AT3G62230

F-box protein At3g62230-like

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
23031531 .. 23033146
1616 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G62230.1

Sequence Viewer

Length: 1386 bp
ATGGACTCAGGAAGTGCAGTGGACATCATTTCGACGCTTTCAGACTTCCTGCTCGTCCTGATCATTTCGAACCTTTCCTTCAAGGAGGCTTTGAGCACCAGTCGCCTTTCCACCCGCTGGAGACACATATGTCGCGAAACGAGAAACATCTCTTTCAGAGAGGACGAGATCGTGACATTCGCTGATGATTCCGTTGCTCGCTATTACCAAAGGGCTGCATTAGTTGCCTATATGGTTGGTTGGGTTAACAATTTTACCGGTGGAGTTGTTGAAAGCTTCGAGCTTCGTCTCTCTAATTCGTATGCTTTTGAAGAAGGGGTCACCACACTGATCGAATTCGCTGTCTCCAAGAATGTCAAGCATCTTTTTCTTGACCTCTCAGAACCTCGTTGGGTTACCAATAACGACGCTGCACAATTAGAACCGGGTTTGATCAAATTACCGGAGAGTTTTTACAAGATTACCAGTCTCGTGACGTTGAAGTTATTCGGTTGCCGGTTTGAACCATCGAGGCTCGCGAAACCGGGTATGGTGAAAACCATGTTCTTCCGCTGGATCCGTCTCGAGATGTTATCGGCTTTGATAGCAAAGACACCTCTTCTCGAGATCTTGAACATCAAAAACTGTTGGGAGATTGGTCTTGATGCGATAACCGGATATAACGACCGGTTAATGAAGTTGGTTTTCAAGTATTGTTCCTTCTCCGCGCAGCAAACCACACTGGACGTGCCCAATATTCAGATCTTCAAGTACTTTGGGAAAGTCTATCGCTTTGAGTTCGCGAGTGCGAACAAGTTAATGGAGGAGGCATATCTGGACTACCGTGAAGAGAGCCGTTACAACGTGAGTGCAGGAGCAATAATCAGTGGATTTCTCTACAGTATGTTGTCTGCTAAGACATTCACAATCTGTCCGTATGTCCTTCAATTGATCCAAGAGTGTGAAGACCCGGTGCGACTGAAAGCACCGATGGAGACAAGACAGTTGGTTCTGAAGACAAATTTTGAACCTAATGAGTTTGTTGGAATCAGATTCATGCTTAACAGTTCTCCGTATCTGGAGACACTCTCATTCCAGATGGTGGGTCCTCGGCCCATCGAAGAGATGGTGCCTCAGATCGATCCAGAGGCTTATTGGGGGCAGAATACCAGTCATGAATGTTTGAAGAAAACACTTAAGAAAGTGGAGGTGTGGAGCTTTTATGGTGGTACGCACGAGTTACGTGTTCTCGAGTATCTGATTCGTTATGGTCGTATGTTGGAGAGGGTGGATCTGTATCAGCCAATTGGATTGGATGATATTCAACTGCTTCCGATACGTGCTGCAGCTGATAGGGTGGGAGAGTTCGAGGCTCGTTCGGAGAATTTGGTCGTTACTTTTTACTAA

Protein Analysis

461

Amino Acids

53.14

Weight (kDa)

5.7

Isoelectric Point (pI)

