Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003556

Physical Location & Seq

Genomic Coordinates Forward (+)

11737049 .. 11738847

Gene Structure 1799 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G29830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGGATTCAGTCAACCAACGAGACAGAATATCAAGTCTACCAGATGTAGTTCTAGTTATGATCCTCTCTTTCTTGTCCTTCAAGGATAATGTAAAGACGAGCATTCTCTCAAAGCGTTGGAGGAATATTTGCTATGAAGCAAAGAACATTTCCTTTAAGGAATCAGAGTATGTGGACATCTCTGTGTTTGACTATGTCTCCAAACGGGTATCATTTGTTCGGTATATGCTCAACTGGGTCTCTAGAGTTCCCATTAAGGTTATCGAAAGTTTTGAAATTTGTCTCGGTTTTCCGGTGGGCTTCGAGGTAGAGATCAAGTCATTGATTGAGTTTTCCATCTCTAGACAAGTAAAGAAGTTAGTTCTTGATTTCTCAAGCCCTTTTTGGGATAACACATGGGATGGGTTGAGAAATGATGACTTTGTTATTGAATTGCCCGCACTCATTTACGGTCTACAAACCCTCGAATCATTGACGATTTACGCATGCATGTTTGACCCTTCGAGATTCACAAACGTAGGACTAAGAACGCTCTCTATTGGTTGGTTTAGACTTGAAAAGATCGAATCTTTGTTATCAAAGTTTCCTTTGCTTGAGAGTCTGAGTATTATCTCTTGTTACCTTGATGAGGTTAAGTTAGCTGGGCAAATTAGAGTCAGAGAACTGATCATCGATAACTGCATTATCCCTACCATGTATTGTTTGTTAAACCTACCTAACATAGAAATCTTCAAGTACTCCGGAAATGTCATCGTCTTCGATTTTCAGAAAGTGAATATGATATTGTTGAAAGAGGTTTACTTAGATTTTTTTATAGAGCATGAAAATGACGAACCAACCTATTCACCTAAAGAAGCTGGAGATATTCTTTCCCATCTTCTTAATGATCTTCGATCTTCTAGGACTTTGACCGTCTGCTCTTATCTCCTTGAGGTGATTTCAGAATGTAACGATCCGGTTGATATGCTTCGTGATGTCCAAGCACAACATTTGGTGCTAGAAACCCTCATGCATCCGAACGAGTTTACGGGTATGAGGCTCCTTCTTGATCATTGCCCGAACTTAGAGACCCTCACGTTCCAGCTTCTTTGTCTAAAACCTTTCCCTATGGCTTCACATGGTGGCTCCAGTTCACATACATTATGGCTGGAAAACATCTCATCAAGGTGTTTGAGAAGGACTCTCAAGATCCTTGTGGTTAGGGGTTTTTGTAATAGCTGGAACGAGTTCTATTTATTGAACTATTTGGTTCTGCCGGAGCATGGGTTTGCATTGGAAAGAGTTGAACTTTACTTGCCTCCGTTGCAAGAAATGCCAAGGCAGTGGGCCTATCATGGAGCCGCGATGTTACAAAAAACTTCAAATCGAGTACAAGTTATTTTGCACAGCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

464

Amino Acids

53.8

Weight (kDa)

5.58

Isoelectric Point (pI)

