Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003556

Physical Location & Seq

Genomic Coordinates Reverse (-)

31341539 .. 31342920

Gene Structure 1382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19162

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGGCTTGATCTCACATTTGCCTGATAATGTTCTTGTAACTATCGTTTCCTTCCTGGCATTCCGAGAGGCGGCCAGAACTTTAGTTCTCGCAAGGAGATGGCAGAACATATGGCGTCAAACGCGAAACATTGAATTTAATGAGCTTTTCTTCTCCTACATTGGTAAAGACGAAGATGATGCCAGGAGAATAGCTTTTGTCAACTTTCTGCAGAACTGGATCAATAACTATCAACCTACGGTTTTGGACAGAGTTTGTGTAACGTTTTCTCGGCCTGGAAACTTCCCTGTGCTTGTGGAAGAGTGTATCAGATTTGCTATTACGAGTGAAGTTAAGGCTCTAGGGCTTGATTTCTCTGATCCATCATGGGGTGATGATGTTTTACTTGGCAATAGTCCTGAACGTTCATTTGTCCTGCCTCAAGTTGTTTATCAACATGGGGTTCTTGAATCTCTAACCCTCCTTTTCTTGCAAGTTCAATGTGGCCGAGATAATTTTTCGTCTCTGGAAGCATCTTTCACTTGTTGTCAATTGCTCGAAAGACTGAGTCTAAAGAACTGCTGGAACACCACTGGCCTTCAAATTGGTGGAAAAAACTTGAGGCTAAGAAGCTTAGTTGTTGACAAGTTCATCATGTCGGAGAATCCTTGGATTGAAATCGAAGCATCAAATCTGAAGTACTTTAAGTATTCAGGGACTATGGCTGTATTCGACATCCGAGCAGGAGAGTTGGAAGAGGTATACCTTGAGTTTGGACTCGAGTCTGAAGGCGATGAAGCAATGGGGGATCGCCACTACCAACTCCTCCACCAACTTCCCGTTAGGATGCTCACAGTTTGCCAGTACATGCTTCAGGCTTTGGTCATCCAGATAGTCCCTCAGAGATCTGTTGAACTTGCTGAAGGTGAACCGGACGACGTAGATGATGTATGGACACCAAATTCACCGGATTACCATTGTGTAAGCCAAACACTGAAAGTGGTTCAGCTGAGAGGGTACAAAGAAACAAGACATGAAGTTAGCTTTCTGAAGTATCTTTTTTTCCATGGCCATGTTCTCGGACAACTTCATATTCTTATCGCCGAGGAGCTTCGGAATCAGAGGAGTGTGGCTGAAAATCGGCGACTTGTGATGAAGACATTTCAAGGTTTGAGAAGAGCCTCGGATAATCTCAGTATAAATCTTTATGGTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009987 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032504 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0051704 GO:0055046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

398

Amino Acids

45.9

Weight (kDa)