37.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 129
AccB1I GGYRCC 1 cut(s) 1108
AccB7I CCANNNNNTGG 2 cut(s) 117, 1081
AccII CGCG 4 cut(s) 135, 518, 707, 782
AciI CCGC 3 cut(s) 115, 550, 705
AclWI GGATC 5 cut(s) 550, 563, 925, 1115, 1278
AcsI RAATTY 3 cut(s) 335, 1000, 1363
AcuI CTGAAG 1 cut(s) 1013
AfaI GTAC 2 cut(s) 752, 1210
AfiI CCNNNNNNNGG 2 cut(s) 117, 1081
AflII CTTAAG 1 cut(s) 1175
AflIII ACRYGT 1 cut(s) 1222
AgeI ACCGGT 2 cut(s) 257, 666
AjiI CACGTC 1 cut(s) 727
AluBI AGCT 4 cut(s) 276, 283, 1197, 1328
AluI AGCT 4 cut(s) 276, 283, 1197, 1328
Alw21I GWGCWC 1 cut(s) 98
Alw26I GTCTC 7 cut(s) 115, 293, 349, 473, 566, 968, 1055
AlwI GGATC 5 cut(s) 550, 563, 925, 1115, 1278
Ama87I CYCGRG 3 cut(s) 563, 602, 1229
AoxI GGCC 1 cut(s) 1091
ApeKI GCWGC 5 cut(s) 215, 410, 709, 1322, 1325
ApoI RAATTY 3 cut(s) 335, 1000, 1363
ArsI GACNNNNNNTTYG 2 cut(s) 327, 359
AsiGI ACCGGT 2 cut(s) 257, 666
Asp700I GAANNNNTTC 1 cut(s) 485
AspLEI GCGC 1 cut(s) 709
AspS9I GGNCC 2 cut(s) 1085, 1092
AsuC2I CCSGG 3 cut(s) 426, 525, 950
AsuHPI GGTGA 2 cut(s) 313, 544
AsuII TTCGAA 1 cut(s) 68
AvaI CYCGRG 3 cut(s) 563, 602, 1229
AvaII GGWCC 1 cut(s) 1085
BaeGI GKGCMC 1 cut(s) 732
BamHI GGATCC 1 cut(s) 555
BanI GGYRCC 1 cut(s) 1108
BarI GAAGNNNNNNTAC 2 cut(s) 683, 715
BauI CACGAG 2 cut(s) 470, 1214
BbsI GAAGAC 2 cut(s) 951, 1001
Bbv12I GWGCWC 1 cut(s) 98
BbvI GCAGC 5 cut(s) 202, 397, 721, 1309, 1337
BccI CCATC 5 cut(s) 514, 964, 1072, 1099, 1103
BceAI ACGGC 1 cut(s) 819
BclI TGATCA 2 cut(s) 60, 432
BcnI CCSGG 3 cut(s) 426, 525, 950
BcoDI GTCTC 7 cut(s) 115, 293, 349, 473, 566, 968, 1055
BfmI CTRYAG 2 cut(s) 877, 1323
BfrI CTTAAG 1 cut(s) 1175
BglII AGATCT 2 cut(s) 606, 741
BisI GCNGC 5 cut(s) 216, 411, 710, 1323, 1326
BlsI GCNGC 5 cut(s) 217, 412, 711, 1324, 1327
BmcAI AGTACT 1 cut(s) 752
Bme1390I CCNGG 3 cut(s) 426, 525, 950
Bme18I GGWCC 1 cut(s) 1085
BmeT110I CYCGRG 3 cut(s) 563, 602, 1229
BmgBI CACGTC 1 cut(s) 727
BmgT120I GGNCC 2 cut(s) 1085, 1092
BmiI GGNNCC 3 cut(s) 557, 1086, 1110
BmrFI CCNGG 3 cut(s) 426, 525, 950
BmsI GCATC 2 cut(s) 370, 634
BpiI GAAGAC 2 cut(s) 951, 1001
BplI GAGNNNNNCTC 2 cut(s) 1052, 1084
