pycom03g15720

f-box protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
Physical Location & Seq
Reverse (-)
16948305 .. 16950261
1957 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g15720.1

Sequence Viewer

Length: 1407 bp
ATGGACAGATTCTCTCAGTTACCCGAACCTCTCCTTCCGATCATCGTCTCCCACTTGCCCTTCAAAGAAGCCGCAAGAAACTCCATTCTCTCCGAGACATGGCTTCGCCTCTGGCGTTCGACCCAAAACGTCGAGTTCAACGAGCGTTTTTTTGTGAACACTGATGCAGCAGCGGTGGACAGAGCGATTCAGAGGCGAACTTTCATCGATTTTGTGCTGCACTGGATGGAAAACAACCAAGAAAATCAAGTGGGTAAGATTGCGGTCACAATTTCGGAGCCTGAAAATTCAGAAGAATTCGTGCAGCATTGCATCAGATTTTCTCTGGAGCACTATGTCAAACATTTGGCGCTCGATTTTTCTGACCCCAGGTGGGACGACGCCGGGTATGGAACCCAGGCCTATTTTGATTTGCCTTTGGATGTGTATGCTCAGCGAGAACTTGAGTCCCTGGCTCTGTTTTCTTGCAATTTTAATGCGTCTTTGTTTGTGAATTTTGGTTTGCTGAAGCACATTTCATTGGGTTGGATTAAGCTGCCGGTTTTAGTTCAAGAAACTTTGTTAGCACAATGTAGGTTTCTTGAGAGCCTGAGTCTGAAGAAATGTCGGAGCATGAACTACCTCGATATTCGTGGGAAGAACTTCAAGTTAAAGCTAAAAACTTTGGTGGTTGATAGGTGCAGGATTCGTTACCCTCATTTCTTTTACCTTGAAGCACCAAAGTTGAGGTATTTGAAGTTTGTGGGTGGGGCTGTGCCGGAATTGACTGCAGACGAGGGTAGCGAATTCAATTTCTTCGAAGAGTTGGATCTTGACTTGAGCCTTGTGAAAGAATTTCATAGCTCTGCTAGTCCCAATTCTATACTGGCTACGCTTCATCCCGCAAGGGCGTTGACAGTTTGCTCTTACACGCTTCGGGTTATAATCAATCATACAAAAGAGGAACCAATTATTCCGAGTCCTCGTTTGACAGTGGGACTTTTAACATTGAAAACGACAATGCATGACCATGAACAATTCGGCATCAAGTTTTTCTTGAATTGTTGTCCTAGTTTGGAGACTCTTACAATTGAACGGTGCCCTGAGGAAATTCTTGAGTATTACGCAACTCCTTCTGTACTGAAGCCTCAAGAGATGTGGAAGGGAAATGTAGAAGTCTACGAGTGCATAACCCGAGCGCTGAGAATGGTTGAAGTAAAAGGTTATATGGGGTCACAACATGAACTTGACCTGCTCAGCTATCTTCTCACACATGGCCGTTGCATGGAACAGCTTACTGTCATTACATCAAGTGATGAGGAAGTTAATGGTGGAAACCCAGAAGAATTCAGACTCAAAGCTCAAGAGTTCTTGCATCAAGTCGAAGCAGCCTCACAAAATCCAAATCTGGAAATAACAGTTCTGTAA

Protein Analysis

469

Amino Acids

54.01

Weight (kDa)

5.53

Isoelectric Point (pI)

