RchiOBHm_Chr3g0468861

Proteolipid membrane potential modulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0004002
Physical Location & Seq
Reverse (-)
14746360 .. 14746727
368 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43472

Sequence Viewer

Length: 213 bp
ATGCCATTTCTGCTGGAACCGAGTTCTACTGCTGAGCTTGTAATCATGGGCGCATGCGCGACGTGCTGTGAAATCCTCCTCGCCATATTGCTTCCACCACTCGGCGTCGTCATCCGCTATGGCTGTGGGGTGGAGTTTTGGATCTGTTTGTTGCTGACGCTGTGCGGTTATATACCAGGAATTATATATGCAGTTTGTATCTTGCTTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pmp3

Protein Analysis

70

Amino Acids

7.53

Weight (kDa)

4.09

Isoelectric Point (pI)

54.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pmp3 PF01679 22 - 68 5.8e-20 Proteolipid membrane potential modulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 59
AciI CCGC 2 cut(s) 115, 165
AclWI GGATC 1 cut(s) 149
AcuI CTGAAG 1 cut(s) 191
AcyI GRCGYC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 101
AjiI CACGTC 1 cut(s) 63
AjnI CCWGG 1 cut(s) 175
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
AlwI GGATC 1 cut(s) 149
AspLEI GCGC 2 cut(s) 53, 59
BciT130I CCWGG 1 cut(s) 177
BlpI GCTNAGC 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 177
BmgBI CACGTC 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 177
Bpu1102I GCTNAGC 1 cut(s) 33
BsaHI GRCGYC 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 101
BseBI CCWGG 1 cut(s) 177
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 1 cut(s) 101
BseMII CTCAG 1 cut(s) 24
BseRI GAGGAG 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 101
Bsp143I GATC 1 cut(s) 141
Bsp1720I GCTNAGC 1 cut(s) 33
BspACI CCGC 2 cut(s) 115, 165
BspCNI CTCAG 1 cut(s) 25
BspFNI CGCG 1 cut(s) 59
BspLI GGNNCC 1 cut(s) 18
BspPI GGATC 1 cut(s) 149
BssMI GATC 1 cut(s) 141
BssNI GRCGYC 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 177
BstACI GRCGYC 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 111
BstFNI CGCG 1 cut(s) 59
BstHHI GCGC 2 cut(s) 53, 59
BstKTI GATC 1 cut(s) 144
BstMBI GATC 1 cut(s) 141
BstMWI GCNNNNNNNGC 2 cut(s) 10, 63
BstNI CCWGG 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 175
BstUI CGCG 1 cut(s) 59
BstX2I RGATCY 1 cut(s) 141
BstYI RGATCY 1 cut(s) 141
BtrI CACGTC 1 cut(s) 63
BtsCI GGATG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 55
CfoI GCGC 2 cut(s) 53, 59
CseI GACGC 2 cut(s) 94, 166
CviAII CATG 2 cut(s) 46, 54
CviJI RGCY 2 cut(s) 37, 123
CviKI_1 RGCY 2 cut(s) 37, 123
DdeI CTNAG 1 cut(s) 33
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
Eco57I CTGAAG 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 175
FaeI CATG 2 cut(s) 49, 57
FaiI YATR 9 cut(s) 47, 55, 86, 120, 171, 173, 185, 187, 189
FatI CATG 2 cut(s) 45, 53
FokI GGATG 1 cut(s) 98
GlaI GCGC 2 cut(s) 52, 58
HgaI GACGC 2 cut(s) 94, 166
HhaI GCGC 2 cut(s) 53, 59
Hin1I GRCGYC 1 cut(s) 105
Hin1II CATG 2 cut(s) 49, 57
Hin6I GCGC 2 cut(s) 51, 57
HinP1I GCGC 2 cut(s) 51, 57
Hpy99I CGWCG 2 cut(s) 64, 110
HpyCH4IV ACGT 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 63
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 62
Hsp92I GRCGYC 1 cut(s) 105
Hsp92II CATG 2 cut(s) 49, 57
HspAI GCGC 2 cut(s) 51, 57
Kzo9I GATC 1 cut(s) 141
LpnPI CCDG 2 cut(s) 162, 189
MaeII ACGT 1 cut(s) 62
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MflI RGATCY 1 cut(s) 141
MluCI AATT 1 cut(s) 180
MnlI CCTC 2 cut(s) 86, 89
MspR9I CCNGG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 177
MvnI CGCG 1 cut(s) 59
MwoI GCNNNNNNNGC 2 cut(s) 10, 63
NdeII GATC 1 cut(s) 141
NlaIII CATG 2 cut(s) 49, 57
NlaIV GGNNCC 1 cut(s) 18
NmeAIII GCCGAG 1 cut(s) 81
NspI RCATGY 1 cut(s) 57
PaeI GCATGC 1 cut(s) 57
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 18
PsuI RGATCY 1 cut(s) 141
Sau3AI GATC 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 177
SetI ASST 2 cut(s) 39, 65
SphI GCATGC 1 cut(s) 57
Sse9I AATT 1 cut(s) 180
SsiI CCGC 2 cut(s) 115, 165
StyD4I CCNGG 1 cut(s) 175
TaiI ACGT 1 cut(s) 65
TasI AATT 1 cut(s) 180
XceI RCATGY 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.