pycom03g15760

f-box protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
16993215 .. 16995015
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g15760.1

Sequence Viewer

Length: 1374 bp
ATGGACCGCCTCTCAAACCTCCCTGATCCCCTCCTTTCACACATACTCTCCTCCTTGCCCTTCAAAGAAGCGGCAAAAACCTCCTCCTTGTCGAAGCAATGGCGCCACCAGTGGAAGTCAACCCGAAACCTTGACTTCAACCACCTTTACTTCGCCAATCTTGATTCTAACGGAGATGTTGAACTCCAACCACAAATCTTCACCAATTTCGTCCAACAATTTATTGCAAACAACAAAAGTCCCATCATGGACAAACTTTCCCTCACATTTTCTTCGCCTGGAGACTCCCAAGAATTGGTGGAAAAATGCATCACATTTTCTGTCGAGCGCAACGTCAAACACCTGAAGCTTGATTTCTCCGACCCCACATGGGATGAAAACGACCTCGATGGCCCGGCACGTCCAATGTTTGATTTGCCTCTGTCTTTTTACAACCATCAAGTTCTTGAAGCCGTGACACTCTTTTCTTGCAAATTCGACGTTTTAAGATTCAAGAATTTTGGGTTGCTGAAAAGTATTTCGCTGCGTTGGATTGAACTCAAAGTTTCTACGCTCAAGGCTTTGCTGGCCAACTGTGGGTGTCTCGAGAGTTTGAGCGTGAAGAGTTGCTGGAACATGGACGGCCTTTATGTTTGTGGGAAGGACTTGAAGTTGTCAACTTTGGTTGTTGAAAAGTGCCATTTTCTGAATCCCTACTTTGAAATCGAGGCTCCAAATCTCAAATATTTGAAGTATTCTGGCACTGTTGGTGTATTTTTTGTGTACGGAACTGGATTGGAGGAGGCAGACCTTGATTTTGGGCTTGAGTCTGAATGTGATGAGTCACTGGGAGATTCTCTTTATCAATCACTCAATCAAATTTGCCCTACTACGGCTTTGACCGTTTGCACCTACATGCTTCAGGTTATTCCCATGGGAGAGGAACCACTTGGTATGGAGCCTAGGTTGAATGTTACACATTTGACCTTAAGGACTGCCATGCATAATTATGAACAATATGGCATCCGGTTTTTCTTGAATAGTTGTCCTCATTTGGAGACTCTTACAATCGACATAGACCGCTCACGCAGAATATGTGATGAATATGAACCTCCATTGGGGGATAAGTTCGAGAGTCTGTGGACGCGCAGTGCAATAATTTTCAAGTGCATAACTCAAACTTTGAGGAAAGTTGAGATCAAGGGCTTCAAGGGAACGCGAAATGAAGTCTATGTGATGTTCTATCTTGTCAACCATGCTCGTGTGCTGGAGAAGCTTACTGTGATCACCTCAAGTGAAGAGAGCAACCGCGGCCCAGAATTTTTTCGCAGTGCAGCTGATCAAGTGCATGGTTTTAGAAAGGCATCGGAGAATCTGTCCATAACAATTGTTTAA

Protein Analysis

458

Amino Acids

52.25

Weight (kDa)

5.65

Isoelectric Point (pI)