53.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	10 - 44	1.7e-08	F-box domain
F-box-like	PF12937	10 - 45	1.2e-06	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56400 AT1G56400 AT2G17305 AT3G29830 AT3G29830 AT3G62230 AT5G54820
fragaria_vesca	FvH4_7g19741
malus_domestica	MD03G1208600.v1.1 MD11G1222600.v1.1 MD11G1222800.v1.1 MD11G1223200.v1.1
prunus_persica	Prupe.4G208100_v2.0.a1 Prupe.4G208200_v2.0.a1 Prupe.4G208300_v2.0.a1
pyrus_communis	pycom03g15720 pycom03g15760 pycom11g19660
rosa_chinensis	RchiOBHm_Chr1g0363631 RchiOBHm_Chr7g0214121
rosa_laevigata	RLG00000008357 RLG00000027555
rosa_multiflora	Rmu_sc0000548.1_g000010 Rmu_sc0000675.1_g000034
rosa_roxburghii	Rroxscaffold_4G00293030
rosa_rugosa	Rorug01G0308300
rosa_samantha	Rh1AG089100 Rh1AG317200 Rh1BG280600 Rh1CG296700 Rh1DG311800 Rh4AG168100 Rh4BG165000
rosa_wichuraiana	Rw1G006910 Rw1G028130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	37, 454
AccII	CGCG	1 cut(s)	1343
AccIII	TCCGGA	1 cut(s)	740
AciI	CCGC	2 cut(s)	438, 1341
AclWI	GGATC	3 cut(s)	55, 947, 1183
AcsI	RAATTY	1 cut(s)	276
AdeI	CACNNNGTG	1 cut(s)	1121
AfaI	GTAC	2 cut(s)	737, 1371
AfeI	AGCGCT	1 cut(s)	1390
AfiI	CCNNNNNNNGG	3 cut(s)	385, 628, 1262
AgsI	TTSAA	9 cut(s)	82, 275, 431, 557, 733, 790, 1240, 1286, 1362
AluBI	AGCT	4 cut(s)	641, 857, 1084, 1218
AluI	AGCT	4 cut(s)	641, 857, 1084, 1218
Alw26I	GTCTC	5 cut(s)	15, 202, 244, 287, 1061
AlwI	GGATC	3 cut(s)	55, 947, 1183
Aor13HI	TCCGGA	1 cut(s)	740
Aor51HI	AGCGCT	1 cut(s)	1390
AoxI	GGCC	1 cut(s)	1326
ApoI	RAATTY	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	1226
AspLEI	GCGC	1 cut(s)	1391
AspS9I	GGNCC	1 cut(s)	1326
AsuHPI	GGTGA	2 cut(s)	837, 946
BbsI	GAAGAC	1 cut(s)	748
BccI	CCATC	3 cut(s)	344, 395, 882
BclI	TGATCA	2 cut(s)	666, 1048
BcoDI	GTCTC	5 cut(s)	15, 202, 244, 287, 1061
BfaI	CTAG	5 cut(s)	53, 243, 342, 900, 998
BfoI	RGCGCY	1 cut(s)	1392
BisI	GCNGC	1 cut(s)	1341
BlsI	GCNGC	1 cut(s)	1342
BmcAI	AGTACT	1 cut(s)	737
BmgT120I	GGNCC	1 cut(s)	1326
BmiI	GGNNCC	3 cut(s)	1040, 1126, 1339
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	1 cut(s)	1021
BmuI	ACTGGG	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	748
BplI	GAGNNNNNCTC	2 cut(s)	1165, 1197
BpmI	CTGGAG	2 cut(s)	879, 1111
BpuEI	CTTGAG	4 cut(s)	358, 614, 950, 1169
Bsa29I	ATCGAT	1 cut(s)	672
BsaI	GGTCTC	2 cut(s)	244, 1061
BsaJI	CCNNGG	1 cut(s)	1316
BsaWI	WCCGGW	3 cut(s)	292, 740, 955
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 1250, 1280