BpmI CTGGAG 2 cut(s) 139, 1079
Bpu14I TTCGAA 1 cut(s) 68
BpuMI CCSGG 3 cut(s) 426, 525, 950
Bsa29I ATCGAT 1 cut(s) 1119
BsaAI YACGTR 2 cut(s) 1223, 1319
BsaBI GATNNNNATC 1 cut(s) 1275
BsaJI CCNNGG 1 cut(s) 1088
BsaWI WCCGGW 4 cut(s) 257, 442, 653, 666
Bsc4I CCNNNNNNNGG 2 cut(s) 117, 1081
Bse118I RCCGGY 3 cut(s) 257, 495, 666
Bse1I ACTGG 4 cut(s) 99, 465, 726, 1149
Bse8I GATNNNNATC 1 cut(s) 1275
BseCI ATCGAT 1 cut(s) 1119
BseDI CCNNGG 1 cut(s) 1088
BseGI GGATG 1 cut(s) 1300
BseJI GATNNNNATC 1 cut(s) 1275
BseLI CCNNNNNNNGG 2 cut(s) 117, 1081
BseMII CTCAG 3 cut(s) 21, 393, 1127
BseNI ACTGG 4 cut(s) 99, 465, 726, 1149
BseRI GAGGAG 1 cut(s) 818
BseSI GKGCMC 1 cut(s) 732
BseXI GCAGC 5 cut(s) 202, 397, 721, 1309, 1337
BsgI GTGCAG 3 cut(s) 36, 396, 870
Bsh1236I CGCG 4 cut(s) 135, 518, 707, 782
Bsh1285I CGRYCG 1 cut(s) 667
BshFI GGCC 1 cut(s) 1093
BshNI GGYRCC 1 cut(s) 1108
BshTI ACCGGT 2 cut(s) 257, 666
BshVI ATCGAT 1 cut(s) 1119
BsiEI CGRYCG 1 cut(s) 667
BsiHKAI GWGCWC 1 cut(s) 98
BsiHKCI CYCGRG 3 cut(s) 563, 602, 1229
BsiSI CCGG 8 cut(s) 258, 425, 443, 496, 524, 654, 667, 950
BslI CCNNNNNNNGG 2 cut(s) 117, 1081
BsmAI GTCTC 7 cut(s) 115, 293, 349, 473, 566, 968, 1055
BsmBI CGTCTC 2 cut(s) 293, 566
BsnI GGCC 1 cut(s) 1093
BsoBI CYCGRG 3 cut(s) 563, 602, 1229
Bsp119I TTCGAA 1 cut(s) 68
Bsp1286I GDGCHC 2 cut(s) 98, 732
Bsp68I TCGCGA 3 cut(s) 135, 518, 782
BspACI CCGC 3 cut(s) 115, 550, 705
BspANI GGCC 1 cut(s) 1093
BspCNI CTCAG 3 cut(s) 20, 392, 1126
BspDI ATCGAT 1 cut(s) 1119
BspFNI CGCG 4 cut(s) 135, 518, 707, 782
BspHI TCATGA 1 cut(s) 1153
BspLI GGNNCC 3 cut(s) 557, 1086, 1110
BspMAI CTGCAG 1 cut(s) 1327
BspPI GGATC 5 cut(s) 550, 563, 925, 1115, 1278
BspT104I TTCGAA 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 1108
BspTI CTTAAG 1 cut(s) 1175
BsrFI RCCGGY 3 cut(s) 257, 495, 666
BsrI ACTGG 4 cut(s) 99, 465, 726, 1149
BssAI RCCGGY 3 cut(s) 257, 495, 666
BssECI CCNNGG 1 cut(s) 1088
BssSI CACGAG 2 cut(s) 470, 1214
Bst2BI CACGAG 2 cut(s) 470, 1214
Bst4CI ACNGT 5 cut(s) 626, 824, 881, 984, 1046
Bst6I CTCTTC 3 cut(s) 603, 822, 1095
BstAFI CTTAAG 1 cut(s) 1175
BstAPI GCANNNNNTGC 1 cut(s) 224
