Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003556

Physical Location & Seq

Genomic Coordinates Forward (+)

14301377 .. 14302749

Gene Structure 1373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G006910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGGCATGATCTCACATTTTCCTGATAATGTTCTTGTAACTATCATTTCCTTCCTGGCATTCAAGAGGTGGCTAGAACTTCGGTTTTCGCAAGGAGATGGTAGAACATATGGCCTTTTCTTCTCCTACATTAGTAAAGATGAAGATGATGCTAGGAGAATAGCTTTCGTCAACTTTTTGAAGAACTGGATCGATAACTGTCAACCTACGGTTTTGGACAGAGTTTGTTGTATCAGATTTGCTATTACTCATGAAGTTATGGCTCTAGGGCTTGATTTCTCTTATCCATCATGGGGTGATGATGTTTTACTTGGCAATAGTCCTAAACCTTCATTTGTCCTGCCTCAAGTTGTTTATCAACATGGGGTTCTTGAATCTCTAACCCTCTTTTCTTGCAAGTTCAATGTGGCCGAGATAATTTTTCATCTCTTGAAGCATCTTTCACTTGATTGGATTGAACTGCCTCTACCTTCACTCACTACGTTGTTAGACTATTGTCAATTGCTCGAAAGCCTGAGTCTAAAGAACTGCTGGAACATCACTGGCCTTCAAATTGGTGGAAAAAAGTTGAGGCTAAGAAGCTTAGTTATTGACAAGTTCATCACGTCCGAGAATCCTTGGATTGAAATCGAAGCATCAAATTTGAAGTACTTTAAGTATTCAGGGACTATGGCTGTATTCGACATCCGAACAGGAGAGTTGGAAGAGGCATACCTTGAGGATCGCCTCTATCAACTCCTCCACCAACTTCCCATTAGGATGCTCACAATTTGCCAATACATGCTTCAGGTTCTTCCATCAGAACTGGAATCTAATGGTGTAACTCCTTTATTTGGTTTTCTGCACTTAAATCTGAGGACTGCAATGCTTAGTTGTGAGCAGAAAGGGATCAAATATCTCCTCAGAAGTGAACCAGATGACAGAGATGATGTATGGACACCAAATTCACCGGATTACCATTGTGTAAGCAAACACTGTGTGATTCAGCTGAGAGGGTACAAAGGTTCAAGACATGAAGTTAGCTTTCTGAAGTATCTTTATTGCCATGGCCATGTTCTCGGACAACTTCATATTCTTATCGCCGAGGAGCTTCAGAATCAGAGGAGTGTGGCTGAAAATCGGCGACTTGTGATGAAGACATTTCAAGGTTTGAGAAGAGCCTCGGATAATCTCCGTATAAATCTTTATGGTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

398

Amino Acids

46.08

Weight (kDa)