5.58

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBD	PF08387	319 - 356	7.8e-08	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G56400 AT1G56400 AT2G17305 AT3G29830 AT3G29830 AT3G62230 AT5G54820
fragaria_vesca	FvH4_7g19741
malus_domestica	MD03G1208600.v1.1 MD11G1222600.v1.1 MD11G1222800.v1.1 MD11G1223200.v1.1
prunus_persica	Prupe.4G208100_v2.0.a1 Prupe.4G208200_v2.0.a1 Prupe.4G208300_v2.0.a1
pyrus_communis	pycom03g15720 pycom03g15760 pycom11g19660
rosa_chinensis	RchiOBHm_Chr1g0363631 RchiOBHm_Chr7g0214121
rosa_laevigata	RLG00000008357 RLG00000027555
rosa_multiflora	Rmu_sc0000548.1_g000010 Rmu_sc0000675.1_g000034
rosa_roxburghii	Rroxscaffold_4G00293030
rosa_rugosa	Rorug01G0308300
rosa_samantha	Rh1AG089100 Rh1AG317200 Rh1BG280600 Rh1CG296700 Rh1DG311800 Rh4AG168100 Rh4BG165000
rosa_wichuraiana	Rw1G006910 Rw1G028130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	741
AccII	CGCG	1 cut(s)	124
AciI	CCGC	1 cut(s)	71
AclI	AACGTT	2 cut(s)	263, 403
AclWI	GGATC	3 cut(s)	227, 353, 795
AcoI	YGGCCR	3 cut(s)	72, 484, 1048
AcsI	RAATTY	2 cut(s)	134, 940
AcuI	CTGAAG	5 cut(s)	695, 786, 836, 921, 1049
AcyI	GRCGYC	1 cut(s)	115
AfaI	GTAC	3 cut(s)	680, 845, 998
AfiI	CCNNNNNNNGG	2 cut(s)	70, 368
AgsI	TTSAA	7 cut(s)	134, 449, 479, 581, 656, 893, 1145
AjnI	CCWGG	3 cut(s)	54, 182, 274
AluBI	AGCT	6 cut(s)	145, 194, 612, 988, 1023, 1090
AluI	AGCT	6 cut(s)	145, 194, 612, 988, 1023, 1090
Alw26I	GTCTC	1 cut(s)	507
AlwI	GGATC	3 cut(s)	227, 353, 795
Ama87I	CYCGRG	1 cut(s)	758
AoxI	GGCC	5 cut(s)	72, 272, 484, 574, 1048
ApoI	RAATTY	2 cut(s)	134, 940
AsuHPI	GGTGA	3 cut(s)	383, 917, 936
AvaI	CYCGRG	1 cut(s)	758
BalI	TGGCCA	1 cut(s)	1050
BbsI	GAAGAC	1 cut(s)	1142
BccI	CCATC	2 cut(s)	93, 370
BcgI	CGANNNNNNTGC	2 cut(s)	161, 195
BciT130I	CCWGG	3 cut(s)	56, 184, 276
BcoDI	GTCTC	1 cut(s)	507
BfaI	CTAG	1 cut(s)	341
BfmI	CTRYAG	1 cut(s)	209
BglII	AGATCT	1 cut(s)	884
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
BmcAI	AGTACT	1 cut(s)	680
Bme1390I	CCNGG	3 cut(s)	56, 184, 276
BmeT110I	CYCGRG	1 cut(s)	758
BmrFI	CCNGG	3 cut(s)	56, 184, 276
BmsI	GCATC	4 cut(s)	169, 521, 674, 816
BoxI	GACNNNNGTC	1 cut(s)	760
BpiI	GAAGAC	1 cut(s)	1142
BpuEI	CTTGAG	3 cut(s)	405, 619, 767
BsaBI	GATNNNNATC	1 cut(s)	656
BsaHI	GRCGYC	1 cut(s)	115
BsaJI	CCNNGG	4 cut(s)	647, 1045, 1083, 1161
BsaWI	WCCGGW	2 cut(s)	910, 946
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 368
Bse1I	ACTGG	3 cut(s)	221, 577, 841
