Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004002

Physical Location & Seq

Genomic Coordinates Reverse (-)

1757440 .. 1758807

Gene Structure 1368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G05890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGAGTACAGCCACTTTCGTAGAGATTATTCTTGCTATCATCTTGCCTCCTCTCGGCGTCTTTCTCAAATTTGGTTGCAAGGTTGAGTTTTGGATATGTTTGATTTTGACGCTGTTTGGTTATCTTCCCGGAATCCTTTACGCTCTTTATATCATCACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0016021 GO:0031224 GO:0033993 GO:0042221 GO:0042538 GO:0044425 GO:0050896 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pmp3

Protein Analysis

54

Amino Acids

6.08

Weight (kDa)

7.77

Isoelectric Point (pI)

50.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pmp3	PF01679	6 - 52	7.7e-22	Proteolipid membrane potential modulator

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004002)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G57550 AT3G05880 AT3G05890
fragaria_vesca	FvH4_6g15380
malus_domestica	MD04G1104200.v1.1 MD04G1185600.v1.1 MD04G1185700.v1.1 MD04G1185900.v1.1 MD12G1124100.v1.1 MD12G1199100.v1.1 MD12G1199200.v1.1 MD12G1199300.v1.1
prunus_persica	Prupe.6G241100_v2.0.a1 Prupe.6G303600_v2.0.a1 Prupe.6G303700_v2.0.a1
pyrus_communis	pycom12g18540 pycom12g18550 pycom12g18570
rosa_chinensis	RchiOBHm_Chr3g0458631 RchiOBHm_Chr3g0458641 RchiOBHm_Chr3g0468861
rosa_multiflora	Rmu_sc0001639.1_g000017
rosa_roxburghii	Rroxscaffold_6G00412510 Rroxscaffold_6G00420890
rosa_rugosa	Rorug03G0030500 Rorug03G0030600.1 Rorug03G0030700.1 Rorug03G0030800
rosa_samantha	Rh3DG092600 Rh7DG019500
rosa_wichuraiana	Rw3G007570 Rw3G007580 Rw3G013800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	68
AcyI	GRCGYC	1 cut(s)	57
AdeI	CACNNNGTG	1 cut(s)	162
AfaI	GTAC	1 cut(s)	7
AfiI	CCNNNNNNNGG	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	68
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	129
Bme1390I	CCNGG	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	129
BpuMI	CCSGG	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseRI	GAGGAG	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	53
BssNI	GRCGYC	1 cut(s)	57
BstACI	GRCGYC	1 cut(s)	57
BstSCI	CCNGG	1 cut(s)	127
CseI	GACGC	2 cut(s)	46, 118
Csp6I	GTAC	1 cut(s)	6
CviJI	RGCY	1 cut(s)	11
CviKI_1	RGCY	1 cut(s)	11
CviQI	GTAC	1 cut(s)	6
DraIII	CACNNNGTG	1 cut(s)	162
FaiI	YATR	2 cut(s)	97, 150
HapII	CCGG	1 cut(s)	129
HgaI	GACGC	2 cut(s)	46, 118
Hin1I	GRCGYC	1 cut(s)	57
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	1 cut(s)	148
HpyCH4V	TGCA	1 cut(s)	78
Hsp92I	GRCGYC	1 cut(s)	57
LpnPI	CCDG	1 cut(s)	142
MboII	GAAGA	1 cut(s)	116
MluCI	AATT	1 cut(s)	68
MnlI	CCTC	2 cut(s)	57, 60
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	1 cut(s)	129
NciI	CCSGG	1 cut(s)	129
NmeAIII	GCCGAG	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	132
PfoI	TCCNGGA	1 cut(s)	127
RsaI	GTAC	1 cut(s)	7
RsaNI	GTAC	1 cut(s)	6
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	1 cut(s)	84
SgeI	CNNG	6 cut(s)	44, 55, 65, 91, 140, 141
Sse9I	AATT	1 cut(s)	68
StyD4I	CCNGG	1 cut(s)	127
TasI	AATT	1 cut(s)	68
TatI	WGTACW	1 cut(s)	5
TfiI	GAWTC	1 cut(s)	132
XapI	RAATTY	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.