6.89

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	103 - 194	3e-07	FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1	PF23622	123 - 255	2.7e-08	At1g61320/AtMIF1, LRR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56400 AT1G56400 AT2G17305 AT3G29830 AT3G29830 AT3G62230 AT5G54820
fragaria_vesca	FvH4_7g19741
malus_domestica	MD03G1208600.v1.1 MD11G1222600.v1.1 MD11G1222800.v1.1 MD11G1223200.v1.1
prunus_persica	Prupe.4G208100_v2.0.a1 Prupe.4G208200_v2.0.a1 Prupe.4G208300_v2.0.a1
pyrus_communis	pycom03g15720 pycom03g15760 pycom11g19660
rosa_chinensis	RchiOBHm_Chr1g0363631 RchiOBHm_Chr7g0214121
rosa_laevigata	RLG00000008357 RLG00000027555
rosa_multiflora	Rmu_sc0000548.1_g000010 Rmu_sc0000675.1_g000034
rosa_roxburghii	Rroxscaffold_4G00293030
rosa_rugosa	Rorug01G0308300
rosa_samantha	Rh1AG089100 Rh1AG317200 Rh1BG280600 Rh1CG296700 Rh1DG311800 Rh4AG168100 Rh4BG165000
rosa_wichuraiana	Rw1G006910 Rw1G028130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	197, 729, 896
AcoI	YGGCCR	2 cut(s)	408, 1048
AcsI	RAATTY	2 cut(s)	640, 943
AcuI	CTGAAG	3 cut(s)	770, 1049, 1076
AdeI	CACNNNGTG	1 cut(s)	979
AfaI	GTAC	2 cut(s)	650, 998
AfiI	CCNNNNNNNGG	2 cut(s)	293, 833
AjiI	CACGTC	1 cut(s)	606
AjnI	CCWGG	1 cut(s)	54
AjuI	GAANNNNNNNTTGG	2 cut(s)	768, 800
AluBI	AGCT	5 cut(s)	164, 582, 988, 1023, 1090
AluI	AGCT	5 cut(s)	164, 582, 988, 1023, 1090
AlwI	GGATC	3 cut(s)	197, 729, 896
AoxI	GGCC	4 cut(s)	112, 408, 544, 1048
ApoI	RAATTY	2 cut(s)	640, 943
AsuHPI	GGTGA	2 cut(s)	308, 939
BaeI	ACNNNNGTAYC	2 cut(s)	988, 1021
BalI	TGGCCA	1 cut(s)	1050
BbsI	GAAGAC	1 cut(s)	1142
BccI	CCATC	3 cut(s)	92, 295, 805
BciT130I	CCWGG	1 cut(s)	56
BfaI	CTAG	3 cut(s)	74, 153, 266
BmcAI	AGTACT	1 cut(s)	650
Bme1390I	CCNGG	1 cut(s)	56
BmgBI	CACGTC	1 cut(s)	606
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	4 cut(s)	139, 445, 644, 750
BoxI	GACNNNNGTC	1 cut(s)	495
BpiI	GAAGAC	1 cut(s)	1142
BpuEI	CTTGAG	2 cut(s)	330, 737
Bsa29I	ATCGAT	1 cut(s)	192
BsaBI	GATNNNNATC	1 cut(s)	626
BsaJI	CCNNGG	4 cut(s)	617, 1045, 1083, 1161
BsaWI	WCCGGW	1 cut(s)	949
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 833
Bse1I	ACTGG	3 cut(s)	191, 547, 810
Bse3DI	GCAATG	1 cut(s)	870
Bse8I	GATNNNNATC	1 cut(s)	626
BseBI	CCWGG	1 cut(s)	56
BseCI	ATCGAT	1 cut(s)	192
BseDI	CCNNGG	4 cut(s)	617, 1045, 1083, 1161
BseGI	GGATG	2 cut(s)	684, 765
BseJI	GATNNNNATC	1 cut(s)	626
BseLI	CCNNNNNNNGG	2 cut(s)	293, 833
BseMI	GCAATG	1 cut(s)	870
BseMII	CTCAG	4 cut(s)	506, 845, 916, 980
BseNI	ACTGG	3 cut(s)	191, 547, 810
BseRI	GAGGAG	4 cut(s)	728, 890, 1100, 1117
BsgI	GTGCAG	1 cut(s)	827
BshFI	GGCC	4 cut(s)	114, 410, 546, 1050
BshVI	ATCGAT	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	950
