MD04G1185700.v1.1

Proteolipid membrane potential modulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0004002
Physical Location & Seq
Forward (+)
27669693 .. 27671731
2039 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1185700.v1.1.491

Sequence Viewer

Length: 360 bp
ATGGGTACAGCAACCTGCATCGACATCATCATCGCCATCCTCTTGCCACCTCTTGGTGTCTTCCTCAGGTTTGGCTGTCATAATTTTCTCGGAATTTTGGATCTGTTTGGTGCTGACTCTGTTCGGTTACCTCCCTGGTATTATATATGCCATCTATGCCATCACCAAGTGATCCTTTCAATTTGTGTAAAGGATGTGTGTGGAGGGCGTCTACGTCTTTTTGTTTATGTATCAAGGGTTTGTTTTCAACCGTTTGATGGATTGGTCTTATCTGGTGTAGCCAAATGGATGGTTGATCTCATTCATGTAGCGTGTATTTGGTGCAATTGTTCCTTGTTTTTTACTCTCATTTTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pmp3

Protein Analysis

120

Amino Acids

13.37

Weight (kDa)

7.54

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pmp3 PF01679 6 - 27 3.3e-06 Proteolipid membrane potential modulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 23
AccB7I CCANNNNNTGG 1 cut(s) 53
AccI GTMKAC 1 cut(s) 211
AclWI GGATC 2 cut(s) 108, 166
AcsI RAATTY 1 cut(s) 93
AcyI GRCGYC 1 cut(s) 208
AdeI CACNNNGTG 1 cut(s) 169
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 2 cut(s) 53, 257
AgsI TTSAA 2 cut(s) 180, 248
AjnI CCWGG 1 cut(s) 134
AlwI GGATC 2 cut(s) 108, 166
ApoI RAATTY 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 155
AxyI CCTNAGG 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 52
BccI CCATC 5 cut(s) 44, 159, 168, 251, 283
BciT130I CCWGG 1 cut(s) 136
BfuAI ACCTGC 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 136
BmrFI CCNGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 27
BpiI GAAGAC 1 cut(s) 52
BsaHI GRCGYC 1 cut(s) 208
BsaJI CCNNGG 1 cut(s) 134
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 257
Bse21I CCTNAGG 1 cut(s) 65
BseBI CCWGG 1 cut(s) 136
BseDI CCNNGG 1 cut(s) 134
BseGI GGATG 3 cut(s) 36, 199, 294
BseLI CCNNNNNNNGG 2 cut(s) 53, 257
BseMII CTCAG 1 cut(s) 79
BslI CCNNNNNNNGG 2 cut(s) 53, 257
Bsp143I GATC 3 cut(s) 100, 171, 295
BspCNI CTCAG 1 cut(s) 78
BspMI ACCTGC 1 cut(s) 23
BspPI GGATC 2 cut(s) 108, 166
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 3 cut(s) 100, 171, 295
BssNI GRCGYC 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 252
BstACI GRCGYC 1 cut(s) 208
BstDEI CTNAG 1 cut(s) 65
BstEII GGTNACC 1 cut(s) 126
BstF5I GGATG 3 cut(s) 36, 199, 294
BstKTI GATC 3 cut(s) 103, 174, 298
BstMBI GATC 3 cut(s) 100, 171, 295
BstMWI GCNNNNNNNGC 1 cut(s) 156
BstNI CCWGG 1 cut(s) 136
BstPI GGTNACC 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 134
BstV2I GAAGAC 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 100
BstXI CCANNNNNNTGG 1 cut(s) 289
BstYI RGATCY 1 cut(s) 100
Bsu36I CCTNAGG 1 cut(s) 65
BtgZI GCGATG 1 cut(s) 16
BtsCI GGATG 3 cut(s) 36, 199, 294
BveI ACCTGC 1 cut(s) 23
CseI GACGC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 6
CviAII CATG 1 cut(s) 305
CviJI RGCY 2 cut(s) 75, 281
CviKI_1 RGCY 2 cut(s) 75, 281
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 1 cut(s) 65
DpnI GATC 3 cut(s) 102, 173, 297
DpnII GATC 3 cut(s) 100, 171, 295
DraIII CACNNNGTG 1 cut(s) 169
Eco81I CCTNAGG 1 cut(s) 65
Eco91I GGTNACC 1 cut(s) 126
EcoO65I GGTNACC 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 134
FaeI CATG 1 cut(s) 308
FaiI YATR 7 cut(s) 81, 144, 146, 148, 157, 228, 306
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 1 cut(s) 304
FblI GTMKAC 1 cut(s) 211
FokI GGATG 3 cut(s) 23, 206, 301
HgaI GACGC 1 cut(s) 197
Hin1I GRCGYC 1 cut(s) 208
Hin1II CATG 1 cut(s) 308
HinfI GANTC 1 cut(s) 116
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 212
Hpy188I TCNGA 1 cut(s) 92
Hpy8I GTNNAC 1 cut(s) 212
HpyCH4III ACNGT 1 cut(s) 252
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 2 cut(s) 18, 324
HpyF10VI GCNNNNNNNGC 1 cut(s) 156
HpyF3I CTNAG 1 cut(s) 65
HpySE526I ACGT 1 cut(s) 214
Hsp92I GRCGYC 1 cut(s) 208
Hsp92II CATG 1 cut(s) 308
Kzo9I GATC 3 cut(s) 100, 171, 295
LpnPI CCDG 5 cut(s) 28, 52, 121, 148, 258
LweI GCATC 1 cut(s) 27
MaeII ACGT 1 cut(s) 214
MaeIII GTNAC 1 cut(s) 126
MalI GATC 3 cut(s) 102, 173, 297
MboI GATC 3 cut(s) 100, 171, 295
MboII GAAGA 1 cut(s) 52
MfeI CAATTG 1 cut(s) 325
MflI RGATCY 1 cut(s) 100
MluCI AATT 4 cut(s) 82, 93, 180, 325
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 5 cut(s) 50, 60, 74, 141, 197
MspR9I CCNGG 1 cut(s) 136
MunI CAATTG 1 cut(s) 325
MvaI CCWGG 1 cut(s) 136
MwoI GCNNNNNNNGC 1 cut(s) 156
NdeII GATC 3 cut(s) 100, 171, 295
NlaIII CATG 1 cut(s) 308
PflMI CCANNNNNTGG 1 cut(s) 53
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 134
PspEI GGTNACC 1 cut(s) 126
PspGI CCWGG 1 cut(s) 134
PsuI RGATCY 1 cut(s) 100
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
Sau3AI GATC 3 cut(s) 100, 171, 295
SchI GAGTC 1 cut(s) 110
ScrFI CCNGG 1 cut(s) 136
SetI ASST 5 cut(s) 17, 52, 71, 133, 217
SfaNI GCATC 1 cut(s) 27
Sse9I AATT 4 cut(s) 82, 93, 180, 325
StyD4I CCNGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 252
TaiI ACGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 21
TasI AATT 4 cut(s) 82, 93, 180, 325
TspDTI ATGAA 1 cut(s) 293
Van91I CCANNNNNTGG 1 cut(s) 53
XapI RAATTY 1 cut(s) 93
XmiI GTMKAC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.