Bsc4I	CCNNNNNNNGG	3 cut(s)	385, 628, 1262
Bse1I	ACTGG	2 cut(s)	239, 1128
Bse3DI	GCAATG	1 cut(s)	1051
BseAI	TCCGGA	1 cut(s)	740
BseCI	ATCGAT	1 cut(s)	672
BseDI	CCNNGG	1 cut(s)	1316
BseGI	GGATG	2 cut(s)	406, 1012
BseLI	CCNNNNNNNGG	3 cut(s)	385, 628, 1262
BseMI	GCAATG	1 cut(s)	1051
BseMII	CTCAG	1 cut(s)	593
BseNI	ACTGG	2 cut(s)	239, 1128
BseYI	CCCAGC	1 cut(s)	641
Bsh1236I	CGCG	1 cut(s)	1343
BshFI	GGCC	1 cut(s)	1328
BshVI	ATCGAT	1 cut(s)	672
BsiSI	CCGG	4 cut(s)	293, 741, 956, 1256
BslI	CCNNNNNNNGG	3 cut(s)	385, 628, 1262
BsmAI	GTCTC	5 cut(s)	15, 202, 244, 287, 1061
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	1328
Bso31I	GGTCTC	2 cut(s)	244, 1061
Bsp13I	TCCGGA	1 cut(s)	740
Bsp143I	GATC	9 cut(s)	60, 312, 561, 666, 886, 893, 952, 1048, 1188
BspACI	CCGC	2 cut(s)	438, 1341
BspANI	GGCC	1 cut(s)	1328
BspCNI	CTCAG	1 cut(s)	594
BspDI	ATCGAT	1 cut(s)	672
BspEI	TCCGGA	1 cut(s)	740
BspFNI	CGCG	1 cut(s)	1343
BspLI	GGNNCC	3 cut(s)	1040, 1126, 1339
BspPI	GGATC	3 cut(s)	55, 947, 1183
BspTNI	GGTCTC	2 cut(s)	244, 1061
BsrDI	GCAATG	1 cut(s)	1051
BsrI	ACTGG	2 cut(s)	239, 1128
BssECI	CCNNGG	1 cut(s)	1316
BssMI	GATC	9 cut(s)	60, 312, 561, 666, 886, 893, 952, 1048, 1188
BssT1I	CCWWGG	1 cut(s)	1316
Bst4CI	ACNGT	2 cut(s)	452, 913
BstAPI	GCANNNNNTGC	1 cut(s)	1312
BstC8I	GCNNGC	2 cut(s)	438, 487
BstDEI	CTNAG	4 cut(s)	524, 602, 802, 1063
BstENI	CCTNNNNNAGG	1 cut(s)	626
BstF5I	GGATG	2 cut(s)	406, 1012
BstFNI	CGCG	1 cut(s)	1343
BstH2I	RGCGCY	1 cut(s)	1392
BstHHI	GCGC	1 cut(s)	1391
BstKTI	GATC	9 cut(s)	63, 315, 564, 669, 889, 896, 955, 1051, 1191
BstMAI	GTCTC	5 cut(s)	15, 202, 244, 287, 1061
BstMBI	GATC	9 cut(s)	60, 312, 561, 666, 886, 893, 952, 1048, 1188
BstMWI	GCNNNNNNNGC	2 cut(s)	1303, 1312
BstNSI	RCATGY	2 cut(s)	489, 493
BstUI	CGCG	1 cut(s)	1343
BstV2I	GAAGAC	1 cut(s)	748
BstX2I	RGATCY	1 cut(s)	1188
BstXI	CCANNNNNNTGG	1 cut(s)	1323
BstYI	RGATCY	1 cut(s)	1188
Bsu15I	ATCGAT	1 cut(s)	672
BsuRI	GGCC	1 cut(s)	1328
BsuTUI	ATCGAT	1 cut(s)	672
BtgZI	GCGATG	1 cut(s)	1358
BtsCI	GGATG	2 cut(s)	406, 1012
BtsI	GCAGTG	1 cut(s)	1328
BtsIMutI	CAGTG	1 cut(s)	1328
Cac8I	GCNNGC	2 cut(s)	438, 487
CfoI	GCGC	1 cut(s)	1391
Cfr13I	GGNCC	1 cut(s)	1326
ClaI	ATCGAT	1 cut(s)	672
Csp6I	GTAC	2 cut(s)	736, 1370
CviAII	CATG	9 cut(s)	396, 486, 490, 694, 821, 1009, 1118, 1262, 1334
CviQI	GTAC	2 cut(s)	736, 1370
DdeI	CTNAG	4 cut(s)	524, 602, 802, 1063
DpnI	GATC	9 cut(s)	62, 314, 563, 668, 888, 895, 954, 1050, 1190