BslFI	GGGAC	1 cut(s)	679
BslI	CCNNNNNNNGG	2 cut(s)	293, 833
BsmFI	GGGAC	1 cut(s)	679
BsmI	GAATGC	1 cut(s)	59
BsnI	GGCC	4 cut(s)	114, 410, 546, 1050
Bsp143I	GATC	4 cut(s)	9, 189, 721, 888
Bsp19I	CCATGG	1 cut(s)	1045
BspANI	GGCC	4 cut(s)	114, 410, 546, 1050
BspCNI	CTCAG	4 cut(s)	507, 846, 915, 981
BspDI	ATCGAT	1 cut(s)	192
BspHI	TCATGA	1 cut(s)	250
BspPI	GGATC	3 cut(s)	197, 729, 896
BspQI	GCTCTTC	1 cut(s)	1150
BsrDI	GCAATG	1 cut(s)	870
BsrI	ACTGG	3 cut(s)	191, 547, 810
BssECI	CCNNGG	4 cut(s)	617, 1045, 1083, 1161
BssMI	GATC	4 cut(s)	9, 189, 721, 888
BssT1I	CCWWGG	2 cut(s)	617, 1045
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	3 cut(s)	200, 211, 977
Bst6I	CTCTTC	2 cut(s)	699, 1150
BstDEI	CTNAG	7 cut(s)	515, 575, 583, 854, 869, 902, 989
BstDSI	CCRYGG	1 cut(s)	1045
BstF5I	GGATG	2 cut(s)	684, 765
BstKTI	GATC	4 cut(s)	12, 192, 724, 891
BstMBI	GATC	4 cut(s)	9, 189, 721, 888
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	784
BstPAI	GACNNNNGTC	1 cut(s)	495
BstSCI	CCNGG	1 cut(s)	54
BstV2I	GAAGAC	1 cut(s)	1142
Bsu15I	ATCGAT	1 cut(s)	192
BsuRI	GGCC	4 cut(s)	114, 410, 546, 1050
BsuTUI	ATCGAT	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	1045
BtrI	CACGTC	1 cut(s)	606
BtsCI	GGATG	2 cut(s)	684, 765
BtsIMutI	CAGTG	2 cut(s)	540, 973
CciI	TCATGA	1 cut(s)	250
ClaI	ATCGAT	1 cut(s)	192
Csp6I	GTAC	2 cut(s)	649, 997
CviAII	CATG	8 cut(s)	7, 251, 291, 362, 781, 1013, 1046, 1052
CviQI	GTAC	2 cut(s)	649, 997
DdeI	CTNAG	7 cut(s)	515, 575, 583, 854, 869, 902, 989
DpnI	GATC	4 cut(s)	11, 191, 723, 890
DpnII	GATC	4 cut(s)	9, 189, 721, 888
DraIII	CACNNNGTG	1 cut(s)	979
EaeI	YGGCCR	2 cut(s)	408, 1048
Eam1104I	CTCTTC	2 cut(s)	699, 1150
EarI	CTCTTC	2 cut(s)	699, 1150
Eco130I	CCWWGG	2 cut(s)	617, 1045
Eco57I	CTGAAG	3 cut(s)	770, 1049, 1076
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	2 cut(s)	617, 1045
ErhI	CCWWGG	2 cut(s)	617, 1045
FaeI	CATG	8 cut(s)	10, 254, 294, 365, 784, 1016, 1049, 1055
FaqI	GGGAC	1 cut(s)	679
FatI	CATG	8 cut(s)	6, 250, 290, 361, 780, 1012, 1045, 1051
FauNDI	CATATG	1 cut(s)	109
FokI	GGATG	2 cut(s)	671, 772
FspBI	CTAG	3 cut(s)	74, 153, 266
HaeIII	GGCC	4 cut(s)	114, 410, 546, 1050
HapII	CCGG	1 cut(s)	950
Hin1II	CATG	8 cut(s)	10, 254, 294, 365, 784, 1016, 1049, 1055
HincII	GTYRAC	2 cut(s)	172, 203
HindII	GTYRAC	2 cut(s)	172, 203
HindIII	AAGCTT	1 cut(s)	580
HinfI	GANTC	6 cut(s)	374, 517, 613, 809, 982, 1096
HpaII	CCGG	1 cut(s)	950
HphI	GGTGA	2 cut(s)	308, 939
Hpy166II	GTNNAC	3 cut(s)	172, 203, 911
Hpy188III	TCNNGA	6 cut(s)	23, 64, 251, 371, 430, 1008
Hpy8I	GTNNAC	3 cut(s)	172, 203, 911
HpyAV	CCTTC	4 cut(s)	61, 339, 480, 557
HpyCH4III	ACNGT	3 cut(s)	200, 211, 977
HpyCH4IV	ACGT	2 cut(s)	482, 605
