Rh3DG092600

Hydrophobic protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0004002
Physical Location & Seq
Reverse (-)
7166019 .. 7168046
2028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG092600.1

Sequence Viewer

Length: 225 bp
ATGCCGAGTGAAGGAACAGCAAACTTCATCGATATCCTCATCGCCATCCTCTTGCCTCCTCTTGGGGTCTTCCTCAAGTTTGGCTGCAAACATGCGGTGGCAACCCATGAGCCGTTGGGTTTTCTGACAGTCTGGTTGCTTCCATCCCAATGCTGCTCCTACTCATTTGGTGCTCCTGGGGCACGTTATTCCATGAAGACCCCAATCAATCTCATTAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pmp3

Protein Analysis

74

Amino Acids

8.04

Weight (kDa)

8.96

Isoelectric Point (pI)

36.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pmp3 PF01679 9 - 33 1.7e-06 Proteolipid membrane potential modulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 95
AfiI CCNNNNNNNGG 2 cut(s) 11, 62
AjnI CCWGG 1 cut(s) 175
Alw21I GWGCWC 1 cut(s) 175
ApeKI GCWGC 2 cut(s) 84, 153
BaeGI GKGCMC 1 cut(s) 184
BbsI GAAGAC 2 cut(s) 61, 203
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 2 cut(s) 71, 140
BccI CCATC 2 cut(s) 53, 151
BceAI ACGGC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 177
BisI GCNGC 2 cut(s) 85, 154
BlsI GCNGC 2 cut(s) 86, 155
Bme1390I CCNGG 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 177
BpiI GAAGAC 2 cut(s) 61, 203
BpuEI CTTGAG 1 cut(s) 59
Bsa29I ATCGAT 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 176
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 62
BseBI CCWGG 1 cut(s) 177
BseCI ATCGAT 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 176
BseGI GGATG 2 cut(s) 45, 143
BseLI CCNNNNNNNGG 2 cut(s) 11, 62
BseRI GAGGAG 1 cut(s) 48
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 2 cut(s) 71, 140
BshVI ATCGAT 1 cut(s) 30
BsiHKAI GWGCWC 1 cut(s) 175
BslI CCNNNNNNNGG 2 cut(s) 11, 62
Bsp1286I GDGCHC 2 cut(s) 175, 184
BspACI CCGC 1 cut(s) 95
BspDI ATCGAT 1 cut(s) 30
BssECI CCNNGG 1 cut(s) 176
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 130
BstF5I GGATG 2 cut(s) 45, 143
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 95
BstSCI CCNGG 1 cut(s) 175
BstSLI GKGCMC 1 cut(s) 184
BstV1I GCAGC 2 cut(s) 71, 140
BstV2I GAAGAC 2 cut(s) 61, 203
Bsu15I ATCGAT 1 cut(s) 30
BsuTUI ATCGAT 1 cut(s) 30
BtgZI GCGATG 1 cut(s) 25
BtsCI GGATG 2 cut(s) 45, 143
ClaI ATCGAT 1 cut(s) 30
CviAII CATG 3 cut(s) 92, 107, 193
CviJI RGCY 2 cut(s) 84, 112
CviKI_1 RGCY 2 cut(s) 84, 112
Eco32I GATATC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 175
EcoRV GATATC 1 cut(s) 34
FaeI CATG 3 cut(s) 95, 110, 196
FaiI YATR 3 cut(s) 93, 108, 194
FatI CATG 3 cut(s) 91, 106, 192
Fnu4HI GCNGC 2 cut(s) 85, 154
FokI GGATG 2 cut(s) 32, 130
Fsp4HI GCNGC 2 cut(s) 85, 154
GluI GCNGC 2 cut(s) 85, 154
Hin1II CATG 3 cut(s) 95, 110, 196
Hpy188I TCNGA 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 5
HpyCH4III ACNGT 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 1 cut(s) 87
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 3 cut(s) 95, 110, 196
LmnI GCTCC 2 cut(s) 161, 178
LpnPI CCDG 3 cut(s) 118, 162, 189
Lsp1109I GCAGC 2 cut(s) 71, 140
MaeII ACGT 1 cut(s) 184
MboII GAAGA 2 cut(s) 61, 208
MhlI GDGCHC 2 cut(s) 175, 184
MnlI CCTC 5 cut(s) 47, 59, 66, 69, 83
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 179
NlaIII CATG 3 cut(s) 95, 110, 196
NmeAIII GCCGAG 1 cut(s) 30
NspI RCATGY 1 cut(s) 95
PkrI GCNGC 2 cut(s) 86, 155
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
RseI CAYNNNNRTG 1 cut(s) 148
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 2 cut(s) 85, 154
ScrFI CCNGG 1 cut(s) 177
SduI GDGCHC 2 cut(s) 175, 184
SetI ASST 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 148
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SsiI CCGC 1 cut(s) 95
StyD4I CCNGG 1 cut(s) 175
TaaI ACNGT 1 cut(s) 130
TaiI ACGT 1 cut(s) 187
TaqI TCGA 1 cut(s) 30
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TseI GCWGC 2 cut(s) 84, 153
TspDTI ATGAA 2 cut(s) 16, 209
XceI RCATGY 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.