38.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 134 - 245 5.6e-06 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1 PF23622 145 - 433 5.6e-12 At1g61320/AtMIF1, LRR domain
FBD PF08387 386 - 426 4.1e-09 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 923
Acc36I ACCTGC 1 cut(s) 1239
AccB1I GGYRCC 1 cut(s) 1077
AccI GTMKAC 1 cut(s) 1158
AciI CCGC 4 cut(s) 72, 173, 263, 882
AclWI GGATC 1 cut(s) 816
AcoI YGGCCR 1 cut(s) 1255
AcsI RAATTY 7 cut(s) 286, 296, 493, 785, 833, 1089, 1325
AcuI CTGAAG 3 cut(s) 527, 617, 1142
AcyI GRCGYC 1 cut(s) 381
AfaI GTAC 1 cut(s) 1119
AfeI AGCGCT 1 cut(s) 1179
AfiI CCNNNNNNNGG 3 cut(s) 99, 373, 1264
AjnI CCWGG 3 cut(s) 368, 396, 450
AluBI AGCT 6 cut(s) 535, 655, 843, 1239, 1273, 1340
AluI AGCT 6 cut(s) 535, 655, 843, 1239, 1273, 1340
Alw21I GWGCWC 1 cut(s) 333
Alw26I GTCTC 3 cut(s) 52, 89, 1052
AlwI GGATC 1 cut(s) 816
Ama87I CYCGRG 1 cut(s) 1173
Aor51HI AGCGCT 1 cut(s) 1179
AoxI GGCC 2 cut(s) 399, 1255
ApeKI GCWGC 6 cut(s) 167, 170, 217, 304, 535, 1367
ApoI RAATTY 7 cut(s) 286, 296, 493, 785, 833, 1089, 1325
Asp700I GAANNNNTTC 1 cut(s) 641
AspLEI GCGC 2 cut(s) 352, 1180
AsuC2I CCSGG 1 cut(s) 385
AsuII TTCGAA 1 cut(s) 798
AvaI CYCGRG 1 cut(s) 1173
AxyI CCTNAGG 1 cut(s) 1083
BaeGI GKGCMC 1 cut(s) 1082
BanI GGYRCC 1 cut(s) 1077
Bbv12I GWGCWC 1 cut(s) 333
BbvI GCAGC 6 cut(s) 179, 182, 204, 316, 522, 1379
BccI CCATC 1 cut(s) 220
BceAI ACGGC 1 cut(s) 1242
BciT130I CCWGG 3 cut(s) 370, 398, 452
BcnI CCSGG 1 cut(s) 385
BcoDI GTCTC 3 cut(s) 52, 89, 1052
BfaI CTAG 2 cut(s) 849, 1050
BfmI CTRYAG 1 cut(s) 768
BfoI RGCGCY 2 cut(s) 353, 1181
BfuAI ACCTGC 1 cut(s) 1239
BisI GCNGC 7 cut(s) 72, 168, 171, 218, 305, 536, 1368
BlpI GCTNAGC 2 cut(s) 432, 1235
BlsI GCNGC 7 cut(s) 73, 169, 172, 219, 306, 537, 1369
Bme1390I CCNGG 4 cut(s) 370, 385, 398, 452
BmeT110I CYCGRG 1 cut(s) 1173
BmiI GGNNCC 4 cut(s) 279, 394, 945, 1079
BmrFI CCNGG 4 cut(s) 370, 385, 398, 452
BmsI GCATC 4 cut(s) 154, 321, 1032, 1363
BpmI CTGGAG 1 cut(s) 347
Bpu1102I GCTNAGC 2 cut(s) 432, 1235
Bpu14I TTCGAA 1 cut(s) 798
BpuEI CTTGAG 6 cut(s) 464, 602, 838, 1113, 1115, 1326
BpuMI CCSGG 1 cut(s) 385
Bsa29I ATCGAT 1 cut(s) 207
BsaHI GRCGYC 1 cut(s) 381
BsaJI CCNNGG 3 cut(s) 368, 396, 450
Bsc4I CCNNNNNNNGG 3 cut(s) 99, 373, 1264
Bse118I RCCGGY 1 cut(s) 538
Bse1I ACTGG 2 cut(s) 227, 870
Bse21I CCTNAGG 1 cut(s) 1083
Bse3DI GCAATG 1 cut(s) 307
BseBI CCWGG 3 cut(s) 370, 398, 452
BseCI ATCGAT 1 cut(s) 207
BseDI CCNNGG 3 cut(s) 368, 396, 450
BseGI GGATG 3 cut(s) 231, 427, 877