HpyCH4V	TGCA	3 cut(s)	396, 844, 863
HpyF3I	CTNAG	7 cut(s)	515, 575, 583, 854, 869, 902, 989
HpySE526I	ACGT	2 cut(s)	482, 605
Hsp92II	CATG	8 cut(s)	10, 254, 294, 365, 784, 1016, 1049, 1055
Kzo9I	GATC	4 cut(s)	9, 189, 721, 888
LguI	GCTCTTC	1 cut(s)	1150
LmnI	GCTCC	1 cut(s)	1087
LweI	GCATC	4 cut(s)	139, 445, 644, 750
MaeI	CTAG	3 cut(s)	74, 153, 266
MaeII	ACGT	2 cut(s)	482, 605
MaeIII	GTNAC	2 cut(s)	37, 820
MalI	GATC	4 cut(s)	11, 191, 723, 890
MboI	GATC	4 cut(s)	9, 189, 721, 888
MboII	GAAGA	7 cut(s)	112, 155, 193, 716, 785, 1147, 1167
MfeI	CAATTG	1 cut(s)	500
MlsI	TGGCCA	1 cut(s)	1050
MluCI	AATT	6 cut(s)	417, 500, 552, 640, 768, 943
MluNI	TGGCCA	1 cut(s)	1050
MlyI	GAGTC	1 cut(s)	526
MmeI	TCCRAC	1 cut(s)	681
Mox20I	TGGCCA	1 cut(s)	1050
MscI	TGGCCA	1 cut(s)	1050
MseI	TTAA	2 cut(s)	654, 848
MslI	CAYNNNNRTG	2 cut(s)	758, 1050
Msp20I	TGGCCA	1 cut(s)	1050
MspA1I	CMGCKG	1 cut(s)	988
MspI	CCGG	1 cut(s)	950
MspR9I	CCNGG	1 cut(s)	56
MunI	CAATTG	1 cut(s)	500
Mva1269I	GAATGC	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	1045
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	4 cut(s)	9, 189, 721, 888
NlaIII	CATG	8 cut(s)	10, 254, 294, 365, 784, 1016, 1049, 1055
NmeAIII	GCCGAG	2 cut(s)	436, 1108
NspI	RCATGY	1 cut(s)	784
PagI	TCATGA	1 cut(s)	250
PciSI	GCTCTTC	1 cut(s)	1150
PctI	GAATGC	1 cut(s)	59
PfeI	GAWTC	5 cut(s)	374, 613, 809, 982, 1096
PleI	GAGTC	1 cut(s)	525
PpsI	GAGTC	1 cut(s)	525
PshAI	GACNNNNGTC	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PsrI	GAACNNNNNNTAC	2 cut(s)	450, 482
PvuII	CAGCTG	1 cut(s)	988
RsaI	GTAC	2 cut(s)	650, 998
RsaNI	GTAC	2 cut(s)	649, 997
RseI	CAYNNNNRTG	2 cut(s)	758, 1050
SapI	GCTCTTC	1 cut(s)	1150
SaqAI	TTAA	2 cut(s)	654, 848
Sau3AI	GATC	4 cut(s)	9, 189, 721, 888
ScaI	AGTACT	1 cut(s)	650
SchI	GAGTC	1 cut(s)	526
ScrFI	CCNGG	1 cut(s)	56
SfaNI	GCATC	4 cut(s)	139, 445, 644, 750
SmiMI	CAYNNNNRTG	2 cut(s)	758, 1050
SmlI	CTYRAG	2 cut(s)	345, 716
SmoI	CTYRAG	2 cut(s)	345, 716
Sse9I	AATT	6 cut(s)	417, 500, 552, 640, 768, 943
SspMI	CTAG	3 cut(s)	74, 153, 266
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	2 cut(s)	617, 1045
TaaI	ACNGT	3 cut(s)	200, 211, 977
TaiI	ACGT	2 cut(s)	485, 608
TaqI	TCGA	4 cut(s)	192, 507, 630, 681
TasI	AATT	6 cut(s)	417, 500, 552, 640, 768, 943
TatI	WGTACW	1 cut(s)	648
TfiI	GAWTC	5 cut(s)	374, 613, 809, 982, 1096
Tru1I	TTAA	2 cut(s)	654, 848
Tru9I	TTAA	2 cut(s)	654, 848
TscAI	CASTG	2 cut(s)	547, 980
TspDTI	ATGAA	8 cut(s)	156, 267, 321, 413, 589, 1029, 1058, 1148
TspGWI	ACGGA	1 cut(s)	1163
TspRI	CASTG	2 cut(s)	547, 980
XapI	RAATTY	2 cut(s)	640, 943
XceI	RCATGY	1 cut(s)	784
XspI	CTAG	3 cut(s)	74, 153, 266
ZrmI	AGTACT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.