BstBAI YACGTR 2 cut(s) 1223, 1319
BstBI TTCGAA 1 cut(s) 68
BstC8I GCNNGC 2 cut(s) 199, 516
BstDEI CTNAG 4 cut(s) 7, 379, 894, 1113
BstEII GGTNACC 2 cut(s) 319, 394
BstF5I GGATG 1 cut(s) 1300
BstFNI CGCG 4 cut(s) 135, 518, 707, 782
BstHHI GCGC 1 cut(s) 709
BstMAI GTCTC 7 cut(s) 115, 293, 349, 473, 566, 968, 1055
BstMCI CGRYCG 1 cut(s) 667
BstMWI GCNNNNNNNGC 3 cut(s) 102, 224, 584
BstPI GGTNACC 2 cut(s) 319, 394
BstSCI CCNGG 3 cut(s) 424, 523, 948
BstSFI CTRYAG 2 cut(s) 877, 1323
BstSLI GKGCMC 1 cut(s) 732
BstUI CGCG 4 cut(s) 135, 518, 707, 782
BstV1I GCAGC 5 cut(s) 202, 397, 721, 1309, 1337
BstV2I GAAGAC 2 cut(s) 951, 1001
BstX2I RGATCY 4 cut(s) 555, 606, 741, 1270
BstYI RGATCY 4 cut(s) 555, 606, 741, 1270
Bsu15I ATCGAT 1 cut(s) 1119
BsuRI GGCC 1 cut(s) 1093
BsuTUI ATCGAT 1 cut(s) 1119
BtrI CACGTC 1 cut(s) 727
BtsCI GGATG 1 cut(s) 1300
BtsI GCAGTG 1 cut(s) 24
BtsIMutI CAGTG 4 cut(s) 24, 326, 719, 871
BtuMI TCGCGA 3 cut(s) 135, 518, 782
Cac8I GCNNGC 2 cut(s) 199, 516
CciI TCATGA 1 cut(s) 1153
CfoI GCGC 1 cut(s) 709
Cfr10I RCCGGY 3 cut(s) 257, 495, 666
Cfr13I GGNCC 2 cut(s) 1085, 1092
ClaI ATCGAT 1 cut(s) 1119
CseI GACGC 2 cut(s) 43, 416
Csp6I GTAC 2 cut(s) 751, 1209
CspAI ACCGGT 2 cut(s) 257, 666
CviAII CATG 3 cut(s) 541, 1036, 1154
CviQI GTAC 2 cut(s) 751, 1209
DdeI CTNAG 4 cut(s) 7, 379, 894, 1113
DrdI GACNNNNNNGTC 1 cut(s) 129
DseDI GACNNNNNNGTC 1 cut(s) 129
Eam1104I CTCTTC 3 cut(s) 603, 822, 1095
EarI CTCTTC 3 cut(s) 603, 822, 1095
Eco47I GGWCC 1 cut(s) 1085
Eco57I CTGAAG 1 cut(s) 1013
Eco88I CYCGRG 3 cut(s) 563, 602, 1229
Eco91I GGTNACC 2 cut(s) 319, 394
EcoO109I RGGNCCY 1 cut(s) 1085
EcoO65I GGTNACC 2 cut(s) 319, 394
EcoRI GAATTC 1 cut(s) 335
Esp3I CGTCTC 2 cut(s) 293, 566
FaeI CATG 3 cut(s) 544, 1039, 1157
FatI CATG 3 cut(s) 540, 1035, 1153
FauI CCCGC 1 cut(s) 122
FauNDI CATATG 1 cut(s) 128
FbaI TGATCA 2 cut(s) 60, 432
Fnu4HI GCNGC 5 cut(s) 216, 411, 710, 1323, 1326
FokI GGATG 1 cut(s) 1307
Fsp4HI GCNGC 5 cut(s) 216, 411, 710, 1323, 1326
GlaI GCGC 1 cut(s) 708
GluI GCNGC 5 cut(s) 216, 411, 710, 1323, 1326
GsuI CTGGAG 2 cut(s) 139, 1079
HaeIII GGCC 1 cut(s) 1093
HapII CCGG 8 cut(s) 258, 425, 443, 496, 524, 654, 667, 950