43.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 43 6.4e-09 F-box domain
LRR_At5g56370 PF24758 132 - 243 3.8e-08 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1 PF23622 140 - 427 1.1e-19 At1g61320/AtMIF1, LRR domain
FBD PF08387 381 - 420 3.3e-09 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 102
AccB7I CCANNNNNTGG 1 cut(s) 295
AccBSI CCGCTC 1 cut(s) 1062
AccII CGCG 3 cut(s) 1126, 1198, 1290
AciI CCGC 5 cut(s) 7, 71, 1060, 1288, 1290
AclWI GGATC 1 cut(s) 20
AcoI YGGCCR 1 cut(s) 567
AcsI RAATTY 4 cut(s) 473, 496, 858, 1298
AcuI CTGAAG 2 cut(s) 365, 884
AcyI GRCGYC 1 cut(s) 103
AfaI GTAC 1 cut(s) 764
AfiI CCNNNNNNNGG 5 cut(s) 295, 370, 576, 871, 1097
AflII CTTAAG 1 cut(s) 967
AjiI CACGTC 1 cut(s) 401
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 3 cut(s) 349, 1255, 1316
AluI AGCT 3 cut(s) 349, 1255, 1316
Alw26I GTCTC 3 cut(s) 276, 587, 1031
AlwI GGATC 1 cut(s) 20
Ama87I CYCGRG 1 cut(s) 584
AoxI GGCC 4 cut(s) 391, 567, 622, 1291
ApeKI GCWGC 2 cut(s) 523, 1313
ApoI RAATTY 4 cut(s) 473, 496, 858, 1298
ArsI GACNNNNNNTTYG 2 cut(s) 779, 811
Asp700I GAANNNNTTC 1 cut(s) 1302
AspA2I CCTAGG 1 cut(s) 941
AspLEI GCGC 3 cut(s) 105, 330, 1128
AspS9I GGNCC 3 cut(s) 4, 392, 1292
AsuC2I CCSGG 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 193, 1258
AvaI CYCGRG 1 cut(s) 584
AvaII GGWCC 1 cut(s) 4
AvrII CCTAGG 1 cut(s) 941
BalI TGGCCA 1 cut(s) 569
BanI GGYRCC 1 cut(s) 102
BauI CACGAG 1 cut(s) 1239
BbvI GCAGC 2 cut(s) 510, 1325
BccI CCATC 3 cut(s) 251, 383, 444
BceAI ACGGC 3 cut(s) 437, 637, 888
BciT130I CCWGG 1 cut(s) 279
BclI TGATCA 2 cut(s) 1263, 1318
BcnI CCSGG 1 cut(s) 395
BcoDI GTCTC 3 cut(s) 276, 587, 1031
BfaI CTAG 1 cut(s) 942
BfoI RGCGCY 1 cut(s) 106
BfrI CTTAAG 1 cut(s) 967
BisI GCNGC 4 cut(s) 72, 524, 1291, 1314
BlnI CCTAGG 1 cut(s) 941
BlsI GCNGC 4 cut(s) 73, 525, 1292, 1315
Bme1390I CCNGG 2 cut(s) 279, 395
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 584
BmgBI CACGTC 1 cut(s) 401
BmgT120I GGNCC 3 cut(s) 4, 392, 1292
BmiI GGNNCC 4 cut(s) 104, 711, 924, 939
BmrFI CCNGG 2 cut(s) 279, 395
BmrI ACTGGG 1 cut(s) 836
BmsI GCATC 3 cut(s) 318, 1011, 1352
BmuI ACTGGG 1 cut(s) 836
BpmI CTGGAG 2 cut(s) 300, 1268
BpuEI CTTGAG 3 cut(s) 539, 824, 1255
BpuMI CCSGG 1 cut(s) 395
BsaHI GRCGYC 1 cut(s) 103
BsaJI CCNNGG 3 cut(s) 912, 941, 1288
BsaWI WCCGGW 1 cut(s) 1005
BsaXI ACNNNNNCTCC 6 cut(s) 32, 62, 929, 959, 1340, 1370
Bsc4I CCNNNNNNNGG 5 cut(s) 295, 370, 576, 871, 1097
Bse1I ACTGG 3 cut(s) 109, 775, 831
Bse3DI GCAATG 1 cut(s) 104
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 3 cut(s) 912, 941, 1288
BseGI GGATG 2 cut(s) 379, 1002
BseLI CCNNNNNNNGG 5 cut(s) 295, 370, 576, 871, 1097
