MD04G1185600.v1.1

Proteolipid membrane potential modulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0004002
Physical Location & Seq
Forward (+)
27664681 .. 27666401
1721 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1185600.v1.1.491

Sequence Viewer

Length: 138 bp
ATGGGTGCAGCAACCTGCATTGACATCATCCTCGCCATACTCTTACCACCTCTTGGTGTCTTCCTTAGGTTTGGCTGTCATTCGGAGTTTTGGATCTGTTTGCTGCTGACTGTGCTTGGTTACATCCCTGGTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pmp3

Protein Analysis

46

Amino Acids

4.85

Weight (kDa)

5.3

Isoelectric Point (pI)

42.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pmp3 PF01679 6 - 44 9e-18 Proteolipid membrane potential modulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 23
AccB7I CCANNNNNTGG 1 cut(s) 53
AclWI GGATC 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 53
AjnI CCWGG 1 cut(s) 127
AlwI GGATC 1 cut(s) 101
ApeKI GCWGC 2 cut(s) 8, 103
AxyI CCTNAGG 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 52
BbvI GCAGC 2 cut(s) 20, 90
BciT130I CCWGG 1 cut(s) 129
BfuAI ACCTGC 1 cut(s) 23
BisI GCNGC 2 cut(s) 9, 104
BlsI GCNGC 2 cut(s) 10, 105
Bme1390I CCNGG 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 52
BsaJI CCNNGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse21I CCTNAGG 1 cut(s) 65
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 2 cut(s) 27, 123
BseLI CCNNNNNNNGG 1 cut(s) 53
BseXI GCAGC 2 cut(s) 20, 90
BsgI GTGCAG 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 53
Bsp143I GATC 1 cut(s) 93
BspMI ACCTGC 1 cut(s) 23
BspPI GGATC 1 cut(s) 101
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 65
BstF5I GGATG 2 cut(s) 27, 123
BstKTI GATC 1 cut(s) 96
BstMBI GATC 1 cut(s) 93
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 127
BstV1I GCAGC 2 cut(s) 20, 90
BstV2I GAAGAC 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
Bsu36I CCTNAGG 1 cut(s) 65
BtsCI GGATG 2 cut(s) 27, 123
BveI ACCTGC 1 cut(s) 23
CviJI RGCY 1 cut(s) 75
CviKI_1 RGCY 1 cut(s) 75
DdeI CTNAG 1 cut(s) 65
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
Eco81I CCTNAGG 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 127
FaiI YATR 1 cut(s) 38
Fnu4HI GCNGC 2 cut(s) 9, 104
FokI GGATG 2 cut(s) 14, 110
Fsp4HI GCNGC 2 cut(s) 9, 104
GluI GCNGC 2 cut(s) 9, 104
Hpy188I TCNGA 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 8, 18
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpyF3I CTNAG 1 cut(s) 65
Kzo9I GATC 1 cut(s) 93
LpnPI CCDG 2 cut(s) 28, 114
Lsp1109I GCAGC 2 cut(s) 20, 90
MaeIII GTNAC 1 cut(s) 119
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MboII GAAGA 1 cut(s) 52
MflI RGATCY 1 cut(s) 93
MnlI CCTC 2 cut(s) 41, 60
MseI TTAA 1 cut(s) 136
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 112
NdeII GATC 1 cut(s) 93
PflMI CCANNNNNTGG 1 cut(s) 53
PkrI GCNGC 2 cut(s) 10, 105
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PsuI RGATCY 1 cut(s) 93
SaqAI TTAA 1 cut(s) 136
SatI GCNGC 2 cut(s) 9, 104
Sau3AI GATC 1 cut(s) 93
ScrFI CCNGG 1 cut(s) 129
SetI ASST 3 cut(s) 17, 52, 71
SgeI CNNG 4 cut(s) 27, 44, 65, 128
StyD4I CCNGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 112
Tru1I TTAA 1 cut(s) 136
Tru9I TTAA 1 cut(s) 136
TseI GCWGC 2 cut(s) 8, 103
Van91I CCANNNNNTGG 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.