Bse3DI	GCAATG	1 cut(s)	786
Bse8I	GATNNNNATC	1 cut(s)	656
BseBI	CCWGG	3 cut(s)	56, 184, 276
BseDI	CCNNGG	4 cut(s)	647, 1045, 1083, 1161
BseGI	GGATG	3 cut(s)	714, 831, 864
BseJI	GATNNNNATC	1 cut(s)	656
BseLI	CCNNNNNNNGG	2 cut(s)	70, 368
BseMI	GCAATG	1 cut(s)	786
BseMII	CTCAG	4 cut(s)	536, 893, 980, 1186
BseNI	ACTGG	3 cut(s)	221, 577, 841
BseRI	GAGGAG	3 cut(s)	794, 1100, 1117
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	5 cut(s)	74, 274, 486, 576, 1050
BsiHKCI	CYCGRG	1 cut(s)	758
BsiSI	CCGG	2 cut(s)	911, 947
BslFI	GGGAC	2 cut(s)	709, 860
BslI	CCNNNNNNNGG	2 cut(s)	70, 368
BsmAI	GTCTC	1 cut(s)	507
BsmBI	CGTCTC	1 cut(s)	507
BsmFI	GGGAC	2 cut(s)	709, 860
BsmI	GAATGC	1 cut(s)	59
BsnI	GGCC	5 cut(s)	74, 274, 486, 576, 1050
BsoBI	CYCGRG	1 cut(s)	758
Bsp143I	GATC	5 cut(s)	9, 219, 358, 787, 884
Bsp19I	CCATGG	1 cut(s)	1045
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	5 cut(s)	74, 274, 486, 576, 1050
BspCNI	CTCAG	4 cut(s)	537, 892, 981, 1185
BspFNI	CGCG	1 cut(s)	124
BspMAI	CTGCAG	1 cut(s)	213
BspPI	GGATC	3 cut(s)	227, 353, 795
BspQI	GCTCTTC	1 cut(s)	1150
BsrDI	GCAATG	1 cut(s)	786
BsrI	ACTGG	3 cut(s)	221, 577, 841
BssECI	CCNNGG	4 cut(s)	647, 1045, 1083, 1161
BssMI	GATC	5 cut(s)	9, 219, 358, 787, 884
BssNAI	GTATAC	1 cut(s)	742
BssNI	GRCGYC	1 cut(s)	115
BssT1I	CCWWGG	2 cut(s)	647, 1045
Bst1107I	GTATAC	1 cut(s)	742
Bst2UI	CCWGG	3 cut(s)	56, 184, 276
Bst4CI	ACNGT	2 cut(s)	241, 835
Bst6I	CTCTTC	3 cut(s)	294, 729, 1150
BstACI	GRCGYC	1 cut(s)	115
BstDEI	CTNAG	6 cut(s)	545, 605, 613, 879, 989, 1172
BstDSI	CCRYGG	1 cut(s)	1045
BstF5I	GGATG	3 cut(s)	714, 831, 864
BstFNI	CGCG	1 cut(s)	124
BstKTI	GATC	5 cut(s)	12, 222, 361, 790, 887
BstMAI	GTCTC	1 cut(s)	507
BstMBI	GATC	5 cut(s)	9, 219, 358, 787, 884
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNI	CCWGG	3 cut(s)	56, 184, 276
BstNSI	RCATGY	1 cut(s)	850
BstPAI	GACNNNNGTC	1 cut(s)	760
BstSCI	CCNGG	3 cut(s)	54, 182, 274
BstSFI	CTRYAG	1 cut(s)	209
BstUI	CGCG	1 cut(s)	124
BstV2I	GAAGAC	1 cut(s)	1142
BstX2I	RGATCY	1 cut(s)	884
BstYI	RGATCY	1 cut(s)	884
BstZ17I	GTATAC	1 cut(s)	742
BsuRI	GGCC	5 cut(s)	74, 274, 486, 576, 1050
BtgI	CCRYGG	1 cut(s)	1045
BtgZI	GCGATG	1 cut(s)	786
BtsCI	GGATG	3 cut(s)	714, 831, 864
BtsIMutI	CAGTG	2 cut(s)	570, 971
CseI	GACGC	1 cut(s)	104
Csp6I	GTAC	3 cut(s)	679, 844, 997
CviAII	CATG	7 cut(s)	366, 437, 634, 847, 1013, 1046, 1052
CviQI	GTAC	3 cut(s)	679, 844, 997
