RchiOBHm_Chr3g0458631

hydrophobic protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0004002
Physical Location & Seq
Reverse (-)
7255745 .. 7257769
2025 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42527

Sequence Viewer

Length: 165 bp
ATGAGTACAGCAACCTTCATCGACATCATCATCGCCATCCTCTTGCCTCCTCTTGGGGTCTTCCTGAGGTTTGGCTGCGGGGTGGAGTTCTGGATCTGTCTGATACTGACTCTTTTTGGTTACCTTCCTGGGATCATCTATGCTATCTGGGCCATCACCAAGTGA

Protein Analysis

54

Amino Acids

6.02

Weight (kDa)

5.82

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pmp3 PF01679 6 - 52 2.7e-21 Proteolipid membrane potential modulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 78
AclWI GGATC 2 cut(s) 101, 140
AdeI CACNNNGTG 1 cut(s) 162
AfaI GTAC 1 cut(s) 7
AfiI CCNNNNNNNGG 1 cut(s) 53
AjnI CCWGG 1 cut(s) 127
AlwI GGATC 2 cut(s) 101, 140
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 75
AspS9I GGNCC 1 cut(s) 150
AsuHPI GGTGA 1 cut(s) 148
AxyI CCTNAGG 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 44, 161
BciT130I CCWGG 1 cut(s) 129
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 150
BmrFI CCNGG 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 52
BsaJI CCNNGG 1 cut(s) 128
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse21I CCTNAGG 1 cut(s) 65
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 128
BseGI GGATG 1 cut(s) 36
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 56
BseRI GAGGAG 1 cut(s) 39
BseXI GCAGC 1 cut(s) 62
BshFI GGCC 1 cut(s) 152
BslI CCNNNNNNNGG 1 cut(s) 53
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 2 cut(s) 93, 132
BspACI CCGC 1 cut(s) 78
BspANI GGCC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 57
BspPI GGATC 2 cut(s) 101, 140
BssECI CCNNGG 1 cut(s) 128
BssMI GATC 2 cut(s) 93, 132
Bst2UI CCWGG 1 cut(s) 129
BstDEI CTNAG 1 cut(s) 65
BstEII GGTNACC 1 cut(s) 119
BstF5I GGATG 1 cut(s) 36
BstKTI GATC 2 cut(s) 96, 135
BstMBI GATC 2 cut(s) 93, 132
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNI CCWGG 1 cut(s) 129
BstPI GGTNACC 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
Bsu36I CCTNAGG 1 cut(s) 65
BsuRI GGCC 1 cut(s) 152
BtgZI GCGATG 1 cut(s) 16
BtsCI GGATG 1 cut(s) 36
Cfr13I GGNCC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 6
CviJI RGCY 2 cut(s) 75, 152
CviKI_1 RGCY 2 cut(s) 75, 152
CviQI GTAC 1 cut(s) 6
DdeI CTNAG 1 cut(s) 65
DpnI GATC 2 cut(s) 95, 134
DpnII GATC 2 cut(s) 93, 132
DraIII CACNNNGTG 1 cut(s) 162
Eco81I CCTNAGG 1 cut(s) 65
Eco91I GGTNACC 1 cut(s) 119
EcoO65I GGTNACC 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 127
FaiI YATR 1 cut(s) 141
FauI CCCGC 1 cut(s) 71
Fnu4HI GCNGC 1 cut(s) 76
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 1 cut(s) 76
GluI GCNGC 1 cut(s) 76
HaeIII GGCC 1 cut(s) 152
HinfI GANTC 1 cut(s) 109
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 102
Hpy188III TCNNGA 2 cut(s) 64, 91
HpyAV CCTTC 2 cut(s) 25, 134
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 1 cut(s) 65
Kzo9I GATC 2 cut(s) 93, 132
LpnPI CCDG 5 cut(s) 76, 77, 114, 133, 141
Lsp1109I GCAGC 1 cut(s) 62
MaeIII GTNAC 1 cut(s) 119
MalI GATC 2 cut(s) 95, 134
MboI GATC 2 cut(s) 93, 132
MboII GAAGA 1 cut(s) 52
MflI RGATCY 1 cut(s) 93
MlyI GAGTC 1 cut(s) 103
MnlI CCTC 4 cut(s) 50, 57, 60, 60
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 149
NdeII GATC 2 cut(s) 93, 132
PkrI GCNGC 1 cut(s) 77
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 127
PspEI GGTNACC 1 cut(s) 119
PspGI CCWGG 1 cut(s) 127
PspPI GGNCC 1 cut(s) 150
PsuI RGATCY 1 cut(s) 93
RsaI GTAC 1 cut(s) 7
RsaNI GTAC 1 cut(s) 6
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 2 cut(s) 93, 132
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 129
SetI ASST 3 cut(s) 17, 71, 126
SgeI CNNG 8 cut(s) 55, 65, 76, 91, 103, 140, 141, 160
SsiI CCGC 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 127
TaqI TCGA 1 cut(s) 21
TatI WGTACW 1 cut(s) 5
TseI GCWGC 1 cut(s) 75
TspDTI ATGAA 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.