BseLI CCNNNNNNNGG 3 cut(s) 99, 373, 1264
BseMI GCAATG 1 cut(s) 307
BseMII CTCAG 6 cut(s) 29, 446, 581, 1074, 1172, 1249
BseNI ACTGG 2 cut(s) 227, 870
BseSI GKGCMC 1 cut(s) 1082
BseXI GCAGC 6 cut(s) 179, 182, 204, 316, 522, 1379
BsgI GTGCAG 3 cut(s) 203, 323, 700
BshFI GGCC 2 cut(s) 401, 1257
BshNI GGYRCC 1 cut(s) 1077
BshVI ATCGAT 1 cut(s) 207
BsiHKAI GWGCWC 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 1173
BsiSI CCGG 3 cut(s) 384, 539, 758
BslFI GGGAC 4 cut(s) 389, 433, 837, 990
BslI CCNNNNNNNGG 3 cut(s) 99, 373, 1264
BsmAI GTCTC 3 cut(s) 52, 89, 1052
BsmBI CGTCTC 1 cut(s) 52
BsmFI GGGAC 4 cut(s) 389, 433, 837, 990
BsnI GGCC 2 cut(s) 401, 1257
BsoBI CYCGRG 1 cut(s) 1173
Bsp119I TTCGAA 1 cut(s) 798
Bsp1286I GDGCHC 2 cut(s) 333, 1082
Bsp143I GATC 2 cut(s) 39, 808
Bsp1720I GCTNAGC 2 cut(s) 432, 1235
BspACI CCGC 4 cut(s) 72, 173, 263, 882
BspANI GGCC 2 cut(s) 401, 1257
BspCNI CTCAG 6 cut(s) 28, 445, 582, 1075, 1173, 1248
BspDI ATCGAT 1 cut(s) 207
BspLI GGNNCC 4 cut(s) 279, 394, 945, 1079
BspMAI CTGCAG 1 cut(s) 772
BspMI ACCTGC 1 cut(s) 1239
BspPI GGATC 1 cut(s) 816
BspT104I TTCGAA 1 cut(s) 798
BspT107I GGYRCC 1 cut(s) 1077
BsrDI GCAATG 1 cut(s) 307
BsrFI RCCGGY 1 cut(s) 538
BsrI ACTGG 2 cut(s) 227, 870
BssAI RCCGGY 1 cut(s) 538
BssECI CCNNGG 3 cut(s) 368, 396, 450
BssMI GATC 2 cut(s) 39, 808
BssNI GRCGYC 1 cut(s) 381
Bst2UI CCWGG 3 cut(s) 370, 398, 452
Bst4CI ACNGT 5 cut(s) 898, 973, 1077, 1279, 1399
Bst6I CTCTTC 1 cut(s) 795
BstACI GRCGYC 1 cut(s) 381
BstBI TTCGAA 1 cut(s) 798
BstDEI CTNAG 6 cut(s) 15, 432, 590, 1083, 1181, 1235
BstF5I GGATG 3 cut(s) 231, 427, 877
BstH2I RGCGCY 2 cut(s) 353, 1181
BstHHI GCGC 2 cut(s) 352, 1180
BstKTI GATC 2 cut(s) 42, 811
BstMAI GTCTC 3 cut(s) 52, 89, 1052
BstMBI GATC 2 cut(s) 39, 808
BstNI CCWGG 3 cut(s) 370, 398, 452
BstSCI CCNGG 4 cut(s) 368, 383, 396, 450
BstSFI CTRYAG 1 cut(s) 768
BstSLI GKGCMC 1 cut(s) 1082
BstV1I GCAGC 6 cut(s) 179, 182, 204, 316, 522, 1379
BstX2I RGATCY 1 cut(s) 808
BstYI RGATCY 1 cut(s) 808
Bsu15I ATCGAT 1 cut(s) 207
Bsu36I CCTNAGG 1 cut(s) 1083
BsuRI GGCC 2 cut(s) 401, 1257
BsuTUI ATCGAT 1 cut(s) 207
BtsCI GGATG 3 cut(s) 231, 427, 877
BtsIMutI CAGTG 3 cut(s) 159, 220, 978
BveI ACCTGC 1 cut(s) 1239
CfoI GCGC 2 cut(s) 352, 1180
Cfr10I RCCGGY 1 cut(s) 538
ClaI ATCGAT 1 cut(s) 207
CseI GACGC 2 cut(s) 389, 468
Csp6I GTAC 1 cut(s) 1118
CspCI CAANNNNNGTGG 2 cut(s) 1118, 1153
CviAII CATG 7 cut(s) 99, 613, 1004, 1010, 1220, 1253, 1264
CviQI GTAC 1 cut(s) 1118
