Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004002

Physical Location & Seq

Genomic Coordinates Reverse (-)

21312257 .. 21312919

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G57550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGGGTAGCTTCCTTGAGGTTCTTTGTGCAATCTTCATACCTCCTGTTGGTGTGTTCCTCAGATATGGCCTTGGGTTGGAGTTTTGGGTCTGTTTGCTTCTAACGTTATTCGCTTTTATCCCCGGACTGATATATGCCATCTACGTTCTCACCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0006970 GO:0006972 GO:0008150 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0016021 GO:0031224 GO:0033993 GO:0042221 GO:0042538 GO:0043207 GO:0044425 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0097305 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pmp3

Protein Analysis

52

Amino Acids

5.84

Weight (kDa)

5.89

Isoelectric Point (pI)

21.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pmp3	PF01679	4 - 50	5.5e-19	Proteolipid membrane potential modulator

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G57550 AT3G05880 AT3G05890
fragaria_vesca	FvH4_6g15380
malus_domestica	MD04G1104200.v1.1 MD04G1185600.v1.1 MD04G1185700.v1.1 MD04G1185900.v1.1 MD12G1124100.v1.1 MD12G1199100.v1.1 MD12G1199200.v1.1 MD12G1199300.v1.1
prunus_persica	Prupe.6G241100_v2.0.a1 Prupe.6G303600_v2.0.a1 Prupe.6G303700_v2.0.a1
pyrus_communis	pycom12g18540 pycom12g18550 pycom12g18570
rosa_chinensis	RchiOBHm_Chr3g0458631 RchiOBHm_Chr3g0458641 RchiOBHm_Chr3g0468861
rosa_multiflora	Rmu_sc0001639.1_g000017
rosa_roxburghii	Rroxscaffold_6G00412510 Rroxscaffold_6G00420890
rosa_rugosa	Rorug03G0030500 Rorug03G0030600.1 Rorug03G0030700.1 Rorug03G0030800
rosa_samantha	Rh3DG092600 Rh7DG019500
rosa_wichuraiana	Rw3G007570 Rw3G007580 Rw3G013800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	47, 76
AluBI	AGCT	1 cut(s)	9
AluI	AGCT	1 cut(s)	9
AoxI	GGCC	1 cut(s)	67
AsuC2I	CCSGG	1 cut(s)	123
AsuHPI	GGTGA	1 cut(s)	142
BccI	CCATC	1 cut(s)	146
BcnI	CCSGG	1 cut(s)	123
Bme1390I	CCNGG	1 cut(s)	123
BmrFI	CCNGG	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	35
BpuMI	CCSGG	1 cut(s)	123
BsaJI	CCNNGG	2 cut(s)	70, 121
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 76
BseDI	CCNNGG	2 cut(s)	70, 121
BseLI	CCNNNNNNNGG	2 cut(s)	47, 76
BseMII	CTCAG	1 cut(s)	73
BshFI	GGCC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	123
BslI	CCNNNNNNNGG	2 cut(s)	47, 76
BsnI	GGCC	1 cut(s)	69
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	1 cut(s)	72
BssECI	CCNNGG	2 cut(s)	70, 121
BssT1I	CCWWGG	1 cut(s)	70
BstDEI	CTNAG	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	121
BsuRI	GGCC	1 cut(s)	69
CviJI	RGCY	2 cut(s)	9, 69
CviKI_1	RGCY	2 cut(s)	9, 69
DdeI	CTNAG	1 cut(s)	59
Eco130I	CCWWGG	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	70
FaiI	YATR	4 cut(s)	38, 66, 133, 135
HaeIII	GGCC	1 cut(s)	69
HapII	CCGG	1 cut(s)	123
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	62
HpyCH4IV	ACGT	2 cut(s)	104, 144
HpyCH4V	TGCA	1 cut(s)	29
HpyF3I	CTNAG	1 cut(s)	59
HpySE526I	ACGT	2 cut(s)	104, 144
LpnPI	CCDG	2 cut(s)	57, 136
MaeII	ACGT	2 cut(s)	104, 144
MboII	GAAGA	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	3 cut(s)	10, 51, 68
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	123
NciI	CCSGG	1 cut(s)	123
Psp1406I	AACGTT	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	123
SetI	ASST	5 cut(s)	11, 21, 43, 107, 147
SgeI	CNNG	5 cut(s)	26, 56, 83, 134, 135
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	70
TaiI	ACGT	2 cut(s)	107, 147
TspDTI	ATGAA	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.