DdeI	CTNAG	6 cut(s)	545, 605, 613, 879, 989, 1172
DpnI	GATC	5 cut(s)	11, 221, 360, 789, 886
DpnII	GATC	5 cut(s)	9, 219, 358, 787, 884
EaeI	YGGCCR	3 cut(s)	72, 484, 1048
Eam1104I	CTCTTC	3 cut(s)	294, 729, 1150
EarI	CTCTTC	3 cut(s)	294, 729, 1150
Eco130I	CCWWGG	2 cut(s)	647, 1045
Eco57I	CTGAAG	5 cut(s)	695, 786, 836, 921, 1049
Eco88I	CYCGRG	1 cut(s)	758
EcoRII	CCWGG	3 cut(s)	54, 182, 274
EcoT14I	CCWWGG	2 cut(s)	647, 1045
ErhI	CCWWGG	2 cut(s)	647, 1045
Esp3I	CGTCTC	1 cut(s)	507
FaeI	CATG	7 cut(s)	369, 440, 637, 850, 1016, 1049, 1055
FaqI	GGGAC	2 cut(s)	709, 860
FatI	CATG	7 cut(s)	365, 436, 633, 846, 1012, 1045, 1051
FauNDI	CATATG	1 cut(s)	110
FblI	GTMKAC	1 cut(s)	741
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	3 cut(s)	701, 838, 851
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	1 cut(s)	341
GluI	GCNGC	1 cut(s)	72
HaeIII	GGCC	5 cut(s)	74, 274, 486, 576, 1050
HapII	CCGG	2 cut(s)	911, 947
HgaI	GACGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	7 cut(s)	369, 440, 637, 850, 1016, 1049, 1055
HincII	GTYRAC	2 cut(s)	202, 622
HindII	GTYRAC	2 cut(s)	202, 622
HindIII	AAGCTT	1 cut(s)	610
HinfI	GANTC	6 cut(s)	449, 547, 643, 756, 761, 1096
HpaII	CCGG	2 cut(s)	911, 947
HphI	GGTGA	3 cut(s)	383, 917, 936
Hpy166II	GTNNAC	4 cut(s)	202, 622, 742, 908
Hpy188III	TCNNGA	4 cut(s)	398, 446, 506, 868
Hpy8I	GTNNAC	4 cut(s)	202, 622, 742, 908
Hpy99I	CGWCG	1 cut(s)	920
HpyAV	CCTTC	4 cut(s)	61, 587, 761, 896
HpyCH4III	ACNGT	2 cut(s)	241, 835
HpyCH4IV	ACGT	3 cut(s)	263, 403, 918
HpyCH4V	TGCA	2 cut(s)	211, 472
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	6 cut(s)	545, 605, 613, 879, 989, 1172
HpySE526I	ACGT	3 cut(s)	263, 403, 918
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	7 cut(s)	369, 440, 637, 850, 1016, 1049, 1055
Kzo9I	GATC	5 cut(s)	9, 219, 358, 787, 884
LguI	GCTCTTC	1 cut(s)	1150
LmnI	GCTCC	1 cut(s)	1087
LweI	GCATC	4 cut(s)	169, 521, 674, 816
MaeI	CTAG	1 cut(s)	341
MaeII	ACGT	3 cut(s)	263, 403, 918
MaeIII	GTNAC	2 cut(s)	37, 259
MalI	GATC	5 cut(s)	11, 221, 360, 789, 886
MboI	GATC	5 cut(s)	9, 219, 358, 787, 884
MboII	GAAGA	6 cut(s)	142, 185, 311, 746, 1147, 1167
MfeI	CAATTG	1 cut(s)	530
MflI	RGATCY	1 cut(s)	884
MlsI	TGGCCA	1 cut(s)	1050
MluCI	AATT	5 cut(s)	134, 493, 530, 582, 940
MluNI	TGGCCA	1 cut(s)	1050
MlyI	GAGTC	3 cut(s)	556, 750, 770
MmeI	TCCRAC	2 cut(s)	618, 711
Mox20I	TGGCCA	1 cut(s)	1050
MscI	TGGCCA	1 cut(s)	1050
MseI	TTAA	3 cut(s)	138, 333, 684