DdeI CTNAG 6 cut(s) 15, 432, 590, 1083, 1181, 1235
DpnI GATC 2 cut(s) 41, 810
DpnII GATC 2 cut(s) 39, 808
EaeI YGGCCR 1 cut(s) 1255
Eam1104I CTCTTC 1 cut(s) 795
EarI CTCTTC 1 cut(s) 795
Eco147I AGGCCT 1 cut(s) 401
Eco47III AGCGCT 1 cut(s) 1179
Eco57I CTGAAG 3 cut(s) 527, 617, 1142
Eco81I CCTNAGG 1 cut(s) 1083
Eco88I CYCGRG 1 cut(s) 1173
EcoRI GAATTC 3 cut(s) 296, 785, 1325
EcoRII CCWGG 3 cut(s) 368, 396, 450
EcoT22I ATGCAT 1 cut(s) 1005
Esp3I CGTCTC 1 cut(s) 52
FaeI CATG 7 cut(s) 102, 616, 1007, 1013, 1223, 1256, 1267
FalI AAGNNNNNCTT 2 cut(s) 1019, 1051
FaqI GGGAC 4 cut(s) 389, 433, 837, 990
FatI CATG 7 cut(s) 98, 612, 1003, 1009, 1219, 1252, 1263
FauI CCCGC 1 cut(s) 889
FblI GTMKAC 1 cut(s) 1158
Fnu4HI GCNGC 7 cut(s) 72, 168, 171, 218, 305, 536, 1368
FokI GGATG 3 cut(s) 238, 434, 864
Fsp4HI GCNGC 7 cut(s) 72, 168, 171, 218, 305, 536, 1368
FspBI CTAG 2 cut(s) 849, 1050
GlaI GCGC 2 cut(s) 351, 1179
GluI GCNGC 7 cut(s) 72, 168, 171, 218, 305, 536, 1368
GsuI CTGGAG 1 cut(s) 347
HaeII RGCGCY 2 cut(s) 353, 1181
HaeIII GGCC 2 cut(s) 401, 1257
HapII CCGG 3 cut(s) 384, 539, 758
HgaI GACGC 2 cut(s) 389, 468
HhaI GCGC 2 cut(s) 352, 1180
Hin1I GRCGYC 1 cut(s) 381
Hin1II CATG 7 cut(s) 102, 616, 1007, 1013, 1223, 1256, 1267
Hin6I GCGC 2 cut(s) 350, 1178
HinP1I GCGC 2 cut(s) 350, 1178
HincII GTYRAC 1 cut(s) 894
HindII GTYRAC 1 cut(s) 894
HinfI GANTC 8 cut(s) 9, 187, 446, 592, 685, 958, 1060, 1332
HpaII CCGG 3 cut(s) 384, 539, 758
Hpy166II GTNNAC 4 cut(s) 157, 178, 894, 1159
Hpy188III TCNNGA 9 cut(s) 326, 551, 581, 812, 1036, 1094, 1130, 1343, 1388
Hpy8I GTNNAC 4 cut(s) 157, 178, 894, 1159
Hpy99I CGWCG 2 cut(s) 134, 383
HpyAV CCTTC 4 cut(s) 44, 70, 1122, 1135
HpyCH4III ACNGT 5 cut(s) 898, 973, 1077, 1279, 1399
HpyCH4IV ACGT 1 cut(s) 129
HpyF3I CTNAG 6 cut(s) 15, 432, 590, 1083, 1181, 1235
HpySE526I ACGT 1 cut(s) 129
Hsp92I GRCGYC 1 cut(s) 381
Hsp92II CATG 7 cut(s) 102, 616, 1007, 1013, 1223, 1256, 1267
HspAI GCGC 2 cut(s) 350, 1178
Kzo9I GATC 2 cut(s) 39, 808
LmnI GCTCC 3 cut(s) 277, 328, 609
Lsp1109I GCAGC 6 cut(s) 179, 182, 204, 316, 522, 1379
LweI GCATC 4 cut(s) 154, 321, 1032, 1363
MaeI CTAG 2 cut(s) 849, 1050
MaeII ACGT 1 cut(s) 129
MaeIII GTNAC 4 cut(s) 18, 265, 689, 1212
MalI GATC 2 cut(s) 41, 810
MboI GATC 2 cut(s) 39, 808
MboII GAAGA 7 cut(s) 305, 610, 649, 787, 812, 1235, 1334
MfeI CAATTG 1 cut(s) 1068
MflI RGATCY 1 cut(s) 808
MhlI GDGCHC 2 cut(s) 333, 1082
MlyI GAGTC 5 cut(s) 455, 601, 967, 1054, 1326
MmeI TCCRAC 3 cut(s) 506, 587, 786
Mph1103I ATGCAT 1 cut(s) 1005