BseMI GCAATG 1 cut(s) 104
BseNI ACTGG 3 cut(s) 109, 775, 831
BseRI GAGGAG 3 cut(s) 40, 73, 794
BseXI GCAGC 2 cut(s) 510, 1325
BsgI GTGCAG 1 cut(s) 1332
Bsh1236I CGCG 3 cut(s) 1126, 1198, 1290
BshFI GGCC 4 cut(s) 393, 569, 624, 1293
BshNI GGYRCC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 584
BsiSI CCGG 2 cut(s) 395, 1006
BslFI GGGAC 1 cut(s) 225
BslI CCNNNNNNNGG 5 cut(s) 295, 370, 576, 871, 1097
BsmAI GTCTC 3 cut(s) 276, 587, 1031
BsmFI GGGAC 1 cut(s) 225
BsnI GGCC 4 cut(s) 393, 569, 624, 1293
BsoBI CYCGRG 1 cut(s) 584
Bsp143I GATC 4 cut(s) 25, 1176, 1263, 1318
Bsp19I CCATGG 1 cut(s) 912
BspACI CCGC 5 cut(s) 7, 71, 1060, 1288, 1290
BspANI GGCC 4 cut(s) 393, 569, 624, 1293
BspFNI CGCG 3 cut(s) 1126, 1198, 1290
BspLI GGNNCC 4 cut(s) 104, 711, 924, 939
BspPI GGATC 1 cut(s) 20
BspT107I GGYRCC 1 cut(s) 102
BspTI CTTAAG 1 cut(s) 967
BsrBI CCGCTC 1 cut(s) 1062
BsrDI GCAATG 1 cut(s) 104
BsrI ACTGG 3 cut(s) 109, 775, 831
BssECI CCNNGG 3 cut(s) 912, 941, 1288
BssMI GATC 4 cut(s) 25, 1176, 1263, 1318
BssNI GRCGYC 1 cut(s) 103
BssSI CACGAG 1 cut(s) 1239
BssT1I CCWWGG 2 cut(s) 912, 941
Bst2BI CACGAG 1 cut(s) 1239
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 4 cut(s) 575, 745, 883, 1261
Bst6I CTCTTC 2 cut(s) 596, 1272
BstACI GRCGYC 1 cut(s) 103
BstAFI CTTAAG 1 cut(s) 967
BstC8I GCNNGC 1 cut(s) 567
BstDSI CCRYGG 2 cut(s) 912, 1288
BstF5I GGATG 2 cut(s) 379, 1002
BstFNI CGCG 3 cut(s) 1126, 1198, 1290
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 3 cut(s) 105, 330, 1128
BstKTI GATC 4 cut(s) 28, 1179, 1266, 1321
BstMAI GTCTC 3 cut(s) 276, 587, 1031
BstMBI GATC 4 cut(s) 25, 1176, 1263, 1318
BstMWI GCNNNNNNNGC 3 cut(s) 566, 1252, 1290
BstNI CCWGG 1 cut(s) 279
BstNSI RCATGY 1 cut(s) 898
BstSCI CCNGG 2 cut(s) 277, 393
BstUI CGCG 3 cut(s) 1126, 1198, 1290
BstV1I GCAGC 2 cut(s) 510, 1325
BsuRI GGCC 4 cut(s) 393, 569, 624, 1293
BtgI CCRYGG 2 cut(s) 912, 1288
BtrI CACGTC 1 cut(s) 401
BtsCI GGATG 2 cut(s) 379, 1002
BtsI GCAGTG 2 cut(s) 1135, 1315
BtsIMutI CAGTG 5 cut(s) 116, 741, 824, 1135, 1315
Cac8I GCNNGC 1 cut(s) 567
CfoI GCGC 3 cut(s) 105, 330, 1128
Cfr13I GGNCC 3 cut(s) 4, 392, 1292
Cfr42I CCGCGG 1 cut(s) 1291
CseI GACGC 1 cut(s) 1132
Csp6I GTAC 1 cut(s) 763
CviAII CATG 8 cut(s) 247, 369, 616, 895, 913, 979, 1235, 1328
CviQI GTAC 1 cut(s) 763
DinI GGCGCC 1 cut(s) 104
DpnI GATC 4 cut(s) 27, 1178, 1265, 1320
DpnII GATC 4 cut(s) 25, 1176, 1263, 1318
EaeI YGGCCR 1 cut(s) 567
Eam1104I CTCTTC 2 cut(s) 596, 1272
EarI CTCTTC 2 cut(s) 596, 1272
Eco130I CCWWGG 2 cut(s) 912, 941
Eco47I GGWCC 1 cut(s) 4
Eco57I CTGAAG 2 cut(s) 365, 884
Eco88I CYCGRG 1 cut(s) 584
EcoRII CCWGG 1 cut(s) 277
