut(s)	94, 383, 577, 828
AluI	AGCT	4 cut(s)	94, 383, 577, 828
Alw26I	GTCTC	1 cut(s)	184
Ama87I	CYCGRG	1 cut(s)	308
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	2 cut(s)	421, 707
AspLEI	GCGC	2 cut(s)	216, 277
AsuHPI	GGTGA	1 cut(s)	353
AsuII	TTCGAA	1 cut(s)	720
AvaI	CYCGRG	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	746
BauI	CACGAG	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	176
BceAI	ACGGC	1 cut(s)	201
BciVI	GTATCC	1 cut(s)	891
BclI	TGATCA	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	184
BcuI	ACTAGT	1 cut(s)	934
BfaI	CTAG	4 cut(s)	380, 771, 834, 935
BfmI	CTRYAG	1 cut(s)	690
BfoI	RGCGCY	1 cut(s)	278
BfuI	GTATCC	1 cut(s)	891
BisI	GCNGC	2 cut(s)	69, 165
BlsI	GCNGC	2 cut(s)	70, 166
BmeT110I	CYCGRG	1 cut(s)	308
BmsI	GCATC	1 cut(s)	394
Bpu14I	TTCGAA	1 cut(s)	720
BpuEI	CTTGAG	3 cut(s)	392, 530, 760
BsaBI	GATNNNNATC	1 cut(s)	41
BsaHI	GRCGYC	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	106
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 298
Bse118I	RCCGGY	3 cut(s)	169, 466, 679
Bse8I	GATNNNNATC	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	4 cut(s)	307, 355, 546, 679
BseJI	GATNNNNATC	1 cut(s)	41
BseLI	CCNNNNNNNGG	2 cut(s)	96, 298
BseMII	CTCAG	1 cut(s)	509
BseXI	GCAGC	1 cut(s)	176
BsgI	GTGCAG	1 cut(s)	622
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	3 cut(s)	170, 467, 680
BslFI	GGGAC	2 cut(s)	361, 759
BslI	CCNNNNNNNGG	2 cut(s)	96, 298
BsmAI	GTCTC	1 cut(s)	184
BsmFI	GGGAC	2 cut(s)	361, 759
BsoBI	CYCGRG	1 cut(s)	308
Bsp119I	TTCGAA	1 cut(s)	720
Bsp1286I	GDGCHC	1 cut(s)	746
Bsp143I	GATC	1 cut(s)	36
BspACI	CCGC	4 cut(s)	69, 173, 294, 407
BspCNI	CTCAG	1 cut(s)	510
BspT104I	TTCGAA	1 cut(s)	720
BsrFI	RCCGGY	3 cut(s)	169, 466, 679
BssAI	RCCGGY	3 cut(s)	169, 466, 679
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	36
BssNI	GRCGYC	1 cut(s)	100
BssSI	CACGAG	1 cut(s)	323
BssT1I	CCWWGG	1 cut(s)	106
Bst2BI	CACGAG	1 cut(s)	323
Bst4CI	ACNGT	2 cut(s)	18, 270
Bst6I	CTCTTC	2 cut(s)	717, 917
BstACI	GRCGYC	1 cut(s)	100
BstBI	TTCGAA	1 cut(s)	720
BstC8I	GCNNGC	1 cut(s)	681
BstDEI	CTNAG	1 cut(s)	518
BstF5I	GGATG	4 cut(s)	307, 355, 546, 679
BstH2I	RGCGCY	1 cut(s)	278
BstHHI	GCGC	2 cut(s)	216, 277
BstKTI	GATC	1 cut(s)	39
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 179, 702
BstSFI	CTRYAG	1 cut(s)	690
BstV1I	GCAGC	1 cut(s)	176
BsuI	GTATCC	1 cut(s)	891
BtgZI	GCGATG	1 cut(s)	28
BtsCI	GGATG	4 cut(s)	307, 355, 546, 679
Cac8I	GCNNGC	1 cut(s)	681
CfoI	GCGC	2 cut(s)	216, 277
Cfr10I	RCCGGY	3 cut(s)	169, 466, 679
CseI	GACGC	2 cut(s)	89, 170
CviAII	CATG	3 cut(s)	257, 297, 761
DdeI	CTNAG	1 cut(s)	518
DpnI	GATC	1 cut(s)	38
DpnII	GATC	1 cut(s)	36
Eam1104I	CTCTTC	2 cut(s)	717, 917
EarI	CTCTTC	2 cut(s)	717, 917
EciI	GGCGGA	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	106
Eco24I	GRGCYC	1 cut(s)	746
Eco57I	CTGAAG	2 cut(s)	455, 545
Eco88I	CYCGRG	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	707
EcoT14I	CCWWGG	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	746
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	3 cut(s)	260, 300, 764
FaqI	GGGAC	2 cut(s)	361, 759
FatI	CATG	3 cut(s)	256, 296, 760
FauI	CCCGC	1 cut(s)	301
FauNDI	CATATG	1 cut(s)	429
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	2 cut(s)	69, 165