MroXI GAANNNNTTC 1 cut(s) 641
MseI TTAA 5 cut(s) 474, 531, 650, 983, 1305
MslI CAYNNNNRTG 1 cut(s) 1008
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 3 cut(s) 384, 539, 758
MspR9I CCNGG 4 cut(s) 370, 385, 398, 452
MunI CAATTG 1 cut(s) 1068
MvaI CCWGG 3 cut(s) 370, 398, 452
NciI CCSGG 1 cut(s) 385
NdeII GATC 2 cut(s) 39, 808
NlaIII CATG 7 cut(s) 102, 616, 1007, 1013, 1223, 1256, 1267
NlaIV GGNNCC 4 cut(s) 279, 394, 945, 1079
NmuCI GTSAC 2 cut(s) 265, 1212
NsiI ATGCAT 1 cut(s) 1005
NspV TTCGAA 1 cut(s) 798
PceI AGGCCT 1 cut(s) 401
PcsI WCGNNNNNNNCGW 3 cut(s) 112, 138, 780
PdmI GAANNNNTTC 1 cut(s) 641
PfeI GAWTC 3 cut(s) 9, 187, 685
PkrI GCNGC 7 cut(s) 73, 169, 172, 219, 306, 537, 1369
PleI GAGTC 5 cut(s) 454, 600, 966, 1054, 1326
PpsI GAGTC 5 cut(s) 454, 600, 966, 1054, 1326
PsiI TTATAA 1 cut(s) 923
Psp6I CCWGG 3 cut(s) 368, 396, 450
PspGI CCWGG 3 cut(s) 368, 396, 450
PspN4I GGNNCC 4 cut(s) 279, 394, 945, 1079
PstI CTGCAG 1 cut(s) 772
PsuI RGATCY 1 cut(s) 808
RsaI GTAC 1 cut(s) 1119
RsaNI GTAC 1 cut(s) 1118
RseI CAYNNNNRTG 1 cut(s) 1008
SaqAI TTAA 5 cut(s) 474, 531, 650, 983, 1305
SatI GCNGC 7 cut(s) 72, 168, 171, 218, 305, 536, 1368
Sau3AI GATC 2 cut(s) 39, 808
SchI GAGTC 5 cut(s) 455, 601, 967, 1054, 1326
ScrFI CCNGG 4 cut(s) 370, 385, 398, 452
SduI GDGCHC 2 cut(s) 333, 1082
SfaNI GCATC 4 cut(s) 154, 321, 1032, 1363
SfcI CTRYAG 1 cut(s) 768
SfuI TTCGAA 1 cut(s) 798
SmiMI CAYNNNNRTG 1 cut(s) 1008
SmlI CTYRAG 6 cut(s) 443, 581, 817, 1094, 1128, 1341
SmoI CTYRAG 6 cut(s) 443, 581, 817, 1094, 1128, 1341
SseBI AGGCCT 1 cut(s) 401
SsiI CCGC 4 cut(s) 72, 173, 263, 882
SspMI CTAG 2 cut(s) 849, 1050
StuI AGGCCT 1 cut(s) 401
StyD4I CCNGG 4 cut(s) 368, 383, 396, 450
TaaI ACNGT 5 cut(s) 898, 973, 1077, 1279, 1399
TaiI ACGT 1 cut(s) 132
TaqI TCGA 7 cut(s) 119, 132, 207, 354, 624, 798, 1362
TatI WGTACW 1 cut(s) 1117
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 3 cut(s) 9, 187, 685
Tru1I TTAA 5 cut(s) 474, 531, 650, 983, 1305
Tru9I TTAA 5 cut(s) 474, 531, 650, 983, 1305
TscAI CASTG 3 cut(s) 166, 227, 978
TseFI GTSAC 2 cut(s) 265, 1212
TseI GCWGC 6 cut(s) 167, 170, 217, 304, 535, 1367
Tsp45I GTSAC 2 cut(s) 265, 1212
TspDTI ATGAA 7 cut(s) 193, 507, 629, 827, 866, 1026, 1236
TspRI CASTG 3 cut(s) 166, 227, 978
XapI RAATTY 7 cut(s) 286, 296, 493, 785, 833, 1089, 1325
XcmI CCANNNNNNNNNTGG 1 cut(s) 862
XmiI GTMKAC 1 cut(s) 1158
XmnI GAANNNNTTC 1 cut(s) 641
XspI CTAG 2 cut(s) 849, 1050
Zsp2I ATGCAT 1 cut(s) 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.