EcoT14I CCWWGG 2 cut(s) 912, 941
EcoT22I ATGCAT 2 cut(s) 311, 984
EgeI GGCGCC 1 cut(s) 104
EheI GGCGCC 1 cut(s) 104
ErhI CCWWGG 2 cut(s) 912, 941
FaeI CATG 8 cut(s) 250, 372, 619, 898, 916, 982, 1238, 1331
FaqI GGGAC 1 cut(s) 225
FatI CATG 8 cut(s) 246, 368, 615, 894, 912, 978, 1234, 1327
FbaI TGATCA 2 cut(s) 1263, 1318
Fnu4HI GCNGC 4 cut(s) 72, 524, 1291, 1314
FokI GGATG 2 cut(s) 386, 989
Fsp4HI GCNGC 4 cut(s) 72, 524, 1291, 1314
FspBI CTAG 1 cut(s) 942
GlaI GCGC 3 cut(s) 104, 329, 1127
GluI GCNGC 4 cut(s) 72, 524, 1291, 1314
GsuI CTGGAG 2 cut(s) 300, 1268
HaeII RGCGCY 1 cut(s) 106
HaeIII GGCC 4 cut(s) 393, 569, 624, 1293
HapII CCGG 2 cut(s) 395, 1006
HgaI GACGC 1 cut(s) 1132
HhaI GCGC 3 cut(s) 105, 330, 1128
Hin1I GRCGYC 1 cut(s) 103
Hin1II CATG 8 cut(s) 250, 372, 619, 898, 916, 982, 1238, 1331
Hin6I GCGC 3 cut(s) 103, 328, 1126
HinP1I GCGC 3 cut(s) 103, 328, 1126
HincII GTYRAC 3 cut(s) 120, 657, 1231
HindII GTYRAC 3 cut(s) 120, 657, 1231
HindIII AAGCTT 2 cut(s) 347, 1253
HpaII CCGG 2 cut(s) 395, 1006
HphI GGTGA 2 cut(s) 193, 1258
Hpy166II GTNNAC 5 cut(s) 120, 657, 763, 1122, 1231
Hpy188I TCNGA 4 cut(s) 361, 687, 811, 1348
Hpy188III TCNNGA 7 cut(s) 161, 446, 493, 584, 586, 1015, 1111
Hpy8I GTNNAC 5 cut(s) 120, 657, 763, 1122, 1231
Hpy99I CGWCG 1 cut(s) 482
HpyAV CCTTC 2 cut(s) 70, 634
HpyCH4III ACNGT 4 cut(s) 575, 745, 883, 1261
HpyCH4IV ACGT 3 cut(s) 333, 400, 480
HpyCH4V TGCA 9 cut(s) 227, 309, 471, 888, 982, 1133, 1149, 1313, 1327
HpyF10VI GCNNNNNNNGC 3 cut(s) 566, 1252, 1290
HpySE526I ACGT 3 cut(s) 333, 400, 480
Hsp92I GRCGYC 1 cut(s) 103
Hsp92II CATG 8 cut(s) 250, 372, 619, 898, 916, 982, 1238, 1331
HspAI GCGC 3 cut(s) 103, 328, 1126
KasI GGCGCC 1 cut(s) 102
Ksp22I TGATCA 2 cut(s) 1263, 1318
KspI CCGCGG 1 cut(s) 1291
Kzo9I GATC 4 cut(s) 25, 1176, 1263, 1318
LmnI GCTCC 2 cut(s) 715, 937
Lsp1109I GCAGC 2 cut(s) 510, 1325
LweI GCATC 3 cut(s) 318, 1011, 1352
MaeI CTAG 1 cut(s) 942
MaeII ACGT 3 cut(s) 333, 400, 480
MaeIII GTNAC 3 cut(s) 454, 822, 952
MalI GATC 4 cut(s) 27, 1178, 1265, 1320
MbiI CCGCTC 1 cut(s) 1062
MboI GATC 4 cut(s) 25, 1176, 1263, 1318
MboII GAAGA 4 cut(s) 190, 264, 613, 1289
MfeI CAATTG 1 cut(s) 1365
MlsI TGGCCA 1 cut(s) 569
MluNI TGGCCA 1 cut(s) 569
Mly113I GGCGCC 1 cut(s) 103
MlyI GAGTC 5 cut(s) 278, 815, 830, 1033, 1123
MmeI TCCRAC 4 cut(s) 211, 238, 384, 509
Mox20I TGGCCA 1 cut(s) 569
Mph1103I ATGCAT 2 cut(s) 311, 984
MroXI GAANNNNTTC 1 cut(s) 1302
MscI TGGCCA 1 cut(s) 569
MseI TTAA 3 cut(s) 485, 968, 1372
MslI CAYNNNNRTG 3 cut(s) 893, 987, 1239
Msp20I TGGCCA 1 cut(s) 569
MspA1I CMGCKG 2 cut(s) 1290, 1316
MspCI CTTAAG 1 cut(s) 967
MspI CCGG 2 cut(s) 395, 1006
MspR9I CCNGG 2 cut(s) 279, 395