FokI	GGATG	4 cut(s)	314, 362, 553, 686
FriOI	GRGCYC	1 cut(s)	746
Fsp4HI	GCNGC	2 cut(s)	69, 165
FspBI	CTAG	4 cut(s)	380, 771, 834, 935
GlaI	GCGC	2 cut(s)	215, 276
GluI	GCNGC	2 cut(s)	69, 165
HaeII	RGCGCY	1 cut(s)	278
HapII	CCGG	3 cut(s)	170, 467, 680
HgaI	GACGC	2 cut(s)	89, 170
HhaI	GCGC	2 cut(s)	216, 277
Hin1I	GRCGYC	1 cut(s)	100
Hin1II	CATG	3 cut(s)	260, 300, 764
Hin6I	GCGC	2 cut(s)	214, 275
HinP1I	GCGC	2 cut(s)	214, 275
HinfI	GANTC	5 cut(s)	184, 326, 374, 514, 520
HpaII	CCGG	3 cut(s)	170, 467, 680
HphI	GGTGA	1 cut(s)	353
Hpy188I	TCNGA	5 cut(s)	189, 289, 519, 525, 897
Hpy188III	TCNNGA	6 cut(s)	34, 371, 479, 632, 788, 851
Hpy99I	CGWCG	2 cut(s)	105, 131
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	2 cut(s)	18, 270
HpyCH4IV	ACGT	3 cut(s)	555, 880, 918
HpyCH4V	TGCA	3 cut(s)	396, 603, 932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 179, 702
HpyF3I	CTNAG	1 cut(s)	518
HpySE526I	ACGT	3 cut(s)	555, 880, 918
Hsp92I	GRCGYC	1 cut(s)	100
Hsp92II	CATG	3 cut(s)	260, 300, 764
HspAI	GCGC	2 cut(s)	214, 275
KroI	GCCGGC	1 cut(s)	679
KroNI	GCCGGC	1 cut(s)	681
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	1 cut(s)	36
LpnPI	CCDG	8 cut(s)	47, 183, 258, 480, 678, 693, 759, 932
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	4 cut(s)	380, 771, 834, 935
MaeII	ACGT	3 cut(s)	555, 880, 918
MaeIII	GTNAC	3 cut(s)	18, 611, 876
MalI	GATC	1 cut(s)	38
MboI	GATC	1 cut(s)	36
MboII	GAAGA	4 cut(s)	538, 709, 734, 904
MhlI	GDGCHC	1 cut(s)	746
MluCI	AATT	7 cut(s)	397, 421, 649, 707, 712, 778, 841
MlyI	GAGTC	4 cut(s)	335, 383, 523, 529
MmeI	TCCRAC	2 cut(s)	200, 434
MnlI	CCTC	6 cut(s)	39, 627, 691, 743, 810, 873
MroNI	GCCGGC	1 cut(s)	679
MseI	TTAA	1 cut(s)	572
MspI	CCGG	3 cut(s)	170, 467, 680
MwoI	GCNNNNNNNGC	3 cut(s)	170, 179, 702
NaeI	GCCGGC	1 cut(s)	681
NdeI	CATATG	1 cut(s)	429
NdeII	GATC	1 cut(s)	36
NgoMIV	GCCGGC	1 cut(s)	679
NlaIII	CATG	3 cut(s)	260, 300, 764
NspV	TTCGAA	1 cut(s)	720
PcsI	WCGNNNNNNNCGW	2 cut(s)	109, 135
PdiI	GCCGGC	1 cut(s)	681
PfeI	GAWTC	1 cut(s)	184
PflMI	CCANNNNNTGG	1 cut(s)	96
PkrI	GCNGC	2 cut(s)	70, 166
PleI	GAGTC	4 cut(s)	334, 382, 522, 528
PpsI	GAGTC	4 cut(s)	334, 382, 522, 528
Psp1406I	AACGTT	1 cut(s)	918
SaqAI	TTAA	1 cut(s)	572
SatI	GCNGC	2 cut(s)	69, 165
Sau3AI	GATC	1 cut(s)	36
SchI	GAGTC	4 cut(s)	335, 383, 523, 529
SduI	GDGCHC	1 cut(s)	746
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	1 cut(s)	690
SfuI	TTCGAA	1 cut(s)	720
SgrAI	CRCCGGYG	1 cut(s)	169
SmlI	CTYRAG	3 cut(s)	371, 509, 739
SmoI	CTYRAG	3 cut(s)	371, 509, 739
SpeI	ACTAGT	1 cut(s)	934
Sse9I	AATT	7 cut(s)	397, 421, 649, 707, 712, 778, 841
SsiI	CCGC	4 cut(s)	69, 173, 294, 407
SspMI	CTAG	4 cut(s)	380, 771, 834, 935
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	2 cut(s)	18, 270
TaiI	ACGT	3 cut(s)	558, 883, 921
TaqI	TCGA	6 cut(s)	116, 129, 279, 720, 735, 789
TasI	AATT	7 cut(s)	397, 421, 649, 707, 712, 778, 841
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	1 cut(s)	572
Tru9I	TTAA	1 cut(s)	572
TseI	GCWGC	1 cut(s)	164
TspDTI	ATGAA	8 cut(s)	190, 318, 416, 435, 557, 749, 812, 912
TspGWI	ACGGA	1 cut(s)	463
Van91I	CCANNNNNTGG	1 cut(s)	96
XapI	RAATTY	2 cut(s)	421, 707
XspI	CTAG	4 cut(s)	380, 771, 834, 935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.