HgaI GACGC 2 cut(s) 43, 416
HhaI GCGC 1 cut(s) 709
Hin1II CATG 3 cut(s) 544, 1039, 1157
Hin6I GCGC 1 cut(s) 707
HinP1I GCGC 1 cut(s) 707
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HindIII AAGCTT 1 cut(s) 274
HinfI GANTC 5 cut(s) 5, 188, 1026, 1032, 1240
HpaI GTTAAC 1 cut(s) 247
HpaII CCGG 8 cut(s) 258, 425, 443, 496, 524, 654, 667, 950
HphI GGTGA 2 cut(s) 313, 544
Hpy166II GTNNAC 2 cut(s) 22, 247
Hpy8I GTNNAC 2 cut(s) 22, 247
Hpy99I CGWCG 2 cut(s) 37, 410
HpyAV CCTTC 4 cut(s) 88, 308, 709, 932
HpyCH4III ACNGT 5 cut(s) 626, 824, 881, 984, 1046
HpyCH4IV ACGT 5 cut(s) 476, 726, 843, 1222, 1318
HpyCH4V TGCA 5 cut(s) 17, 218, 413, 851, 1325
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 224, 584
HpyF3I CTNAG 4 cut(s) 7, 379, 894, 1113
HpySE526I ACGT 5 cut(s) 476, 726, 843, 1222, 1318
Hsp92II CATG 3 cut(s) 544, 1039, 1157
HspAI GCGC 1 cut(s) 707
Ksp22I TGATCA 2 cut(s) 60, 432
KspAI GTTAAC 1 cut(s) 247
LmnI GCTCC 2 cut(s) 854, 1194
Lsp1109I GCAGC 5 cut(s) 202, 397, 721, 1309, 1337
LweI GCATC 2 cut(s) 370, 634
MaeII ACGT 5 cut(s) 476, 726, 843, 1222, 1318
MaeIII GTNAC 7 cut(s) 172, 319, 394, 472, 836, 1218, 1372
MboII GAAGA 9 cut(s) 323, 538, 590, 736, 839, 956, 1006, 1112, 1177
MfeI CAATTG 2 cut(s) 926, 1284
MflI RGATCY 4 cut(s) 555, 606, 741, 1270
MhlI GDGCHC 2 cut(s) 98, 732
MluCI AATT 9 cut(s) 250, 295, 335, 416, 437, 926, 1000, 1284, 1363
MmeI TCCRAC 2 cut(s) 1003, 1239
MroXI GAANNNNTTC 1 cut(s) 485
MseI TTAA 5 cut(s) 246, 671, 797, 1041, 1176
MspA1I CMGCKG 3 cut(s) 117, 552, 1328
MspCI CTTAAG 1 cut(s) 1175
MspI CCGG 8 cut(s) 258, 425, 443, 496, 524, 654, 667, 950
MspR9I CCNGG 3 cut(s) 426, 525, 950
MunI CAATTG 2 cut(s) 926, 1284
MvnI CGCG 4 cut(s) 135, 518, 707, 782
MwoI GCNNNNNNNGC 3 cut(s) 102, 224, 584
NciI CCSGG 3 cut(s) 426, 525, 950
NdeI CATATG 1 cut(s) 128
NlaIII CATG 3 cut(s) 544, 1039, 1157
NlaIV GGNNCC 3 cut(s) 557, 1086, 1110
NmeAIII GCCGAG 1 cut(s) 1069
NmuCI GTSAC 3 cut(s) 172, 319, 472
NruI TCGCGA 3 cut(s) 135, 518, 782
NspV TTCGAA 1 cut(s) 68
PaeR7I CTCGAG 3 cut(s) 563, 602, 1229
PagI TCATGA 1 cut(s) 1153
PcsI WCGNNNNNNNCGW 2 cut(s) 515, 1249