DpnII	GATC	9 cut(s)	60, 312, 561, 666, 886, 893, 952, 1048, 1188
DraIII	CACNNNGTG	1 cut(s)	1121
Eco130I	CCWWGG	1 cut(s)	1316
Eco31I	GGTCTC	2 cut(s)	244, 1061
Eco47III	AGCGCT	1 cut(s)	1390
EcoNI	CCTNNNNNAGG	1 cut(s)	626
EcoT14I	CCWWGG	1 cut(s)	1316
EcoT22I	ATGCAT	2 cut(s)	491, 1014
ErhI	CCWWGG	1 cut(s)	1316
FaeI	CATG	9 cut(s)	399, 489, 493, 697, 824, 1012, 1121, 1265, 1337
FatI	CATG	9 cut(s)	395, 485, 489, 693, 820, 1008, 1117, 1261, 1333
FauI	CCCGC	1 cut(s)	445
FbaI	TGATCA	2 cut(s)	666, 1048
FblI	GTMKAC	2 cut(s)	37, 454
Fnu4HI	GCNGC	1 cut(s)	1341
FokI	GGATG	2 cut(s)	413, 999
Fsp4HI	GCNGC	1 cut(s)	1341
FspBI	CTAG	5 cut(s)	53, 243, 342, 900, 998
GlaI	GCGC	1 cut(s)	1390
GluI	GCNGC	1 cut(s)	1341
GsaI	CCCAGC	1 cut(s)	645
GsuI	CTGGAG	2 cut(s)	879, 1111
HaeII	RGCGCY	1 cut(s)	1392
HaeIII	GGCC	1 cut(s)	1328
HapII	CCGG	4 cut(s)	293, 741, 956, 1256
HhaI	GCGC	1 cut(s)	1391
Hin1II	CATG	9 cut(s)	399, 489, 493, 697, 824, 1012, 1121, 1265, 1337
Hin6I	GCGC	1 cut(s)	1389
HinP1I	GCGC	1 cut(s)	1389
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HinfI	GANTC	8 cut(s)	5, 161, 467, 507, 566, 598, 654, 1180
HpaII	CCGG	4 cut(s)	293, 741, 956, 1256
HphI	GGTGA	2 cut(s)	837, 946
Hpy166II	GTNNAC	7 cut(s)	13, 38, 175, 455, 799, 1026, 1133
Hpy188I	TCNGA	6 cut(s)	166, 603, 659, 768, 943, 1017
Hpy188III	TCNNGA	8 cut(s)	243, 342, 365, 504, 741, 971, 1046, 1186
Hpy8I	GTNNAC	7 cut(s)	13, 38, 175, 455, 799, 1026, 1133
HpyAV	CCTTC	4 cut(s)	88, 510, 1052, 1170
HpyCH4III	ACNGT	2 cut(s)	452, 913
HpyCH4IV	ACGT	2 cut(s)	516, 1076
HpyCH4V	TGCA	6 cut(s)	489, 681, 1012, 1271, 1306, 1384
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1303, 1312
HpyF3I	CTNAG	4 cut(s)	524, 602, 802, 1063
HpySE526I	ACGT	2 cut(s)	516, 1076
Hsp92II	CATG	9 cut(s)	399, 489, 493, 697, 824, 1012, 1121, 1265, 1337
HspAI	GCGC	1 cut(s)	1389
Kpn2I	TCCGGA	1 cut(s)	740
Ksp22I	TGATCA	2 cut(s)	666, 1048
Kzo9I	GATC	9 cut(s)	60, 312, 561, 666, 886, 893, 952, 1048, 1188
LmnI	GCTCC	4 cut(s)	1044, 1130, 1258, 1337
LweI	GCATC	1 cut(s)	1021
MaeI	CTAG	5 cut(s)	53, 243, 342, 900, 998
MaeII	ACGT	2 cut(s)	516, 1076
MaeIII	GTNAC	3 cut(s)	617, 947, 1347
MalI	GATC	9 cut(s)	62, 314, 563, 668, 888, 895, 954, 1050, 1190
MboI	GATC	9 cut(s)	60, 312, 561, 666, 886, 893, 952, 1048, 1188
MboII	GAAGA	5 cut(s)	721, 748, 869, 881, 888
MflI	RGATCY	1 cut(s)	1188
MluCI	AATT	3 cut(s)	276, 431, 648
MlyI	GAGTC	3 cut(s)	607, 663, 1174
MmeI	TCCRAC	1 cut(s)	98
Mph1103I	ATGCAT	2 cut(s)	491, 1014
MroI	TCCGGA	1 cut(s)	740