MunI CAATTG 1 cut(s) 1365
MvaI CCWGG 1 cut(s) 279
MvnI CGCG 3 cut(s) 1126, 1198, 1290
MwoI GCNNNNNNNGC 3 cut(s) 566, 1252, 1290
NarI GGCGCC 1 cut(s) 103
NciI CCSGG 1 cut(s) 395
NcoI CCATGG 1 cut(s) 912
NdeII GATC 4 cut(s) 25, 1176, 1263, 1318
NlaIII CATG 8 cut(s) 250, 372, 619, 898, 916, 982, 1238, 1331
NlaIV GGNNCC 4 cut(s) 104, 711, 924, 939
NmuCI GTSAC 2 cut(s) 454, 822
NsiI ATGCAT 2 cut(s) 311, 984
NspI RCATGY 1 cut(s) 898
PaeR7I CTCGAG 1 cut(s) 584
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 1302
PfeI GAWTC 5 cut(s) 164, 489, 688, 833, 1351
PflMI CCANNNNNTGG 1 cut(s) 295
PkrI GCNGC 4 cut(s) 73, 525, 1292, 1315
PleI GAGTC 5 cut(s) 278, 814, 829, 1033, 1122
PluTI GGCGCC 1 cut(s) 106
PpsI GAGTC 5 cut(s) 278, 814, 829, 1033, 1122
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 4 cut(s) 104, 711, 924, 939
PspPI GGNCC 3 cut(s) 4, 392, 1292
PvuII CAGCTG 1 cut(s) 1316
RsaI GTAC 1 cut(s) 764
RsaNI GTAC 1 cut(s) 763
RseI CAYNNNNRTG 3 cut(s) 893, 987, 1239
SacII CCGCGG 1 cut(s) 1291
SaqAI TTAA 3 cut(s) 485, 968, 1372
SatI GCNGC 4 cut(s) 72, 524, 1291, 1314
Sau3AI GATC 4 cut(s) 25, 1176, 1263, 1318
Sau96I GGNCC 3 cut(s) 4, 392, 1292
SchI GAGTC 5 cut(s) 278, 815, 830, 1033, 1123
ScrFI CCNGG 2 cut(s) 279, 395
SfaNI GCATC 3 cut(s) 318, 1011, 1352
SfoI GGCGCC 1 cut(s) 104
Sfr274I CTCGAG 1 cut(s) 584
Sfr303I CCGCGG 1 cut(s) 1291
SgrBI CCGCGG 1 cut(s) 1291
SinI GGWCC 1 cut(s) 4
SlaI CTCGAG 1 cut(s) 584
SmiMI CAYNNNNRTG 3 cut(s) 893, 987, 1239
SmlI CTYRAG 5 cut(s) 554, 584, 803, 967, 1270
SmoI CTYRAG 5 cut(s) 554, 584, 803, 967, 1270
SsiI CCGC 5 cut(s) 7, 71, 1060, 1288, 1290
SspDI GGCGCC 1 cut(s) 102
SspI AATATT 1 cut(s) 725
SspMI CTAG 1 cut(s) 942
StyD4I CCNGG 2 cut(s) 277, 393
StyI CCWWGG 2 cut(s) 912, 941
TaaI ACNGT 4 cut(s) 575, 745, 883, 1261
TaiI ACGT 3 cut(s) 336, 403, 483
TaqI TCGA 8 cut(s) 92, 324, 387, 477, 585, 705, 1050, 1110
TauI GCSGC 2 cut(s) 74, 1293
TfiI GAWTC 5 cut(s) 164, 489, 688, 833, 1351
Tru1I TTAA 3 cut(s) 485, 968, 1372
Tru9I TTAA 3 cut(s) 485, 968, 1372
TscAI CASTG 5 cut(s) 116, 748, 831, 1135, 1315
TseFI GTSAC 2 cut(s) 454, 822
TseI GCWGC 2 cut(s) 523, 1313
Tsp45I GTSAC 2 cut(s) 454, 822
TspDTI ATGAA 5 cut(s) 390, 1005, 1095, 1101, 1218
TspGWI ACGGA 2 cut(s) 186, 780
TspRI CASTG 5 cut(s) 116, 748, 831, 1135, 1315
Van91I CCANNNNNTGG 1 cut(s) 295
Vha464I CTTAAG 1 cut(s) 967
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 4 cut(s) 473, 496, 858, 1298
XceI RCATGY 1 cut(s) 898
XhoI CTCGAG 1 cut(s) 584
XmaJI CCTAGG 1 cut(s) 941
XmnI GAANNNNTTC 1 cut(s) 1302
XspI CTAG 1 cut(s) 942
Zsp2I ATGCAT 2 cut(s) 311, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.