PdmI GAANNNNTTC 1 cut(s) 485
PfeI GAWTC 4 cut(s) 188, 1026, 1032, 1240
PflMI CCANNNNNTGG 2 cut(s) 117, 1081
PinAI ACCGGT 2 cut(s) 257, 666
PkrI GCNGC 5 cut(s) 217, 412, 711, 1324, 1327
Ppu21I YACGTR 2 cut(s) 1223, 1319
PpuMI RGGWCCY 1 cut(s) 1085
Psp5II RGGWCCY 1 cut(s) 1085
PspEI GGTNACC 2 cut(s) 319, 394
PspN4I GGNNCC 3 cut(s) 557, 1086, 1110
PspPI GGNCC 2 cut(s) 1085, 1092
PspPPI RGGWCCY 1 cut(s) 1085
PstI CTGCAG 1 cut(s) 1327
PsuI RGATCY 4 cut(s) 555, 606, 741, 1270
PvuII CAGCTG 1 cut(s) 1328
RruI TCGCGA 3 cut(s) 135, 518, 782
RsaI GTAC 2 cut(s) 752, 1210
RsaNI GTAC 2 cut(s) 751, 1209
SaqAI TTAA 5 cut(s) 246, 671, 797, 1041, 1176
SatI GCNGC 5 cut(s) 216, 411, 710, 1323, 1326
Sau96I GGNCC 2 cut(s) 1085, 1092
ScaI AGTACT 1 cut(s) 752
ScrFI CCNGG 3 cut(s) 426, 525, 950
SduI GDGCHC 2 cut(s) 98, 732
SfaNI GCATC 2 cut(s) 370, 634
SfcI CTRYAG 2 cut(s) 877, 1323
Sfr274I CTCGAG 3 cut(s) 563, 602, 1229
SfuI TTCGAA 1 cut(s) 68
SinI GGWCC 1 cut(s) 1085
SlaI CTCGAG 3 cut(s) 563, 602, 1229
SmlI CTYRAG 4 cut(s) 563, 602, 1175, 1229
SmoI CTYRAG 4 cut(s) 563, 602, 1175, 1229
Sse9I AATT 9 cut(s) 250, 295, 335, 416, 437, 926, 1000, 1284, 1363
SsiI CCGC 3 cut(s) 115, 550, 705
SspI AATATT 1 cut(s) 736
StyD4I CCNGG 3 cut(s) 424, 523, 948
TaaI ACNGT 5 cut(s) 626, 824, 881, 984, 1046
TaiI ACGT 5 cut(s) 479, 729, 846, 1225, 1321
TasI AATT 9 cut(s) 250, 295, 335, 416, 437, 926, 1000, 1284, 1363
TatI WGTACW 1 cut(s) 750
TfiI GAWTC 4 cut(s) 188, 1026, 1032, 1240
Tru1I TTAA 5 cut(s) 246, 671, 797, 1041, 1176
Tru9I TTAA 5 cut(s) 246, 671, 797, 1041, 1176
TscAI CASTG 4 cut(s) 24, 333, 726, 871
TseFI GTSAC 3 cut(s) 172, 319, 472
TseI GCWGC 5 cut(s) 215, 410, 709, 1322, 1325
Tsp45I GTSAC 3 cut(s) 172, 319, 472
TspDTI ATGAA 3 cut(s) 689, 1024, 1170
TspGWI ACGGA 4 cut(s) 181, 548, 903, 1041
TspRI CASTG 4 cut(s) 24, 333, 726, 871
Van91I CCANNNNNTGG 2 cut(s) 117, 1081
Vha464I CTTAAG 1 cut(s) 1175
VpaK11BI GGWCC 1 cut(s) 1085
XapI RAATTY 3 cut(s) 335, 1000, 1363
XcmI CCANNNNNNNNNTGG 2 cut(s) 1102, 1131
XhoI CTCGAG 3 cut(s) 563, 602, 1229
XmnI GAANNNNTTC 1 cut(s) 485
ZrmI AGTACT 1 cut(s) 752
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.