MroXI	GAANNNNTTC	1 cut(s)	1226
MseI	TTAA	5 cut(s)	156, 255, 633, 707, 882
MslI	CAYNNNNRTG	3 cut(s)	182, 825, 1165
MspI	CCGG	4 cut(s)	293, 741, 956, 1256
Mva1269I	GAATGC	1 cut(s)	102
MvnI	CGCG	1 cut(s)	1343
MwoI	GCNNNNNNNGC	2 cut(s)	1303, 1312
NdeII	GATC	9 cut(s)	60, 312, 561, 666, 886, 893, 952, 1048, 1188
NlaIII	CATG	9 cut(s)	399, 489, 493, 697, 824, 1012, 1121, 1265, 1337
NlaIV	GGNNCC	3 cut(s)	1040, 1126, 1339
NsiI	ATGCAT	2 cut(s)	491, 1014
NspI	RCATGY	2 cut(s)	489, 493
PaeI	GCATGC	1 cut(s)	489
PctI	GAATGC	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	1226
PfeI	GAWTC	5 cut(s)	5, 161, 467, 507, 566
PflFI	GACNNNGTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	1342
PleI	GAGTC	3 cut(s)	606, 662, 1174
PpsI	GAGTC	3 cut(s)	606, 662, 1174
PspFI	CCCAGC	1 cut(s)	641
PspN4I	GGNNCC	3 cut(s)	1040, 1126, 1339
PspPI	GGNCC	1 cut(s)	1326
PsrI	GAACNNNNNNTAC	2 cut(s)	201, 233
PsuI	RGATCY	1 cut(s)	1188
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	2 cut(s)	737, 1371
RsaNI	GTAC	2 cut(s)	736, 1370
RseI	CAYNNNNRTG	3 cut(s)	182, 825, 1165
SaqAI	TTAA	5 cut(s)	156, 255, 633, 707, 882
SatI	GCNGC	1 cut(s)	1341
Sau3AI	GATC	9 cut(s)	60, 312, 561, 666, 886, 893, 952, 1048, 1188
Sau96I	GGNCC	1 cut(s)	1326
ScaI	AGTACT	1 cut(s)	737
SchI	GAGTC	3 cut(s)	607, 663, 1174
SfaNI	GCATC	1 cut(s)	1021
SmiMI	CAYNNNNRTG	3 cut(s)	182, 825, 1165
SmlI	CTYRAG	4 cut(s)	373, 593, 929, 1184
SmoI	CTYRAG	4 cut(s)	373, 593, 929, 1184
SphI	GCATGC	1 cut(s)	489
Sse9I	AATT	3 cut(s)	276, 431, 648
SsiI	CCGC	2 cut(s)	438, 1341
SspI	AATATT	1 cut(s)	127
SspMI	CTAG	5 cut(s)	53, 243, 342, 900, 998
StyI	CCWWGG	1 cut(s)	1316
TaaI	ACNGT	2 cut(s)	452, 913
TaiI	ACGT	2 cut(s)	519, 1079
TaqI	TCGA	9 cut(s)	264, 303, 465, 503, 564, 672, 759, 892, 1366
TasI	AATT	3 cut(s)	276, 431, 648
TatI	WGTACW	2 cut(s)	735, 1369
TauI	GCSGC	1 cut(s)	1343
TfiI	GAWTC	5 cut(s)	5, 161, 467, 507, 566
Tru1I	TTAA	5 cut(s)	156, 255, 633, 707, 882
Tru9I	TTAA	5 cut(s)	156, 255, 633, 707, 882
TscAI	CASTG	1 cut(s)	1328
TspDTI	ATGAA	2 cut(s)	150, 837
TspGWI	ACGGA	1 cut(s)	1290
TspRI	CASTG	1 cut(s)	1328
Tth111I	GACNNNGTC	1 cut(s)	194
XagI	CCTNNNNNAGG	1 cut(s)	626
XapI	RAATTY	1 cut(s)	276
XbaI	TCTAGA	2 cut(s)	242, 341
XceI	RCATGY	2 cut(s)	489, 493
XmiI	GTMKAC	2 cut(s)	37, 454
XmnI	GAANNNNTTC	1 cut(s)	1226
XspI	CTAG	5 cut(s)	53, 243, 342, 900, 998
ZrmI	AGTACT	1 cut(s)	737
Zsp2I	ATGCAT	2 cut(s)	491, 1014

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.