MslI	CAYNNNNRTG	1 cut(s)	1050
Msp20I	TGGCCA	1 cut(s)	1050
MspA1I	CMGCKG	1 cut(s)	988
MspI	CCGG	2 cut(s)	911, 947
MspR9I	CCNGG	3 cut(s)	56, 184, 276
MunI	CAATTG	1 cut(s)	530
Mva1269I	GAATGC	1 cut(s)	59
MvaI	CCWGG	3 cut(s)	56, 184, 276
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	1 cut(s)	121
NcoI	CCATGG	1 cut(s)	1045
NdeI	CATATG	1 cut(s)	110
NdeII	GATC	5 cut(s)	9, 219, 358, 787, 884
NlaIII	CATG	7 cut(s)	369, 440, 637, 850, 1016, 1049, 1055
NmeAIII	GCCGAG	3 cut(s)	250, 512, 1108
NspI	RCATGY	1 cut(s)	850
PaeR7I	CTCGAG	1 cut(s)	758
PciSI	GCTCTTC	1 cut(s)	1150
PctI	GAATGC	1 cut(s)	59
PfeI	GAWTC	3 cut(s)	449, 643, 1096
PflFI	GACNNNGTC	1 cut(s)	546
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	3 cut(s)	555, 750, 769
PpsI	GAGTC	3 cut(s)	555, 750, 769
PshAI	GACNNNNGTC	1 cut(s)	760
Psp1406I	AACGTT	2 cut(s)	263, 403
Psp6I	CCWGG	3 cut(s)	54, 182, 274
PspGI	CCWGG	3 cut(s)	54, 182, 274
PspXI	VCTCGAGB	1 cut(s)	758
PstI	CTGCAG	1 cut(s)	213
PsuI	RGATCY	1 cut(s)	884
PsyI	GACNNNGTC	1 cut(s)	546
PvuII	CAGCTG	1 cut(s)	988
RsaI	GTAC	3 cut(s)	680, 845, 998
RsaNI	GTAC	3 cut(s)	679, 844, 997
RseI	CAYNNNNRTG	1 cut(s)	1050
SapI	GCTCTTC	1 cut(s)	1150
SaqAI	TTAA	3 cut(s)	138, 333, 684
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	5 cut(s)	9, 219, 358, 787, 884
ScaI	AGTACT	1 cut(s)	680
SchI	GAGTC	3 cut(s)	556, 750, 770
ScrFI	CCNGG	3 cut(s)	56, 184, 276
SfaNI	GCATC	4 cut(s)	169, 521, 674, 816
SfcI	CTRYAG	1 cut(s)	209
Sfr274I	CTCGAG	1 cut(s)	758
SlaI	CTCGAG	1 cut(s)	758
SmiMI	CAYNNNNRTG	1 cut(s)	1050
SmlI	CTYRAG	4 cut(s)	420, 598, 746, 758
SmoI	CTYRAG	4 cut(s)	420, 598, 746, 758
Sse9I	AATT	5 cut(s)	134, 493, 530, 582, 940
SsiI	CCGC	1 cut(s)	71
SspMI	CTAG	1 cut(s)	341
StyD4I	CCNGG	3 cut(s)	54, 182, 274
StyI	CCWWGG	2 cut(s)	647, 1045
TaaI	ACNGT	2 cut(s)	241, 835
TaiI	ACGT	3 cut(s)	266, 406, 921
TaqI	TCGA	4 cut(s)	537, 660, 711, 759
TasI	AATT	5 cut(s)	134, 493, 530, 582, 940
TatI	WGTACW	2 cut(s)	678, 843
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	3 cut(s)	449, 643, 1096
Tru1I	TTAA	3 cut(s)	138, 333, 684
Tru9I	TTAA	3 cut(s)	138, 333, 684
TscAI	CASTG	2 cut(s)	577, 978
TspDTI	ATGAA	6 cut(s)	396, 619, 789, 1029, 1058, 1148
TspRI	CASTG	2 cut(s)	577, 978
Tth111I	GACNNNGTC	1 cut(s)	546
XapI	RAATTY	2 cut(s)	134, 940
XceI	RCATGY	1 cut(s)	850
XhoI	CTCGAG	1 cut(s)	758
XmiI	GTMKAC	1 cut(s)	741
XspI	CTAG	1 cut(s)	341
ZrmI	AGTACT	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.